Abstract
Key message
Superoxide dismutase genes were expressed differentially along with developmental stages of fertilized ovules in Xanthoceras sorbifolium, and the XsMSD gene silencing resulted in the arrest of fertilized ovule development.
Abstract
A very small percentage of mature fruits (ca. 5%) are produced relative to the number of bisexual flowers in Xanthoceras sorbifolium because seeds and fruits are aborted at early stages of development after pollination. Reactive oxygen species (ROS) in plants are implicated in an extensive range of biological processes, such as programmed cell death and senescence. Superoxide dismutase (SOD) activity might be required to regulate ROS homeostasis in the fertilized ovules of X. sorbifolium. The present study identified five SOD genes and one SOD copper chaperone gene in the tree. Their transcripts were differentially expressed along different stages of fertilized ovule development. These genes showed maximum expression in the ovules at 3 days after pollination (DAP), a time point in which free nuclear endosperm and nucleus tissues rapidly develop. The XsCSD1, XsFSD1 and XsMSD contained seven, eight, and five introns, respectively. Analysis of the 5′-flanking region of XsFSD1 and XsMSD revealed many cis-acting regulatory elements. Evaluation of XsMSD gene function based on virus-induced gene silencing (VIGS) indicated that the gene was closely related to early development of the fertilized ovules and fruits. This study suggested that SOD genes might be closely associated with the fate of ovule development (aborted or viable) after fertilization in X. sorbifolium.
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Introduction
Xanthoceras sorbifolium, a member of the family Sapindaceae, is a small- to medium-sized tree that grows up to 10 m in height and is endemic to north China. The seed of X. sorbifolium contains ca. 34% edible oil of high quality that can be used for various purposes including as feedstock for the production of biodiesel (Zhou and Liu 2012). The trees produce only a very small percentage of mature fruits (ca. 5%) relative to the number of bisexual flowers because seeds are aborted at the early stages of development after pollination, resulting in the abortion of young fruits and severely low seed yield (Zhou et al. 2017). To date, little is known about the cytological and molecular mechanisms of the abortion of fruits and fertilized ovules in X. sorbifolium.
Reactive oxygen species (ROS) are regarded as inevitable byproducts of normal cell metabolism and are continually generated in chloroplasts, mitochondria, peroxisomes, and glyoxysomes (Suzuki et al. 2012; Singh et al. 2016). ROS are highly reactive and toxic and can lead to the oxidative destruction of cell structures and molecules (Sandalio et al. 2013). However, potentially harmful ROS are also used as signaling molecules and have been implicated in an extensive range of biological processes such as biotic and abiotic stress responses, embryo sac development, senescence, programmed cell death, and hormonal and systematic signaling (Tsukagoshi et al. 2010; María et al. 2013; Singh et al. 2016). The dual role of ROS is mainly dependent on the ROS level and site of action. ROS fluctuations and homeostasis are regulated by a complex network of ROS production and scavenging that operates in various subcellular compartments (Mittler et al. 2011; Gupta et al. 2017).
The superoxide dismutases (SODs; EC 1.15.1.1) are the first line of antioxidant enzyme defense systems against ROS and they catalyze the dismutation of superoxide anion (O2−) to molecular oxygen (O2) and hydrogen peroxide (H2O2) (McCord and Fridovich 1988). Three different metal-containing SOD enzymes are found in plant tissues (Kliebenstein et al. 1998). These SODs are the products of different genes and they are classified by the redox metal cofactors in the active site into three families, namely copper–zinc SOD (CuZnSOD, CSD), manganese SOD (MnSOD, MSD) and iron SOD (FeSOD, FSD). Multiple SODs are present for the removal of O2− in various compartments of plant cells where O2− radicals are generated (Kliebenstein et al. 1998).
SOD isoenzyme activity might be required to regulate ROS homeostasis along different stages of development of fertilized ovules in X. sorbifolium. This regulation might be closely associated with the fate of ovule development (aborted or viable) in the plant. To test this hypothesis, we cytologically examined the development of X. sorbifolium ovules at various stages of post-fertilization and identified full-length cDNAs of SOD genes. The genomic sequences of XsCSD1, XsFSD1 and XsMSD genes were isolated. To further understand the transcriptional regulatory role of XsSOD genes, XsFSD1 and XsMSD 5′-flanking sequences were isolated by thermal asymmetric interlaced PCR (TAIL-PCR), and the cis-acting regulatory elements of XsSOD promoters were analyzed. We used quantitative real-time polymerase chain reaction (qRT-PCR) to analyze the pattern of expression of SOD genes during the development of fertilized ovules.
We tested the application of the Tobacco rattle virus (TRV)-based virus-induced gene silencing (VIGS) system in young fruits of X. sorbifolium. TRV-XsMSD constructs were capable of silencing XsMSD expression, resulting in the abortion of the young fruits and the ovules after pollination. These results indicated that the XsMSD gene might be required for appropriate development of the fertilized ovules in X. sorbifolium.
Materials and methods
Plant materials
Ten-year-old trees of X. sorbifolium were located in the Botanical Garden, Institute of Botany, Chinese Academy of Sciences. Bisexual flowers were hand cross-pollinated and ovules of different ages, from young ovule until mature seed, were sampled for various experimental purposes.
Cytological analysis of fertilized ovules
The sampled ovules were fixed with 2.5% glutaraldehyde in 0.05 M phosphate buffer (pH 7.2). The specimens were left in the fixative for 2–4 h at room temperature and then overnight at 4 °C. The material was dehydrated through a graded acetone series and embedded in Spurr’s resin (Spurr 1969). Semithin sections (1 µm thick) were cut with a diamond knife on a Leica Ultracut R. The sections were stained with 0.5% toluidine blue O and observed with a light microscope.
Protein extraction and SOD activity assay
The fertilized ovules were ground with 150 mM of Tris–HCl (pH 7.2) and the homogenate was centrifuged at 18,000g at 4 °C for 15 min. Total protein (50 mg) was separated on a 10% nondenaturing polyacrylamide gel in Tris-Gly buffer (pH 8.3) and determined by Coomassie blue staining. The gel was incubated in 750 µM of nitroblue tetrazolium (NBT) solution for 15 min, rinsed with distilled water, and transferred to 100 mM of potassium phosphate buffer (pH 7.0) containing 0.028 mM of riboflavin and 28 mM of TEMED (N,N,N′,N′-tetramethyl-ethylenediamine) for another 15 min. After being washed with distilled water, the gel was illuminated with 400 µmol m−2 s−1 to initiate the photochemical reaction. The SOD activity was verified by KCN or H2O2 treatment (Pan et al. 1999).
The unit of SOD activity was defined as the amount of enzyme that inhibited the nitroblue tetrazolium photoreduction by 50% (Beauchamp and Fridovich 1971). SOD activity values are given in units per mg of protein. The results of three biological replicates were used for statistical analysis.
RNA isolation, cDNA synthesis, reverse transcription-PCR and cDNA cloning
Total RNA was isolated from the fertilized ovules with a TRIzol Reagent Kit (Invitrogen, Carlsbad, CA) according to the manufacturer’s protocol. cDNA synthesis was performed with cDNA Reverse Transcription Kits (Applied Biosystems). The coding region of SODs was amplified with the primers presented in Supplementary Table S1. The PCR program was the following: 95 °C for 5 min and 40 × (95 °C for 20 s, 60 °C for 10 s, 72 °C for 30 s); and final elongation 72 °C for 7 min. All the amplicons were gel-purified, ligated into the pTZ57R/T cloning vector (Thermo FisherScientific) and cloned in XL1-Blue E. coli cells. Positively screened clones were sequenced on an ABI PRISM 3700 DNA Analyzer (Applied Biosystems).
Expression analysis by quantitative real-time PCR (qRT-PCR)
qRT-PCR was performed with the StepOnePLUS™ Real-Time system (Applied Biosystems) and SYBR Green Reagents (Applied Biosystems). Samples contained 10 µL of 2 × SYBR Green Master Mix, 0.4 µL each of forward and reverse primers of 10 µM of concentration, and 1 µL of synthesized cDNA to make the final reaction volume of 20 µL. We used the X. sorbifolium Actin-β gene for the internal control and normalization to calculate fold changes in gene expression of five SOD genes and one SOD copper chaperone gene. The relative expression levels of all samples were carried out in three biological replicates. All gene-specific primers used for qRT-PCR are presented in Supplementary Table S1.
Genomic amplification of the XsSOD genes
Genomic sequences of XsCSD1, XsFSD1 and XsMSD were generated from the DNA template using PCR with forward and reverse primers presented in Supplementary Table S1, designed from their mRNA sequences. The PCR product was directly sequenced. The 5′-flanking sequences of XsFSD1 and XsMSD genes were amplified by TAIL-PCR with the GenomeWalker™ Kit (TaKaRa). The gene-specific primers XsMSD-GW-R1, XsMSD-GW-R2 and XsMSD-GW-R3 (Supplementary Table S1) were designed on the basis of the above SOD genomic sequences. The PCR products were separated by 1.2% agarose gel electrophoresis. The purified DNA fragments were cloned into the pMD18-T vector (TaKaRa) and sequenced.
Sequence analysis
Amino acid sequences of the XsSOD genes were deduced and analyzed with the ExPASy Protparam tool (Wilkins et al. 1999). The BLAST program (http://www.ncbi.nlm.nih.gov) was used to search for homologues of the SOD genes from other plants. Multiple alignments were carried out with the ClustalW program (http://www.ebi.ac.uk/clustalw/). Phylogenetic analysis was performed according to the neighbor-joining method (Saitou and Nei 1987) using MEGA 5.02 (Kumar et al. 2004) with 1000 bootstrap replicates. An analysis for transcription response elements was carried out using the PlantCARE database (Lescot et al. 2002).
VIGS assays
A 350 bp fragment of XsMSD cDNA was amplified using the primers presented in Supplementary Table S1. The purified PCR products were digested with EcoRI and KpnI and ligated to pTRV2, resulting in the plasmid pTRV2-XsMSD. The plasmids were sequenced to verify correct insertion of the fragment and were then transformed into Agrobacterium tumefaciens GV3101. The cultures containing pTRV1 and pTRV2/pTRV2-XsMSD constructions were mixed in a 1:1 ratio, and then 1 mL of culture was injected into the base of the inflorescence axial 2 d after cross-pollination. Three independent biological replicates were performed for each treatment.
To monitor the expression of the XsMSD transcript in the pTRV2-XsMSD-inoculated fruits, total RNA of the pollinated ovules of the XsMSD-VIGS and pTRV2-empty inflorescences was extracted using an RNeasy Plant Mini Kit (Qiagen, Hilden, Germany). cDNA synthesis was conducted as described above with 250 ng of total RNA. qRT-PCR was performed with cDNA corresponding to 10 ng of total RNA in a 20 µL of reaction volume. The reaction mixture was prepared using SYBR Green Reagents (Applied Biosystems) and loaded into a StepOnePLUS™ Real-Time system (Applied Biosystems, Foster City, CA, USA). Three replications for each sample were used in the real-time analyses. Relative expression was determined by normalization against the X. sorbifolium Actin-β gene. The primers are presented in Supplementary Table S1.
Statistical analysis
Statistical analyses were conducted using the SPSS 16.0 software package (SPSS Inc, Chicago, IL, USA). Differences between the means were considered statistically significant difference at P < 0.05.
Results
Cytology of development of the fertilized ovules in X. sorbifolium
After fertilization, the amphitropous ovule of X. sorbifolium contains a long, curved embryo sac that is embedded within the massive nucellar tissue (Fig. 1a). The outer integument between the micropyle and chalaza at the raphal side becomes thickened by local periclinal and anticlinal divisions at the early stage of embryo sac development. Repeated divisions result in the formation of a radially stretched bulge that extends towards the embryo sac (Fig. 1a). The ovule grows rapidly after 8 DAP, and a considerable part of the volume of the ovule is taken up by the formation and enlargement of a liquid-filled vesicle at the chalazal end of the embryo sac. The inner cells of the nucellus that border the embryo sac rapidly undergo breakdown after 12 DAP (Fig. 1b). Several files of richly protoplasmic nucellar cells (hypostase) converge upon the chalazal tip of the embryo sac, suggesting a main route by which the vesicle may be nourished (Fig. 1a). These cells form a global appearance when other nucellar cells adjacent to the embryo sac disintegrated (Fig. 1c).
A few endosperm-free nuclei occur in the embryo sac within 48 h after pollination. Endosperm-free nuclei rapidly divide from 3 DAP to 13 DAP (Fig. 1a, c). With active mitosis, several hundred endosperm-free nuclei are produced and they become more or less evenly dispersed in a thin layer of cytoplasm around the periphery of the embryo sac. The cellular endosperm is observed at the micropylar part of the embryo sac at the early stage of global embryo 17 DAP (Fig. 1d). In the vesicle of the chalazal end of the embryo sac, no endosperm cell wall formation takes place.
SOD activity in the fertilized ovules of X. sorbifolium
Our nondenaturing PAGE enzyme assays identified three SOD activities in the fertilized ovules of X. sorbifolium (Fig. 2). The identities of the SOD activity bands were tested by preincubating the gels with well-characterized SOD inhibitors: KCN and H2O2. The results suggest that the band with the slowest mobility is MnSOD, the second band is FeSOD, and the fastest band is CuZnSOD. Three SOD isozyme activities were detected in all samples tested.
SOD activity staining in the gel indicated that FeSOD appeared as the dominant band and its activity exceeded that of MnSOD and CuZnSOD at various stages of development of the fertilized ovules (Fig. 2a). MnSOD, FeSOD and CuZnSOD activity displayed the highest level in the ovules at 18, 10 and 24 DAP, respectively (Fig. 3). The level of MnSOD activity remained relatively constant in the different stages of ovule development. The CuZnSOD activity level increased 2.6-fold from 3 to 24 DAP (Fig. 3a). The activity level of FeSOD and CuZnSOD markedly changed at the early stages of development of the fertilized ovules (Fig. 3a, b).
Organization of X. sorbifolium SOD genes
From the transcriptomic sequencing database of the fertilized ovules in X. sorbifolium (Zhou and Zheng 2015), we identified five putative SOD gene sequences, including two CuZnSOD, two FeSOD, one MnSOD and one CCS (copper chaperone for SOD). These sequences were named XsCSD1, XsCSD2, XsFSD1, XsFSD2, XsMSD and XsCCS (accession numbers MG322607, MG322609, MG322611, MG322613, MG322616, and MG322605, respectively). The phylogenetic analysis indicates that the SOD genes could be grouped into two clearly defined clades, based on function and location. CuZnSODs belong to the first clade and MnSOD and FeSODs are grouped into the second clade. XsCCS and AtCCS form a subgroup belonging to the first clade (Fig. 4).
The cDNA of XsCSD1 is 1218 bp long with an open-reading frame (ORF) of 459 bp encoding a protein of 152 amino acids (Fig. S1A). We used mRNA from the fertilized ovules of X. sorbifolium to perform RT-PCR amplifications. The obtained amplicons were cloned and sequenced. The sequence (accession number MG322606) corresponded to the expected coding sequence of XsCSD1. The XsCSD1 contained two CuZnSOD family signature motifs (G115FHLHEYGDTT125 and G209NAGGRLACGVV220). All the amino acids involved in the coordination of the copper (His-117, His-119, His-134 and His-191) and zinc (His-134, His-142, His-151 and Asp-154) were very well conserved in the reported CuZnSOD sequences, as were the two cysteines (Cys-128 and Cys-217) that were involved in a single disulfide bond (Fig. S2A). An N-terminal chloroplastic transit peptide sequence was predicted by ChloroP (http://www.cbs.dtu.dk/services/ChloroP) and TargetP (http://www.cbs.dtu.dk/services/TargetP), which indicates that XsCSD1 probably locates in the chloroplast. Phylogenetic analysis also indicates that XsCSD1 and other known or proposed plastid-targeted CuZnSODs are grouped into a clade (Fig. S3).
The XsCSD2 cDNA is 1556 bp long and contains a 456-bp ORF encoding a 151 amino acids hypothetical protein that contains all of the conserved amino acids required for CuZnSOD activity (Fig. S1B). No signal peptide sequences were predicted by the ChloroP and the TargetP, indicating that the XsCSD2 probably locates in the cytoplasm (Fig. S2B). Phylogenetic analysis also indicated that the XsCSD2 clusters with the cytosolic CuZnSOD clade (Fig. S3), suggesting that it is cytosolic.
The XsFSD1 cDNA contained a 933-nucleotide ORF encoding a predicted 310-amino acid protein with an amino-terminal chloroplastic transit peptide of 40 amino acids (Fig. S1C). The amplicons obtained by RT-PCR were cloned and sequenced. The sequence (accession number MG322610) agreed with the expected coding sequence of XsFSD1. The XsFSD1 had three FeSOD family signature motifs (F121NNAAQAWNH130, F175GSGWAWLC183, and D229VWEHAYY236), and four putative metal-binding sites for iron (His-78, His-130, Asp-229 and His-233) that mediated its catalytic activity (Fig. S2C).
The XsFSD2 cDNA has a 759-nucleotide ORF. The deduced protein sequence is 252-amino acids long and contains all of the conserved amino acids for a functional FeSOD protein (Fig. S1D). No signal peptide sequence was predicted, indicating that XsFSD2 is probably located in the cytoplasm (Fig. S2D).
The XsMSD cDNA is 1382 bp long and contains a 540-bp ORF encoding a hypothetical protein of 229 amino acids (Fig. S1E). The amplicons obtained by RT-PCR were cloned and sequenced. The sequence (Accession Number MG322614) corresponded to the expected coding sequence of XsMSD. The XsMSD possessed the characteristic Mn-SOD family signature (D190VWEHAYY197) and four clearly conserved residues coordinating Mn (His-53, His-101, Asp-190 and His-194) in the expected alignment positions (Fig. S2E). This protein contained an amino-terminal mitochondrial transit peptide with a potential cleavage site at amino acid position 25.
The full-length cDNA of XsCCS contains an open-reading frame (ORF) of 750 nucleotides (Fig. S1F). The deduced amino acid sequence shares 77% identity to that of AtCCScyt (a cytosolic copper chaperone for SOD, CCS) in A. thaliana. Similar to AtCCScyt, XsCCS contains a N-terminal ATX1 domain in which there is a copper-binding consensus MXCXXC region found in the copper transporting ATPases and the cytosolic copper chaperones ATX1 (Fig. S4). The analyses suggest that the XsCCS may be a cytosolic copper chaperone for SOD.
Genomic structure and characterization of XsSODs
This study identified the genomic sequences of XsCSD1, XsFSD1, and XsMSD (accession numbers MG322608, MG322615, and MG322612, respectively) with lengths of 4060, 2587 and 3135 bp, respectively (Fig. 5). To investigate the numbers and positions of the exons and introns in these XsSOD genes, we compared each full-length cDNA sequence with their corresponding genomic DNA sequence. The XsCSD1 gene contains a 3952-bp segment spanning from the ATG translation start site to the stop codon. This gene consists of eight exons that were interrupted by seven introns (Fig. 5a). The coding sequence of the genomic gene matched with the corresponding cDNA sequence.
The FSD1 gene is comprised of nine exons separated by eight introns (Fig. 5b). The coding sequence of the genomic gene clearly matched with its cDNA counterpart. The XsMSD gene contains six exons and five introns (Fig. 5c), which is consistent with the MnSOD genes identified from other plant species (Fink and Scandalios 2002). The exons of XsMSD have identical or similar sizes to those of MSD genes from Dimocarpus longan, a member of the family Sapindaceae (Lin and Lai 2013), and Brassica napus. Exons 2 and 3 had the same length (47 and 126 bp, respectively) in the MnSOD genes of many plant species examined, such as D. longan (FJ590954.4), Arabidopsis (At3g10920), Zea mays (NC_024464.1), and B. napus (NW_013650564.1).
Promoters of XsFSD1 and XsMSD genes
To investigate regulatory signals for X. sorbifolium SOD gene expression, the potential proximal promoter regions of XsFSD1 and XsMSD were amplified and sequenced by the genome walking method. Transcription factor-binding motifs were predicted with the PlantCare database. The XsFSD1 promoter is 1230 bp of the 5′-flanking region upstream from the ATG translation start site. Analysis of the 5′-flanking region of XsFSD1 reveals six types of cis-acting regulatory elements involved in light responsiveness (Fig. S5A). Six hormone-responsive elements involved in responses to auxin (TGA-element), salicylic acid (TCA-element), methyl jasmonate (CGTCA-motif), abscisic acid (ABRE) and gibberellins (GARE-motif and P-box) were identified in the XsFSD1 proximal promoter region. We also found several stress-responsive regulatory elements including the anaerobic response element (ARE), MYB binding site involved in drought inducibility (MBS), heat shock element (HSE), and low-temperature stress responsiveness (LTR).
The investigation of the XsMSD promoter revealed a 995 bp segment of the 5′- flanking region upstream from the ATG translation start site. The PlantCare program also predicted many cis-acting regulatory elements in the 5′-flanking region of XsMSD (Fig. S5B), including light-responsive elements (Box II, G box, GAG motif, and Sp1), hormone-responsive elements involved in the abscisic acid responsiveness (ABRE) and in salicylic acid responsiveness (TCA-element), the antioxidant response element (ARE), HSEs, MBS, TC-rich repeats.
Expression profile of XsSOD genes in the fertilized ovules of X. sorbifolium
Quantitative RT-PCR analysis was used to determine the expression profile of 5 SOD genes (XsCSD1, XsCSD2, XsFSD1, XsFSD2 and XsMSD) and a copper SOD chaperone gene along with developmental stages of X. sorbifolium-fertilized ovules. The six genes tested were widely expressed in the ovules of all the stages examined. Generally, the mRNA levels of each gene varied in the ovule of different stages. All the genes showed maximum expression in the ovules at 3 DAP (Fig. 6), a time point at which free nuclear endosperm rapidly develop and the majority of nucleus cells were conducting active division.
In the XsCSD1 gene, mRNA levels were markedly decreased between 3 and 8 DAP (Fig. 6a). The low expression level of the XsCSD1 gene was relatively constant from 21 to 29 DAP, a period in which the cellular endosperm and young embryo developed. The expression profile of XsCSD2 is somewhat similar to that of XsCSD1. The XsCSD2 mRNA level was significantly upregulated at 29 DAP compared with that of 21 DAP and 24 DAP (Fig. 6b).
The expression level of XsFSD1 was very high in the early developmental stages before 8 DAP and decreased dramatically later (Fig. 6c). XsFSD2 expression was conspicuously downregulated after it was highly expressed at 3 DAP (Fig. 6d).
XsMSD expression is slightly reduced at 6 DAP after high expression at 3 DAP (Fig. 6e). The XsMSD mRNA level markedly dropped at 8 DAP and then significantly increased again at 10 DAP. Thereafter, the level of XsMSD transcripts was dramatically reduced. The expression patterns of XsCCS were basically similar to those of XsCSD1 from 6 to 29 DAP (Fig. 6f).
Reduced expression of XsMSD leads to abortion of the fertilized ovules
To examine the role of the XsMSD gene during development of fertilized ovules in X. sorbifolium, we conducted an experiment in which we inoculated inflorescences at 2 DAP with pTRV2-XsMSD plus pTRV1 plasmids aimed to silence the XsMSD gene. Of the inflorescences inoculated with pTRV2-XsMSD (N = 50), 42 aborted inflorescences were observed approximately 15 days after inoculation, suggesting successful silencing of XsMSD during the early stages of fruit development. No abnormal phenotypes were found in control inflorescences inoculated with pTRV2-empty plus pTRV1. pTRV2-XsMSD-inoculated inflorescences showed degenerated endosperm development in all the ovules examined (N = 100) (Fig. 7). Mock-treated (pTRV2-empty) inflorescences were nearly undistinguishable from untreated inflorescences with respect to the development of fertilized ovules, suggesting no visible viral effects in this plant at the ovule development level. RT-PCR analyses confirmed a downregulation of endogenous XsMSD mRNA levels in the ovules of pTRV2-XsMSD inflorescences compared to those of the mock-treated inflorescences (Fig. 8). To confirm that the reduced expression level of XsMSD transcripts in the pTRV2-XsMSD ovules was due to viral vectors, our RT-PCR analysis validated the presence of TRV1 and TRV2 transcripts in control ovules (inoculated with pTRV1 plus pTRV2-empty plasmids) and pTRV2-XsMSD ovules (inoculated with pTRV1 plus pTRV2-XsMSD plasmids; Fig. 9).
Discussion
Multiple SOD genes in X. sorbifolium
Plants contain multiple SOD isozymes. Many unique and highly compartmentalized SODs have been biochemically and molecularly characterized in plants to date (Momcilovic et al. 2014). The present study identified three families of SOD genes (CuZnSOD, FeSOD, and MnSOD) in the fertilized ovules of X. sorbifolium. This plant expresses at least five SOD genes encoding proteins targeted to at least three subcellular compartments: chloroplasts, cytoplasm, and mitochondria. It is likely that each SOD protein may protect against a subset of oxidative stresses and that a variety of SODs are deployed to fully combat endogenous and environmental stresses.
In silico analysis indicated two isoforms of CuZnSODs (XsCSD1 and XsCSD2) localized in the cytosol and the chloroplasts in X. sorbifolium, respectively. There is no significant sequence identity between chloroplastic XsCSD1 and cytosolic XsCSD2 (61% identity, query cover = 65%, E value = 5e−66). They are differently compartmentalized; however, these two proteins may function similarly, but in different tissues and at different times.
FeSODs have initially been thought of as localized essentially in the plastid organelle within the plants or algae (Van Camp et al. 1990), but a non-chloroplastic FeSOD isozyme was later found to be localized in the mitochondria in wheat and in the nucleus of Sesbania rostrata in association with chromatin (Srivalli and Khanna-Chopra 2001). In legume nodules, an original group of FeSODs with cytosolic localization has been detected in soybean and cowpea plants (Moran et al. 2003). The present studies identified two isoforms of FeSODs with cytosolic and chloroplastic locations in X. sorbifolium, respectively. These two types of XsFSDs are expressed differentially in the fertilized ovules depending on the stage after pollination. Plastidic XsFSD1 mRNA levels were significantly higher during 3 to 8 DAP than during 10 to 29 DAP, while cytosolic XsFSD2 mRNA levels were significantly higher at 3 and 29 DAP compared with during 6 to 24 DAP.
A copper SOD chaperone gene in X. sorbifolium
Copper in the CuZnSOD protein plays a catalytic role in dismutation of superoxide to molecular oxygen and peroxide (Forman and Fridovich 1973). Intracellular copper trafficking is mediated by unique chaperones functioning to deliver this metal to copper-containing proteins. Lys7, ATX1, and COX17 were identified as copper chaperones in yeast (Saccharomyces cerevisiae), and they are responsible for copper incorporation into CuZnSOD (Glerum et al. 1996; Horecka et al. 1995; Lin et al. 1997).
The copper chaperone for SOD (CCS) in Arabidopsis contains three functionally distinct protein domains: ATX1-like domain, central domain, and C-terminal domain (Chu et al. 2005; Cohu et al. 2009). One AtCCS gene encodes both the cytosolic and chloroplastic forms of AtCCS and activates CuZnSOD activities at different subcellular locations (Chu et al. 2005; Huang et al. 2012). Similar to AtCCS, XsCCS also contains a central domain which is flanked by an ATX1-like domain and a C-terminal domain. The ATX1-like and the C-terminal domain contain a putative copper-binding motif MXCXXC and a CXC motif, respectively. In addition, the central domain shares 30% sequence identity with XsCSD2. These data suggested that the XsCCS in X. sorbifolium could have similar functions to the AtCCS in Arabidopsis. Our RT-PCR analysis indicated a high expression for the copper SOD chaperone gene at the early stage of the ovule development after pollination in X. sorbifolium, suggesting an important role in free nuclear endosperm development.
Expression of the SOD genes during development of the fertilized ovules in X. sorbifolium
The RT-PCR analysis in the fertilized ovules of X. sorbifolium indicated that all the SOD genes and the XsCCS gene showed the highest expression at 3 DAP, a time point in which free nuclear endosperm rapidly develop, and the majority of nucleus cells are conducting the most active division, suggesting that oxygen consumption and related metabolism were the highest and ROS formation was favored. The highest expression of SODs at this time point can scavenge the rapidly producing ROS and provides protection against oxidative stress. However, during cellular endosperm development (18–29 DAP), their mRNA levels decreased. It is likely that the XsSOD genes play a crucial role in redox regulation of cell proliferation at the early developmental stages of the fertilized ovules in X. sorbifolium.
Activity of the XsSOD isoenzymes in X. sorbifolium
Various XsSOD isoenzymes showed different activity levels at different developmental stages of the fertilized ovules in X. sorbifolium. During the exponential phase of endosperm-free nucleus mitosis at 10 DAP, XsFSD activity markedly increased. The activity of the XsMSD isoenzyme was relatively low in the early developmental stages of fertilized ovules, started to increase with age and reached the peak at 18 DAP, a time point in which cellular endosperm began to form, suggesting some possible roles in cellularization of free nuclear endosperm. The increase in XsMSD enzyme activity could be indicative of increased production of reactive oxygen species in mitochondria and a build-up of a protective mechanism to reduce oxidative damage triggered by rapid endosperm cell division and PCD in the nucellar tissue of ovules. Different SOD isoenzymes might play different roles in different ovule developmental stages. The fact that the SOD proteins do not mirror the pattern of SOD transcript expression suggests that there is a translational or posttranslational regulation of the SODs.
Genomic characterization of the XsSOD genes
The promoter regions of the FSD gene in X. sorbifolium and D. longan share some common features (Lin and Lai 2013). For example, the FSD genes in these two members of the Sapindaceae family contain hormone-responsive elements involved in response to methyl jasmonate (TGACG-motif), gibberellins (P-box), and stress-responsive regulatory elements such as MBS (MYB binding site involved in drought inducibility), a cis-acting regulatory element required for endosperm expression (Skn-1_motif). The functional importance of these sites is not clear at this time. Previous studies indicated that KUODA1 (KUA1), a MYB-like TF, functions as a positive regulator of cell expansion during leaf development by altering apoplastic ROS homeostasis in A. thaliana (Lu et al. 2014). ROS homeostasis controls expansion of the cell and the final size of the organ. The MYB binding site in the 5′-flanking region of the XsFSD1 gene suggested the possibility of regulation in ROS homeostasis during development of the fertilized ovules of X. sorbifolium.
The XsMSD promoter region contains typical CAAT and TATA boxes. They were also found in the promoter region of the D. longan MnSOD gene but were missing in the wheat MnSOD. The MnSOD is not only expressed constitutively but is also extremely responsive to a variety of endogenous and exogenous stress stimuli (Wang et al. 2004; Li et al. 2009). Intense light resulted in increased expression of maize MnSOD (White and Scandalios 1988). Five light-responsive elements (Box II, G-box, GAG-motif, Sp1 and chs-Unit 1 m1) were identified in the promoter region of the XsMSD. The XsMSD promoter region also contained many cis-acting regulatory elements, such as MBS, ARE, 5′UTR Py-rich stretch, and circadian, which are shared with that of the D. longan MSD and GCN4_motif, AAGAA-motif, and G-box, which are shared with that of the monocot wheat MSD. Such a high level of homology in the 5′-flanking sequence of the MnSOD genes suggests that intense evolutionary factors have preserved key regulatory regions for this gene.
TRV-based VIGS of the XsMSD resulted in fruit abortion
It is generally difficult to use a transgenic approach for the evaluation of gene function in fruit trees. Even if transgenic plants are obtained, it is impossible to evaluate sexual reproduction traits during a short time due to the long juvenile phase of the trees. This study tested the application of the TRV-based virus vector system in X. sorbifolium inflorescence, resulting in the transcriptional silencing of the MSD gene of the fertilized ovules within the flowers co-infiltrated with pTRV1 and pTRV2. The XsMSD gene silencing led to the arrest of fertilized ovule development and the abortion of the young fruits. This work provided direct evidence that the MSD gene is closely related to early development of the fertilized ovules and fruits in X. sorbifolium. Our results suggested the possible application of the VIGS system for functional studies of the genes related to seed development.
Conclusions
This work revealed different activity levels of various XsSOD isoenzymes at different developmental stages of the fertilized ovules in X. sorbifolium. Five SOD genes (XsCSD1, XsCSD2, XsFSD1, XsFSD2 and XsMSD) and a copper SOD chaperone gene were widely expressed in the ovules of all the stages examined and their mRNA levels varied along with the developmental stages. The transcriptional silencing of the XsMSD gene resulted in the arrest of fertilized ovule development. The present data suggest for the first time that SOD genes might be closely associated with the fate of ovule development (aborted or viable) after fertilization in X. sorbiforlium.
Author contribution statement
QZ conceived and designed the experiments; QZ performed the experiments; QZ and QC analyzed the data; QZ wrote the manuscript.
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Acknowledgements
We would like to thank Jie Wen and Fengqin Dong for technical help. This work was supported by the National Natural Science Foundation of China (30972344, 31370611 and 31570680) and Beijing Natural Science Foundation (6172028).
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Communicated by Qiaochun Wang.
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Zhou, Q., Cai, Q. The superoxide dismutase genes might be required for appropriate development of the ovule after fertilization in Xanthoceras sorbifolium. Plant Cell Rep 37, 727–739 (2018). https://doi.org/10.1007/s00299-018-2263-z
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DOI: https://doi.org/10.1007/s00299-018-2263-z