Abstract
Polyploidization has been viewed as a highly dynamic process and a major force in the evolution of higher plants, including many important crops. To better understand the genomic evolution of Brassica polyploids, we used the Brassica triangle, including three allopolyploids and three diploids, to study genomic evolution after the formation of polyploids. Based on the inter-simple sequence repeat (ISSR) analysis, the different degree of A, B or C genomic modifications were observed in the three Brassica allopolyploids. In B-contained allopolyploids, B genome always altered less than the other genome (A or C), showing that B genome was relatively conserved in the evolution of Brassica allopolyploids. ISSR data supported that a higher degree of ancestral genomic divergence gave rise to a greater frequency of genomic change of polyploids. The possible mechanisms for the genomic changes and the reason for the relatively conserved B genome were discussed.
Article PDF
Similar content being viewed by others
Avoid common mistakes on your manuscript.
References
Armstrong J., Gibbs A., Peakall R. and Weiller G. 1994. The RAPDistance package. Version 1.04. (Available at ftp://life.anu.edu.auJpub/software/RAPDistance).
K. Arumuganathan E. D. Earle (1991) ArticleTitleNuclear DNA content of some important plant species Plant Mol. Biol. Rep. 9 211–215
T. Axelsson C.M. Bowman A.G. Sharpe D.J. Lydiate U. Lagercrantz (2000) ArticleTitleAmphiploid Brassic juncea contains conserved progenitor genomes Genome 43 679–688 Occurrence Handle10.1139/gen-43-4-679 Occurrence Handle10984181 Occurrence Handle1:CAS:528:DC%2BD3cXmsVWiurs%3D
E.J.R. Bohuon D.J. Keith I.A.P. Parkin A.G. Sharpe D.J. Lydiate (1996) ArticleTitleAlignment of the conserved C genomes of Brassica oleracea and Brassica napus Theor. Appl. Genet. 93 833–839 Occurrence Handle10.1007/BF00224083 Occurrence Handle1:CAS:528:DyaK28XntF2mt7k%3D
C.L. Cai J.B. Wang R.C. Jing Y.G. Zhu (2001) ArticleTitleRAPD analysis of the genomic evolution in allopolyploid species in Aegilops Acta Genet. Sin. 28 158–165 Occurrence Handle11233260 Occurrence Handle1:CAS:528:DC%2BD3MXhsVejurs%3D
Y.M. Charpter A. Robertson M.J. Wilkinson G. Ramsay (1996) ArticleTitlePCR analysis of oilseed rape cultivars (Brassica napus L. ssp. oleifera) using 5′-anchored simple sequence repeat (SSR) primers Theor. Appl. Genet. 92 442–447
W.Y. Cheung L. Friesen G.F.W. Rakow G. Seguin-Swartz B.S. Landry (1997) ArticleTitleA RFLP-based linkage map of mustard [Brassica juncea (L.) Czern. et Coss.] Theor. Appl. Genet. 94 841–851 Occurrence Handle1:CAS:528:DyaK2sXks1Krtrc%3D
L. Comai (2000) ArticleTitleGenetic and epigenetic interactions in allopolyploid plants Plant Mol. Biol. 43 387–399 Occurrence Handle10.1023/A:1006480722854 Occurrence Handle10999418 Occurrence Handle1:CAS:528:DC%2BD3cXmsF2js78%3D
C. Dixelius S. Wahlberg (1999) ArticleTitleResistance to Leptosphaeria maculans is conserved in a specific region of the Brassica B genome Theor. Appl. Genet. 99 368–372 Occurrence Handle10.1007/s001220051246
J.T. Doyle J.L. Doyle (1987) ArticleTitleA rapid DNA isolation procedure for small quantities of fresh leaf tissue Phytochem. Bull. 19 11–15
Felsenstein J. 2001. PHYLIP: phylogenetic inference package. Version 3.6a2.1. (Available at http://evolution.genetics.washington.edu/phylip.html)
S. Ghariani N. Trifi-Farah M. Chakroun S. Marghali M. Marrakchi (2003) ArticleTitleGenetic diversity in Tunisian perennial ryegrass revealed by ISSR markers Genet. Resour. Crop Evol. 50 809–815 Occurrence Handle10.1023/A:1025971730574 Occurrence Handle1:CAS:528:DC%2BD3sXns1Cnu70%3D
T. Gladis K. Hammer (1992) ArticleTitleDie Gaterslebener Brassica Kollektion: Brassica juncea, B. napus und B. rapa Feddes Rep. 103 469–507
B. Liu J.M. Vega G. Segal S. Abbo M. Rodova M. Feldman (1998a) ArticleTitleRapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. I. Changes in low-copy non-coding DNA sequences Genome 41 272–277 Occurrence Handle1:CAS:528:DyaK1cXksVSmtLc%3D
B. Liu J.M. Vega M. Feldman (1998b) ArticleTitleRapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. II. Changes in low-copy coding DNA sequences Genome 41 535–542 Occurrence Handle1:CAS:528:DyaK1cXntlWksrs%3D
B. Liu J.F. Wendel (2002) ArticleTitleNon-mendelian phenomena in allopolyploid genome evolution Curr. Genom. 3 589–605
J. Masterson (1994) ArticleTitleStomata size in fossil plants: evidence for polyploidy in majority of angiosperms Science 264 421–424
H. Ozkan A.A. Levy M. Feldman (2001) ArticleTitleAllopolyploidy-induced rapid genomic evolution in the wheat (Aegilops-Triticum) group Plant Cell 13 1735–1747 Occurrence Handle10.1105/tpc.13.8.1735 Occurrence Handle11487689 Occurrence Handle1:CAS:528:DC%2BD3MXmsFKiurg%3D
S. Prakash K. Hinata (1980) ArticleTitleTaxonomy, cytogenetics and origin of crop Brassicareview Opera Bot. 55 4–57
J.D. Palmer C.R. Shield D.B. Cohen T.J. Orton (1983) ArticleTitleChloroplast DNA evolution and the origin of amphidiploid Brassica species Theor. Appl. Genet. 65 181–189 Occurrence Handle10.1007/BF00308062 Occurrence Handle1:CAS:528:DyaL3sXksFSntro%3D
S. Panda J.P. Martin I. Aguinagalde (2002) ArticleTitleChloroplast and nuclear DNA studies in a few members of the Brassica oleracea L. group using PCR–RFLP and ISSR-PCR markers: a population genetic analysis Theor. Appl. Genet. 106 1122–1128 Occurrence Handle12671762
J. Plieske D. Struss G. Robbelen (1998) ArticleTitleInheritance of resistance derived from the B-genome of Brassica against Phoma lingam in rapeseed and the development of molecular markers Theor. Appl. Genet. 97 929–936 Occurrence Handle10.1007/s001220050973 Occurrence Handle1:CAS:528:DyaK1cXotVahtLs%3D
C.E. Quiros J. Hu P. This A.M. Chevre M. Delseny (1991) ArticleTitleDevelopment and chromosomal location of genome-specific markers by the polymerase chain reaction Theor. Appl. Genet. 82 627–632 Occurrence Handle10.1007/BF00226801 Occurrence Handle1:CAS:528:DyaK38XjsFajsQ%3D%3D
H. Shaked K. Kashkush H. Ozkan M. Feldman A.A. Levy (2001) ArticleTitleSequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploids in wheat Plant Cell 13 1749–1759 Occurrence Handle10.1105/tpc.13.8.1749 Occurrence Handle11487690 Occurrence Handle1:CAS:528:DC%2BD3MXmsFKiurk%3D
D.E. Soltis P.S. Soltis (1995) ArticleTitleThe dynamic nature of polyploid genomes Proc. Natl. Acad. Sci. USA. 92 8089–8091 Occurrence Handle7667249 Occurrence Handle1:CAS:528:DyaK2MXnvVymsL0%3D
D.E. Soltis P.S. Soltis (1999) ArticleTitlePolyploidy: origins of species and genome evolution Trends Ecol. Evol. 9 348–352
K. Song P. Lu K. Tang T.C. Osborn (1995) ArticleTitleRapid genomic change in synthetic polyploids of Brassicaits implications for polyploid evolution Proc. Natl. Acad. Sci. USA. 92 7719–7723 Occurrence Handle7644483 Occurrence Handle1:CAS:528:DyaK2MXnsFOnsLk%3D
D. Tautz M. Renz (1984) ArticleTitleSimple sequences are ubiquitous repetitive components of eukaryotic genomes Nucleic Acids Res. 12 4127–4138 Occurrence Handle6328411 Occurrence Handle1:CAS:528:DyaL2cXks1KqurY%3D
M.J. Truco J. Hu J. Sadowski (1996) ArticleTitleInter-and intra-genomic homology of the Brassica genomes: implications for their origin and evolution Theor. Appl. Genet. 93 1225–1233 Occurrence Handle1:CAS:528:DyaK2sXoslaltQ%3D%3D
InstitutionalAuthorNameUN. (1935) ArticleTitleGenomic analysis of Brassica with special reference to the experimental formation of B. napusits particular mode of fertilization Jpn. J. Bot. 7 389–452
J.B. Wang C. Wang S.H. Shi Y. Zhong (2000) ArticleTitleEvolution of parental ITS regions of nuclear rDNA in allopolyploid Aegilops (Poaceae) species Hereditas 133 1–7 Occurrence Handle10.1111/j.1601-5223.2000.t01-1-00001.x Occurrence Handle11206848 Occurrence Handle1:CAS:528:DC%2BD3MXht1Srtrc%3D
E.R. Waters B.A. Schaal (1996) ArticleTitleBiased gene conversion is not occurring among rDNA repeats in the Brassica triangle Genome 39 150–154 Occurrence Handle1:CAS:528:DyaK28XitV2gsbg%3D
J.F. Wendel (2000) ArticleTitleGenome evolution in polyploids Plant Mol. Biol. 42 225–249 Occurrence Handle10.1023/A:1006392424384 Occurrence Handle10688139 Occurrence Handle1:CAS:528:DC%2BD3cXht1Grsrk%3D
A.D. Wolfe A. Liston (1998) Contributions of PCR-based methods to plant systematics and evolutionary biology D.E. Soltis P.S. Soltis J.J. Doyle (Eds) Molecular Systematics of Plants II: DNA Sequencing Kluwer New York 43–86
K. Wolfe M. Morgan-Richards (1998) ArticleTitlePCR markers distinguish Plantago major subspecies Theor. Appl. Genet. 96 282–286
E.A. Zietjiewicz D. Rafalski D. Labuda (1994) ArticleTitleGenome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification Genomics 20 176–183
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Liu, Ah., Wang, Jb. Genomic Evolution of Brassica Allopolyploids Revealed by ISSR Marker. Genet Resour Crop Evol 53, 603–611 (2006). https://doi.org/10.1007/s10722-004-2951-0
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10722-004-2951-0