Abstract
Fermentation is one of the oldest methods of food processing and accounts for a substantial proportion of human foods, including not only staple foods such as bread, cereal porridges or fermented legumes but also fermented vegetables, meats, fish and dairy, alcoholic beverages as well as coffee, cocoa and condiments such as vinegar, soy sauce and fish sauces. Adding the regional varieties to these diverse product categories makes for an almost immeasurable diversity of fermented foods. The periodic table of fermented foods aims to map this diversity on the 118 entries of the periodic table of chemical elements. While the table fails to represent the diversity of fermented foods, it represents major fermentation substrates, product categories, fermentation processes and fermentation organisms. This communication not only addresses limitations of the graphical display on a “periodic table of fermented foods”, but also identifies opportunities that relate to questions that are facilitated by this graphical presentation: on the origin and purpose of food fermentation, which fermented foods represent “indigenous” foods, differences and similarities in the assembly of microbial communities in different fermentations, differences in the global preferences for food fermentation, the link between microbial diversity, fermentation time and product properties, and opportunities of using traditional food fermentations as template for development of new products.
Key Points
• Fermented foods are produced in an almost immeasurable diversity.
• Fermented foods were mapped on a periodic table of fermented foods.
• This table facilitates identification of communalities and differences of products.
Similar content being viewed by others
Avoid common mistakes on your manuscript.
Introduction
Fermented foods have been defined as “foods made through desired microbial growth and enzymatic conversions of food components” (Marco et al. 2021), which emphasizes microbial conversions as the defining characteristic of fermented foods. Fermented foods account for a considerable portion of foods eaten by humans, including not only staple foods such as bread, cereal porridges or beverages and fermented legumes or legume proteins but also fermented meats, fish and dairy, fermented vegetables and alcoholic beverages as well as specialty products and condiments such as vinegar, coffee, cocoa, soy sauce and fish sauces (Steinkraus 1997; Hutkins 2019). Fermentation is one of the oldest methods of food processing and has been used since the Neolithic revolution, the transition from hunter-gatherer societies to agricultural societies about 14,000 years ago (Hayden et al. 2013; Arranz-Otaegui et al. 2018). Among the fermented foods, the cereal products bread and beer are the oldest fermented food products for which archeological evidence is available (Hayden et al. 2013; Arranz-Otaegui et al. 2018). Just about any agricultural crop or animal product including fruits, cereals, vegetables, milk, fish and meats is fermented at some place in the world, with insect protein as one of few commodities for which traditional fermentation processes have not been described.
The microbiology of food fermentation, which initiated the transition from traditional, indigenous knowledge systems to scientific knowledge systems for production of fermented foods, was first described in 1857, when Louis Pasteur attributed alcoholic fermentation to Saccharomyces cerevisiae (Pasteur, 1857 as reproduced by (Brock 1992). The industrial production of baker’s yeast for bread leavening started in Vienna only 10 years later (Gélinas 2010). Lactic acid bacteria were first isolated by Joseph Lister in the 1870ties (Lister 1877); a comprehensive description of lactic acid bacteria in food fermentations, which remained relevant for much of the twentieth century, was published in 1919 (Orla-Jensen 1919). Undefined bacterial starter cultures for baking and dairy fermentations have been available since the late nineteenth or early twentieth century (Brandt 2007), followed by defined strain cultures for dairy, meat, wine and vegetable fermentations. Food cultures are not only of economic importance but have also been recognized in relation to their beneficial effect on human health (Marco et al. 2017; Wastyk et al. 2021), as microbial cell factories (Sun et al. 2015) and as model systems to study ecology, physiology, evolution and domestication of microbes (Wolfe and Dutton 2015; Gallone et al. 2016; Duar et al. 2017b). Evidence for domestication of eukaryotic food fermenting microbes has been provided by large-scale comparative genomic analyses of several fermentation organisms including Saccharomyces cerevisiae, Aspergillus oryzae and Penicillium roqueforti. In eukaryotes, domestication resulted in distinct phylogenetic clades that are composed exclusively of isolates from food fermentations with a long history of back-slopping. These isolates also exhibit physiological and genetic traits that differentiate the strains from their “wild” ancestors (Gibbons et al. 2012; Gallone et al. 2016; Dumas et al. 2020). Evidence for domestication of prokaryotes, however, remains much less convincing (van de Guchte et al. 2006; Zheng et al. 2015; Kelleher et al. 2017).
Despite the economic impact, cultural significance and scientific relevance of fermented foods, only few dedicated textbooks provide an overview on the diversity of fermented foods (Gänzle 2019; Hutkins 2019). Since 2014, I have started to map the diversity of fermented foods on the template of the periodic table of chemical elements, a process that was initiated over a Friday afternoon discussion with colleagues that explored whether a “Periodic Table of Fermented Foods” may be a useful tool for teaching of the science of food fermentations at the University of Alberta. An initial version of the periodic table of fermented foods was published in 2015 (Gänzle 2015) but the table continues to be modified with input from collaborators, colleagues and students in the Nutrition and Food Science undergraduate program of the University of Alberta. This communication will briefly present the Periodic Table of Fermented Foods and outline its limitations. It also aims to outline whether graphical presentation of the diversity of fermented foods to match the periodic table of chemical elements gives rise to relevant scientific questions and hypotheses.
Limitations of the periodic table of fermented foods
The periodic table of chemical elements represents a natural law of the periodicity of the properties of the chemical elements (Balarew 2019). In contrast, a natural law of the periodicity of fermented foods does not exist. Moreover, despite all efforts to reduce the author’s ignorance on the diversity of fermented foods, to prioritize those fermented foods for which data is available in the scientific literature, and to avoid cultural or geographic bias in the selection of foods that are represented on the periodic table, the presentation remains incomplete and the selection remains to some extend arbitrary. A table with 118 entries cannot represent the diversity of fermented foods. To provide three examples, the periodic table lists 21 cheeses; however, France alone is thought to produce more than 1000 distinct cheese varieties and a comparable number of varieties is produced in other countries with a tradition of cheese making (e.g. http://www.formaggio.it/). Africa is represented on the table with only 10 entries; however, a continent on which 2000 different languages are spoken can be expected to have as many, or more, different fermented foods. Vegetables that are fermented in a brine with about 2% NaCl are represented by a single entry, sauerkraut, but many different products that employ a comparable fermentation process but use different ingredients, spices or condiments and have different designations are widely consumed in Europe, South Asia and East Asia (Table 1).
Opportunities of organizing the diversity in a periodic table of fermented foods
What is the merit, then, of omission of a majority of fermented foods for display of 118 entries in a “periodic table”? First, the process of omission forces to emphasize similarities of different products over differences. For example, fermented vegetables are produced by cutting, brining in salt solutions, followed by fermentation in a closed container at ambient temperature (Ashaolu and Reale 2020). The best-known products are sauerkraut, which represents this product category in Fig. 1, and kimchi, but numerous other products are produced with similar methods and with comparable fermentation organisms in Europe and Asia (Table 1). Likewise, mahewu is produced in Zimbabwe by inoculating a slurry prepared from cooked corn flour with millet malt as a source of amylolytic and proteolytic enzymes, and of fermentation microbiota (Pswarayi and Gänzle 2019). Comparable processes and principles are used to prepare cereal beverages in other African countries (Table 2) (Nout 2009; Franz et al. 2014). From a culinary and cultural perspective, these products are very different; from the perspective of the fermentation process or the principles of the assembly of microbial communities, these products share enough similarities to warrant only a single entry that represents all comparable products.
A graphical display with 118 entries also allows a quick overview on fermentation substrates, products and fermentation organisms that cannot be provided in a larger figure with several thousand entries to fully map the diversity of fermented foods. Some of these questions—which fermentations include acetic acid bacteria? Which type of products are produced from fish? How is red wine produced from colourless cereal flours?—are readily answered by consulting Fig. 1. Other questions that arise from a representative overview rather than a comprehensive display are discussed in more detail below.
Origin and purpose of food fermentation
Publications on fermented foods emphasize the aspect of food preservation and food safety as a motivation for fermenting foods (Nout and Motarjemi 1997; Steinkraus 1997). Preservation is indeed a major aspect in the fermentation of vegetables, dairy products, fish and fermented meats (groups 12 to 18 in Fig. 1). Food fermentations preserve vegetables as a source of vitamins in winter, when fresh vegetables are not available in temperate climates. Fermentation also converts the perishable animal products milk, meat and fish to commodities that can be stored and traded over long distances (Kindstedt 2012). Animal agriculture emerged, however, several thousand years after the cultivation and fermentation of the cereal crops (Rowley-Conwy 2011; Arranz-Otaegui et al. 2018) and preservation is thus an unlikely driver for the first food fermentations during the Neolithic revolution.
A second major reason for fermentation of fruits, tubers and cereals is the human desire for intoxication, which motivates production of alcoholic beverages in virtually all cultures and on all continents (groups 1 through 4, marihuana edibles and spirits in Fig. 1) and has been proposed to be one of the drivers for the first food fermentations in the Natufian (Hayden et al. 2013). Because beer is also a source of energy and nearly isotonic, hydration with low-alcohol beer may be advantageous over water. The notion that medieval city dwellers consumed beer with low ethanol content to avoid contaminated drinking water, however, was identified as a myth (Mortimer 2009; de Fusco et al. 2019).
A third motivation for food fermentations is the facilitation of milling of cereals and removal of anti-nutritive compounds including phenolic compounds, enzyme inhibitors and phytate, and an improved digestibility of plant crops (Gänzle 2020). Replacing a diverse hunter-gatherer diet with cereal grains, legume seeds and tubers is a poor proposition unless the palatability and digestibility of these crops and the availability of micro-nutrients are improved by milling, fermentation and heating (Kayodé et al. 2013; Montemurro et al. 2019). In some cases, fermentation is a necessity to remove toxic plant secondary metabolites, e.g. cyanogenic β-glucosides in cassava (group 5), which cause debilitating disease unless they are removed by fermentation or other suitable processes (Kobawila et al. 2005; Nzwalo and Cliff 2011). Steeping of grains also reduces the effort that is needed for wet milling of the grains (Gänzle and Salovaara 2019), an advantage that remains relevant in areas where cereals are processed at the household level. Examples include mawé and ogi produced in Benin (Houghouigan et al. 1993; Greppi et al. 2013) and koko and kenkey produced in Ghana (Halm et al. 1993; Lei and Jakobsen 2004). Extended steeping of cereal grains not only facilitates wet milling but also initiates fermentation, which continues after the milled grains are further processed to porridges or beverages.
Last but not least, fermented foods such as miso, soy sauce, vinegar, coffee or vanilla are produced with the purpose to please the palate. While some of the products, e.g. soy sauce analogues or coffee, can be produced with alternative enzymatic or chemical processes that do not involve microbial conversions (Suzuki et al. 2017), fermented products avoid the use of ingredients or additives, and often have superior sensory properties.
Few, if any, of the fermented foods are “ethnic” but almost all represent “indigenous” foods
Figure 1 represents the geographic origin of each product in the upper right of each box, which is coloured green if lactic acid bacteria are major members of fermentation microbiota. In recognition to the link of food fermentations to geographic locations and cultures, numerous publications refer to fermented foods outside of Europe and North America as “ethnic fermented foods” (Kwon 2015) or “indigenous fermented foods”. The term “ethnic foods” was defined as “an ethnic group’s or a country’s cuisine” (Kwon 2015) or, in a narrower ethnographic meaning, as “food prepared or consumed by members of an ethnic group as a manifestation of its ethnicity” (Anonymous) and thus includes ancestry in the definition of ethnicity. The term “indigenous”, defined by the Merriam-Webster online Dictionary as “produced (…) in a particular region or environment”, is not specific to nations, countries or ethnicity but accommodates fermented foods that are produced by specific to a particular town or other narrowly defined geographic locations that may or may not relate to ethnicity or nationality.
A vast majority of fermented foods are specific to, or originate from, specific cultures or regions (Fig. 1) and are in some cases a matter of fierce national pride (Jang et al. 2015). This strong link to geography is determined by climate and geography, which determine the availability of fermentation substrates; by the economic constitution of societies, which determines whether fermented foods are produced at the household level, by trades, or in large industrial operations; and by local cultural or religious traditions that define the indigenous knowledge systems on which the fermentation processes are based and the cultural or social context in which fermented foods are consumed (Ströbele 2010). Most fermented foods were produced before scientific knowledge systems were applied for food production. With few exceptions that are discussed below, fermented foods can thus generally be designated as “indigenous foods”.
Community assembly in food fermentations: differences and similarities between different fermentations
Colour coding of the fermented foods informs on the main groups of fermentation organisms; representative microbial species are also indicated. The diversity of fermented foods is matched by the diversity of fermentation organisms. In 2022, an inventory of food cultures with beneficial technological use that has been compiled by the International Dairy Federation included more than 226 bacterial and 95 fungal species (Bourdichon et al. 2012, 2022). The characterization of fermentation microbiota by full shotgun metagenomic sequencing (Cao et al. 2017) and the description of more than 100 new species of food-fermenting organisms (www.lactobacillus.ualberta.ca/) in recent years (Zheng et al. 2020) continue to increase the known diversity of food cultures.
Despite this large diversity of fermentation organisms, common patterns for community assembly can be derived from the periodic table of fermented foods. The assembly of communities of organisms is determined by dispersal, selection, speciation and drift (Vellend 2010). Of these four, drift, designating random events, can be ignored if the totality of fermentations rather than an individual fermentation batch is considered. The relevance of dispersal depends on whether the fermentations is controlled by back-slopping (thick box outline and underlined product name in Fig. 1) (Li and Gänzle 2020) or relies on the microorganisms that are associated with the raw materials or the processing environment (Miller et al. 2019; Pswarayi and Gänzle 2019). Back-slopping eliminates dispersal limitation and allows recruitment of highly specialized and niche-adapted fermentation organisms (Gänzle and Zheng 2019; Marco et al. 2021). Examples include the host-adapted Streptococcus thermophilus, Lactobacillus helveticus and L. delbrueckii in dairy fermentations (Li and Gänzle 2020); the co-existence of Lactobacillus and Limosilactobacillus species, which is characteristic for the intestinal microbiota of many animals but also observed in back-slopped cereal fermentations (Walter 2008; Duar et al. 2017a; Gänzle and Zheng 2019); and the presence of Fructilactobacillus sanfranciscensis, an organism that is likely adapted to insect hosts, in sourdoughs (Gänzle and Zheng 2019). The selective pressure that is exerted by fermentation conditions and raw materials is independent of the geographic location. Each of the three examples indicated above is documented by multiple products from multiple countries representing at least three continents (Fig. 1).
Spontaneous fermentations that are not controlled by back-slopping or starter cultures also exhibit reliable and globally uniform communities of fermentation microbes that have a stable association with the raw material. This is best exemplified with spontaneous plant fermentations, which are characterized by a consistent succession of fermentation microbiota. Spontaneous plant fermentations are initiated by plant-associated Enterobacteriaceae including Cronobacter, Kosakonia, Klebsiella and Citrobacter, which are among the most abundant representatives of commensal plant microbiota (Schmid et al. 2009; Allahverdi et al. 2016; Pavlova et al. 2017; Taulé et al. 2019). Enterobacteriaceae are followed by the more acid-tolerant enterococci, lactococci, Leuconostoc and Weissella species. Eventually, the acid-tolerant Lp. plantarum or pediococci in association with Lm. fermentum or Lv. brevis prevail (Jung et al. 2012; Wuyts et al. 2018; Pswarayi and Gänzle 2019). This succession of microorganisms is comparable at the family level (Enterobacteriaceae) or at the genus level (lactic acid bacteria) for most spontaneous plant fermentations including cereal products or tubers in groups 5 to 7, vegetable fermentations (group 12), and coffee and cocoa (Fig. 1). Community assembly can be manipulated by addition of salt (e.g. Fu-Tsaii, # 112) (Chao et al. 2009) or by addition of acids to inhibit the initial growth of Enterobacteriaceae. Convergence of fermentation communities is also observed for alcoholic fermentations, which all include Saccharomyces cerevisiae as a major fermentation organism. Irrespective of the fermentation substrate, all fermentations that include addition of more than 10% NaCl also include Tetragenococcus halophilus as major fermentation organism (Fig. 1).
Speciation or domestication of bacterial species in food fermentation organisms has not been convincingly demonstrated. Although the molecular clock of bacterial evolution is poorly calibrated (Duchêne et al. 2016), the domestication of bacterial organisms with genetic and physiological traits that differentiate fermentation organisms from their “wild” ancestors likely requires more time than elapsed since the onset of back-slopped food fermentations (Duar et al. 2017b). Eukaryotes evolve with different mechanisms and at a different pace, though, and domestication of food fermenting yeasts and fungi was demonstrated for Aspergillus oryzae from koji fermentation, S. cerevisiae from beer and sourdough, and for Penicillium roqueforti (Gibbons et al. 2012; Gallone et al. 2016; Dumas et al. 2020; Bigey et al. 2021).
In short, the comparison of fermentation microbiota in different fermented foods worldwide demonstrates that, while the fermented products have a strong link to specific regions or countries, the composition of fermentation organisms is globally uniform if comparable substrates and fermentation processes are employed.
North and South, East and West
The periodic table of fermented foods highlights preferences for fermentation substrates and fermentation processes at a global scale (Fig. 1 and Fig. 2). Bread has traditionally been produced in all temperate climates that support cultivation of wheat or rye (Gänzle and Zheng 2019; Arora et al. 2021). In East Asia, steamed bread is preferred (Yan et al. 2019); South Asia, the Middle East and North Africa traditionally produce flat breads; in Europe, bread is baked in loaves. Conversely, fermented cereal foods in Sub-Saharan Africa are consumed predominantly as porridges or non-alcoholic beverages, which are not as common in other parts of the world (Fig. 2) (Nout 2009; Franz et al. 2014). The colour coding in Fig. 2 accounts for the documentation that fermentation cultures that are used in the Americas and Oceania are “immigrants” that were brought by the European that settled on these continents (Salama et al. 1991; Gallone et al. 2016).
In Europe and Africa, starch saccharification to produce alcoholic beverages, non-alcoholic beverages or vinegar is achieved by the use of malt: barley malt in Europe or millet and sorghum malts in Africa. In East Asia, starch saccharification is achieved by microbial saccharification cultures. Koji, a back-slopped and domesticated cultures of Aspergillus soyae or Aspergillus oryzae, is used in Japan (Gibbons et al. 2012). Daqu, a spontaneous fermentation that recruits bacilli, plant-associated Enterobacteriaceae and lactic acid bacteria as well as yeasts and moulds to produce amylases and proteases that hydrolyse starch and proteins in a subsequent mash fermentation, is used in China (Fig. 2) (Zheng et al. 2012; Mu et al. 2014). In addition, the traditional use of Monascus purpureus to produce red- or yellow-coloured cereal foods is unique to South-East Asia (Lin et al. 2008). Efforts to use the organisms in fermentations in Europe and North America have stalled as the production of red or yellow pigments is invariably associated with the production of the mycotoxin citrinin (Patakova 2013).
Milk has traditionally been used for cheese production in Europe, the Mediterranean, the Middle East and the Eurasian Steppes. Communities in Africa and South Asia ferment milk predominantly to yoghurt and comparable set but not strained dairy products (Jans et al. 2017). Conversely, fermentation of legume (soy) protein to diverse products including tempe, natto, sufu or stinky tofu is common on East Asia but not in other regions of the world (Fig. 2) (Han et al. 2004; Nout and Kiers 2005; Inatsu et al. 2006). The use of precipitated soy proteins as fermentation substrate also recruits fermentation organisms that are not observed in other parts of the world, e.g. Rhizopus stolonifer for production of tempe (Nout and Kiers 2005) and Bacillus subtilis, which is used for fermentation of natto (Tsuji et al. 2015).
Fish fermentations have traditionally been used in Scandinavian countries and in South-East Asia. Examples for Scandinavian fermentations include harkarl, fermented shark produced in Iceland, and surströmming in Sweden (Skåra et al. 2015). East Asia produces fermented fish sauces, where the composition of fermentation microbiota is controlled by addition of more than 10% NaCl, and fermented sour fish where the composition of fermentation microbiota is controlled by addition of carbohydrates including starch (rice) or sugars and/or addition of salt (Paludan-Müller et al. 2002). The author is unaware of comparable fermented products in other regions of the world where seafood is available. The production of garum, however, a fish sauce that was produced in ancient Rome but came out of fashion after the fall of the Roman Empire (Corcoran 1963), indicates that this is a question of preference.
Microbial diversity and product properties
The arrangement of selected fermented foods in the periodic table of fermented foods roughly matches the flavor intensity within each groups, with the blandest examples at the left and top and the product with the most intense flavor at the right and bottom (Fig. 1). This arrangement indicates that long fermentation times and/or a diverse fermentation microbiota results in a more intense flavor. The case can be convincingly made with two somewhat exotic examples, surströmming, a fermented fish product from Sweden, and kopi luwak (civet coffee). The fermented fish product surströmming is produced with diverse fermentation organisms that represent several bacterial phyla including Firmicutes, Bacteriodetes, gamma-Proteobacteria and Actinobacteria. The resulting product smells somewhat intense (Belleggia et al. 2020). Kopi luwak is produced by feeding civet cats with coffee fruits and collecting the excreted beans after fermentation by the intestinal microbiota of civet cats. Intestinal microbiota of the civet cat are dominated by acetic acid bacteria, lactic acid bacteria and Enterobacteriaceae (Watanabe et al. 2020), which overlaps with those organisms dominating wet fermentation process of coffee beans (de Melo Pereira et al. 2017) but includes additional organisms as well as digestive enzymes of the civet cat.
The case can also be made with the more commonly consumed fermented products bread and cheese. Long-term cheese ripening recruits non-starter lactic acid bacteria that contribute to flavor formation in addition to the starter cultures (Lo et al. 2018). During cheese ripening, casein is hydrolysed to taste-active peptides and amino acids, in particular glutamate, which can accumulate to levels exceeding the taste threshold more than 500-fold (Toelstede and Hofmann 2008; Hillmann et al. 2016). Straight-dough bread is fermented only with baker’s yeast while sourdough baking includes a contribution of lactic acid bacteria and sourdough yeast, predominantly Kazachstania humilis, to biochemical conversions during bread-making, and generally involves extended fermentation times (Gänzle 2014; Gänzle and Zheng 2019; Arora et al. 2021). In comparison to straight dough bread, sourdough bread is characterized by a greater diversity and higher concentration of taste-active compounds and odour volatiles (Hansen and Schieberle 2005; Zhao et al. 2015). A last example relates to the comparison of two distilled grain liquors, whisky and baijou. Whisky is fermented with S. cerevisiae with a variable contribution of lactobacilli (van Beek and Priest 2000); odorants are additionally derived from the malt, the peat smoke used for drying of the malt and the casks used for maturation (Jeleń et al. 2019). The fermentation process for grain liquors in China includes contributions from diverse microbes including yeasts, fungi, bacilli, gamma-Proteobacteria and beta-Proteobacteria, and Firmicutes which include but are not limited to Lactobacillales (lactic acid bacteria) (Zheng and Han 2016). Again, the higher diversity of microbes that is recruited for baijou fermentation results in a higher diversity and intensity of flavor volatiles (Jeleń et al. 2019; Chen et al. 2021).
Tradition and innovation
The industrialization of food production also resulted in the industrialization of the production of fermented foods. This process generally involved scaling of traditional fermentation processes and transition from traditional, indigenous knowledge systems to scientific knowledge systems; in short, moving from “art to science”. Currently, food fermentations extend to products for which no traditional template exists. In these cases, the periodic table of fermented foods can guide the development of fermentation processes in the absence of a traditional template. Examples include the fermentation of insects (Kewuyemi et al. 2020) or the production of plant cheeses (Jeewanthi and Paik 2018), where information on fermentation of other protein foods (soy, groups 10 and 11; dairy, groups 13–16; and fish and meat, groups 17 and 18) may provide useful information on the use of fermentation organisms and enzymes to improve product quality. Moreover, fermentation of vegetables has re-emerged as a method to provide high-quality food not only at the household level but also by chefs and small start-up companies. The corresponding products are not limited to those for which traditional templates exist (Redzepi and Zilber 2018).
Current commercial relevance for novel, non-traditional fermented foods relate for example to alcohol-free fermented cereal beverages and gluten-free bread. Fermentation of malt with lactic acid bacteria or acetic acid bacteria allows adjusting the level of sweetness, acidity and carbonation or “fizz” to levels that meets consumer’s expectations (Bronnmann and Hoffmann 2017). Non-alcoholic fermented cereal beverages are widely consumed in Africa and, to a lesser extend, in East Europe but not in Central or Western Europe (Taylor 2016). Element # 102, Bionade, provides an example of a non-tradtional fermented “designer” food. Likewise, the development of gluten-free bread in the last two decades necessitated building on information related to traditional fermentation of sorghum, millet or corn fermentations to develop a fermented food for which no traditional template is available (Gallagher et al. 2004).
Concluding remarks
Mapping the diversity of fermented foods on a simple graphical display is impossible in a world that is inhabited by 8 billion humans and where many products are fermented at the household or regional level. The effort to produce such a simple graphical display nevertheless has merit as it not only necessitates acknowledgement of the—largely unknown—diversity but also allows to derive common patterns in the fermentation of products that, at first sight, appear to be very different. Many of the fermented foods contain live fermentation microbes at the time of consumption (groups 6, 7, 12 to 18, and several elements in the group tea, coffee, chocolate, and various beverages). Live microbes that are present in fermented foods are increasingly recognized as contributors to human health even if no strain-specific health claims were established (Marco et al. 2021; Wastyk et al. 2021). The periodic table of fermented foods also provides an indication of the many fermented foods that are likely to please one’s palate but remain to be sampled. Last but not least, many fermented foods negate conventional wisdom and are tasty and healthy.
References
Allahverdi T, Rahimian H, Ravanlou A (2016) First report of bacterial canker in mulberry caused by Citrobacter freundii in Iran. Plant Dis 100:1774
Anonymous Ethnic Cuisines | Encyclopedia.com. (2021) https://www.encyclopedia.com/food/encyclopedias-almanacs-transcripts-and-maps/ethnic-cuisines. Accessed 17 Aug 2021
Arora K, Ameur H, Polo A, Di Cagno R, Rizzello CG, Gobbetti M (2021) Thirty years of knowledge on sourdough fermentation: a systematic review. Trends Food Sci Technol 108:71–83. https://doi.org/10.1016/J.TIFS.2020.12.008
Arranz-Otaegui A, Carretero LG, Ramsey MN, Fuller DQ, Richter T (2018) Archaeobotanical evidence reveals the origins of bread 14,400 years ago in northeastern Jordan. Proc Natl Acad Sci U S A 115:7925–7930. https://doi.org/10.1073/pnas.1801071115
Ashaolu TJ, Reale A (2020) A holistic review on Euro-Asian lactic acid bacteria fermented cereals and vegetables. Microorganisms 8:1176. https://doi.org/10.3390/MICROORGANISMS8081176
Balarew C (2019) The periodic table of chemical elements – history, nature, meaning. Pure Appl Chem 91:2037–2042. https://doi.org/10.1515/PAC-2019-0902
Belleggia L, Aquilanti L, Ferrocino I, Milanović V, Garofalo C, Clementi F, Cocolin L, Mozzon M, Foligni R, Haouet MN, Scuota S, Framboas M, Osimani A (2020) Discovering microbiota and volatile compounds of surströmming, the traditional Swedish sour herring. Food Microbiol 91:103503. https://doi.org/10.1016/J.FM.2020.103503
Bigey F, Segond D, Friedrich A, Guezenec S, Bourgais A, Huyghe L, Agier N, Nidelet T, Sicard D (2021) Evidence for two main domestication trajectories in Saccharomyces cerevisiae linked to distinct bread-making processes. Curr Biol 31:722-732.e5. https://doi.org/10.1016/J.CUB.2020.11.016
Bourdichon F, Budde-Niekiel A, Dubois A, Fritz D, Hatte J-L, Laulund S, McAuliffe O, Ouwehand AC, Yao S, Zgoda A, Zuliani V, Morelli L (2022) Bulletin of the IDF N°514/2022: Inventory of microbial food cultures with safety demonstration in fermented food products – FIL-IDF. https://shop.fil-idf.org/collections/publications/products/bulletin-of-the-idf-n-514-2022-inventory-of-microbial-food-cultures-with-safety-demonstration-in-fermented-food-products. Accessed 26 Mar 2022
Bourdichon F, Casaregola S, Farrokh C, Frisvad JC, Gerds ML, Hammes WP, Harnett J, Huys G, Laulund S, Ouwehand A, Powell IB, Prajapati JB, Seto Y, Ter Schure E, Van Boven A, Vankerckhoven V, Zgoda A, Tuijtelaars S, Hansen EB (2012) Food fermentations: microorganisms with technological beneficial use. Int J Food Microbiol 154:87–97. https://doi.org/10.1016/j.ijfoodmicro.2011.12.030
Brandt MJ (2007) Sourdough products for convenient use in baking. Food Microbiol 24:161–164. https://doi.org/10.1016/j.fm.2006.07.010
Brock TD (1992) Milestones in microbiology. Science Tech Publishers, Madison, Wisconsin
Bronnmann J, Hoffmann J (2017) Product differentiation in the German soft drink market: which attributes matter? 25:968–971 https://doi.org/10.1080/13504851.2017.1388906
Cao Y, Fanning S, Proos S, Jordan K, Srikumar S (2017) A review on the applications of next generation sequencing technologies as applied to food-related microbiome studies. Front Microbiol 0:1829. https://doi.org/10.3389/FMICB.2017.01829
Çetin B (2013) Production of probiotic mixed pickles (Tursu) and microbiological properties. African J Biotechnol 10:14926–14931. https://doi.org/10.4314/ajb.v10i66
Chao SH, Wu RJ, Watanabe K, Tsai YC (2009) Diversity of lactic acid bacteria in suan-tsai and fu-tsai, traditional fermented mustard products of Taiwan. Int J Food Microbiol 135:203–210. https://doi.org/10.1016/J.IJFOODMICRO.2009.07.032
Chen S, Tang J, Fan S, Zhang J, Chen S, Liu Y, Yang Q, Xu Y (2021) Comparison of potent odorants in traditional and modern types of Chinese Xiaoqu liquor (Baijiu) Based on Odor Activity Values and Multivariate Analyses. Foods 2021, Vol 10, Page 2392 10:2392 https://doi.org/10.3390/FOO DS101023 92
Corcoran TH (1963) Roman Fish Sauces. Class J 58:204–210
de Melo Pereira GV, Soccol VT, Brar SK, Neto E, Soccol CR (2017) Microbial ecology and starter culture technology in coffee processing. 57:2775–2788 . https://doi.org/10.1080/10408398.2015.1067759
Duar RM, Frese SA, Lin XB, Fernando SC, Burkey TE, Tasseva G, Peterson DA, Blom J, Wenzel CQ, Szymanski CM, Walter J (2017) Experimental evaluation of host adaptation of Lactobacillus reuteri to different vertebrate species. Appl Environ Microbiol 83:e00132-e217. https://doi.org/10.1128/AEM.00132-17
Duar RM, Lin XB, Zheng J, Martino ME, Grenier T, Pérez-Muñoz ME, Leulier F, Gänzle M, Walter J (2017) Lifestyles in transition: evolution and natural history of the genus Lactobacillus. FEMS Microbiol Rev 41:S27–S48. https://doi.org/10.1093/femsre/fux030
Duchêne S, Holt KE, Weill FX, Le Hello S, Hawkey J, Edwards DJ, Fourment M, Holmes EC (2016) Genome-scale rates of evolutionary change in bacteria. Microb Genomics 2:e000094. https://doi.org/10.1099/MGEN.0.000094
Dumas E, Feurtey A, Rodríguez de la Vega RC, Le Prieur S, Snirc A, Coton M, Thierry A, Coton E, Le Piver M, Roueyre D, Ropars J, Branca A, Giraud T (2020) Independent domestication events in the blue-cheese fungus Penicillium roqueforti. Mol Ecol 29:2639–2660. https://doi.org/10.1111/mec.15359
Franz CMAP, Huch M, Mathara JM, Abriouel H, Benomar N, Reid G, Galvez A, Holzapfel WH (2014) African fermented foods and probiotics. Int J Food Microbiol 190:84–96. https://doi.org/10.1016/j.ijfoodmicro.2014.08.033
de Fusco DO, Madaleno LL, del Bianchi VL, da Bernardo AS, Assis RR, de Teixeira GHA (2019) Development of low-alcohol isotonic beer by interrupted fermentation. Int J Food Sci Technol 54:2416–2424. https://doi.org/10.1111/IJFS.14156
Gadaga TH, Mutukumira AN, Narvhus JA, Feresu SB (1999) A review of traditional fermented foods and beverages of Zimbabwe. Int J Food Microbiol 53:1–11
Gallagher E, Gormley TR, Arendt EK (2004) Recent advances in the formulation of gluten-free cereal-based products. Trends Food Sci Technol 15:143–152. https://doi.org/10.1016/j.tifs.2003.09.012
Gallone B, Steensels J, Prahl T, Soriaga L, Saels V, Herrera-Malaver B, Merlevede A, Roncoroni M, Voordeckers K, Miraglia L, Teiling C, Steffy B, Taylor M, Schwartz A, Richardson T, White C, Baele G, Maere S, Verstrepen KJ (2016) Domestication and divergence of Saccharomyces cerevisiae beer yeasts. Cell 166:1397-1410.e16. https://doi.org/10.1016/j.cell.2016.08.020
Gänzle M (2019) Fermented foods. In: Michael P. Doyle MP, Diez-Gonzalez F, Hill C (eds) Food microbiology: fundamentals and frontiers, 5th edn. wiley, 855–900
Gänzle M, Salovaara H (2019) Lactic acid bacteria in cereal-based products. In: Vinderola G, Ouwehand AC, Salminen S, von Wright A (eds) Lactic acid bacteria: Microbiological and functional aspects. CRC Press, Fith Editi, pp 199–213
Gänzle M, Zheng J (2019) Lifestyles of sourdough lactobacilli – do they matter for microbial ecology and bread quality? Int J Food Microbiol 302:15–23. https://doi.org/10.1016/j.ijfoodmicro.2018.08.019
Gänzle MG (2014) Enzymatic and bacterial conversions during sourdough fermentation. Food Microbiol 37:2–10. https://doi.org/10.1016/j.fm.2013.04.007
Gänzle MG (2015) Lactic metabolism revisited: Metabolism of lactic acid bacteria in food fermentations and food spoilage. Curr Opin Food Sci 2:106–117. https://doi.org/10.1016/j.cofs.2015.03.001
Gänzle MG (2020) Food fermentations for improved digestibility of plant foods – an essential ex situ digestion step in agricultural societies? Curr Opin Food Sci 32:124–132. https://doi.org/10.1016/j.cofs.2020.04.002
Gélinas P (2010) Mapping early patents on baker’s yeast manufacture. Compr Rev Food Sci Food Saf 9:483–497. https://doi.org/10.1111/J.1541-4337.2010.00122.X
Gibbons JG, Salichos L, Slot JC, Rinker DC, McGary KL, King JG, Klich MA, Tabb DL, McDonald WH, Rokas A (2012) The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae. Curr Biol 22:1403–1409. https://doi.org/10.1016/J.CUB.2012.05.033
Greppi A, Rantsiou K, Padonou W, Hounhouigan J, Jespersen L, Jakobsen M, Cocolin L (2013) Determination of yeast diversity in ogi, mawè, gowé and tchoukoutou by using culture-dependent and -independent methods. Int J Food Microbiol 165:84–88. https://doi.org/10.1016/J.IJFOODMICRO.2013.05.005
Halm M, Lillie A, Sørensen AK, Jakobsen M (1993) Microbiological and aromatic characteristics of fermented maize doughs for kenkey production in Ghana. Int J Food Microbiol 19:135–143. https://doi.org/10.1016/0168-1605(93)90179-K
Han BZ, Cao CF, Rombouts FM, Nout MJR (2004) Microbial changes during the production of Sufu - A Chinese fermented soybean food. Food Control 15:265–270. https://doi.org/10.1016/S0956-7135(03)00066-5
Hansen A, Schieberle P (2005) Generation of aroma compounds during sourdough fermentation: applied and fundamental aspects. Trends Food Sci Technol 16:85–94. https://doi.org/10.1016/J.TIFS.2004.03.007
Hayden B, Canuel N, Shanse J (2013) What was brewing in the natufian? An archaeological assessment of brewing technology in the Epipaleolithic. J Archaeol Method Theory 20:102–150. https://doi.org/10.1007/s10816-011-9127-y
Hillmann H, Behr J, Ehrmann MA, Vogel RF, Hofmann T (2016) Formation of kokumi-enhancing γ-glutamyl dipeptides in Parmesan cheese by means of γ-glutamyltransferase activity and stable isotope double-labeling studies. J Agric Food Chem 64:1784–1793. https://doi.org/10.1021/acs.jafc.6b00113
Houghouigan DJ, Nout MJR, Nago CM, Houben JH, Rombouts FM (1993) Characterization and frequency distribution of species of lactic acid bacteria involved in the processing of mawè, a fermented maize dough from Benin. Int J Food Microbiol 18:279–287. https://doi.org/10.1016/0168-1605(93)90151-6
Hutkins RW (2019) Microbiology and technology of fermented foods, 2nd Edition. Wiley-Blackwell, Hoboken, New Jersey
Inatsu Y, Nakamura N, Yuriko Y, Fushimi T, Watanasiritum L, Kawamoto S (2006) Characterization of Bacillus subtilis strains in Thua nao, a traditional fermented soybean food in northern Thailand. Lett Appl Microbiol 43:237–242. https://doi.org/10.1111/J.1472-765X.2006.01966.X
Jang DJ, Chung KR, Yang HJ, Kim KS, Kwon DY (2015) Discussion on the origin of kimchi, representative of Korean unique fermented vegetables. J Ethn Foods 2:126–136. https://doi.org/10.1016/J.JEF.2015.08.005
Jans C, Meile L, Kaindi DWM, Kogi-Makau W, Lamuka P, Renault P, Kreikemeyer B, Lacroix C, Hattendorf J, Zinsstag J, Schelling E, Fokou G, Bonfoh B (2017) African fermented dairy products – overview of predominant technologically important microorganisms focusing on African Streptococcus infantarius variants and potential future applications for enhanced food safety and security. Int J Food Microbiol 250:27–36. https://doi.org/10.1016/J.IJFOODMICRO.2017.03.012
Jeewanthi RKC, Paik HD (2018) Modifications of nutritional, structural, and sensory characteristics of non-dairy soy cheese analogs to improve their quality attributes. J Food Sci Technol 55:4384–4394. https://doi.org/10.1007/s13197-018-3408-3
Jeleń HH, Majcher M, Szwengiel A (2019) Key odorants in peated malt whisky and its differentiation from other whisky types using profiling of flavor and volatile compounds. LWT 107:56–63. https://doi.org/10.1016/J.LWT.2019.02.070
Jun Z, Shuaishuai W, Lihua Z, Qilong M, Xi L, Mengyang N, Tong Z, Hongli Z (2018) Culture-dependent and -independent analysis of bacterial community structure in Jiangshui, a traditional Chinese fermented vegetable food. LWT 96:244–250. https://doi.org/10.1016/J.LWT.2018.05.038
Jung JY, Lee SH, Lee HJ, Seo HY, Park WS, Jeon CO (2012) Effects of Leuconostoc mesenteroides starter cultures on microbial communities and metabolites during kimchi fermentation. Int J Food Microbiol 153:378–387. https://doi.org/10.1016/J.IJFOODMICRO.2011.11.030
Kayodé APP, Mertz C, Guyot J-P, Brat P, Mouquet-Rivier C (2013) Fate of phytochemicals during malting and fermentation of type III tannin sorghum and impact on product biofunctionality. J Agric Food Chem 61:1935–1942. https://doi.org/10.1021/JF304967T
Kelleher P, Bottacini F, Mahony J, Kilcawley KN, van Sinderen D (2017) Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation. BMC Genomics 18:267. https://doi.org/10.1186/s12864-017-3650-5
Kewuyemi YO, Kesa H, Chinma CE, Adebo OA (2020) Fermented edible insects for promoting food security in Africa. Insects 11:283. https://doi.org/10.3390/INSECTS11050283
Kindstedt P (2012) Cheese and culture : a history of cheese and its place in western civilization. Chelsea Green Pub, London
Kobawila SC, Louembe D, Keleke S, Hounhouigan J, Gamba C (2005) Reduction of the cyanide content during fermentation of cassava roots and leaves to produce bikedi and ntoba mbodi, two food products from Congo. African J Biotechnol 4:689–696. https://doi.org/10.5897/ajb2005.000-3128
Kwon DY (2015) What is ethnic food? J Ethn Foods 2:1. https://doi.org/10.1016/J.JEF.2015.02.001
Lei V, Jakobsen M (2004) Microbiological characterization and probiotic potential of koko and koko sour water, African spontaneously fermented millet porridge and drink. J Appl Microbiol 96:384–397. https://doi.org/10.1046/j.1365-2672.2004.02162.x
Li Q, Gänzle MG (2020) Host-adapted lactobacilli in food fermentations: impact of metabolic traits of host adapted lactobacilli on food quality and human health. Curr Opin Food Sci 31:71–80. https://doi.org/10.1016/j.cofs.2020.02.002
Lin YL, Wang TH, Lee MH, Su NW (2008) Biologically active components and nutraceuticals in the Monascus-fermented rice: a review. Appl Microbiol Biotechnol 77:965–973. https://doi.org/10.1007/S00253-007-1256-6
Lister J (1877) Introductory address delivered in the Medical Department of King’s College. Br Med J 2:469. https://doi.org/10.1136/BMJ.2.875.465
Liu Z, Li J, Wei B, Huang T, Xiao Y, Peng Z, Xie M, Xiong T (2019a) Bacterial community and composition in Jiang-shui and Suan-cai revealed by high-throughput sequencing of 16S rRNA. Int J Food Microbiol 306 https://doi.org/10.1016/J.IJFOODMICRO.2019a.108271
Liu Z, Peng Z, Huang T, Xiao Y, Li J, Xie M, Xiong T (2019) Comparison of bacterial diversity in traditionally homemade paocai and Chinese spicy cabbage. Food Microbiol 83:141–149. https://doi.org/10.1016/J.FM.2019.02.012
Lo R, Ho VTT, Bansal N, Turner MS (2018) The genetic basis underlying variation in production of the flavour compound diacetyl by Lactobacillus rhamnosus strains in milk. Int J Food Microbiol 265:30–39. https://doi.org/10.1016/J.IJFOODMICRO.2017.10.029
Marco ML, Heeney D, Binda S, Cifelli CJ, Cotter PD, Foligné B, Gänzle M, Kort R, Pasin G, Pihlanto A, Smid EJ, Hutkins RW (2017) Health benefits of fermented foods: microbiota and beyond. Curr Opin Biotechnol 44:94–102. https://doi.org/10.1016/j.copbio.2016.11.010
Marco ML, Sanders ME, Gänzle M, Arrieta MC, Cotter PD, De Vuyst L, Hill C, Holzapfel W, Lebeer S, Merenstein D, Reid G, Wolfe BE (2021) Hutkins RW (2021) The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on fermented foods. Nat Rev Gastroenterol Hepatol 183(18):196–208. https://doi.org/10.1038/s41575-020-00390-5
Miller ER, Kearns PJ, Niccum BA, Schwartz JOM, Ornstein A, Wolfe BE, O’Mara Schwartz J, Ornstein A, Wolfe BE, Schwartz JOM, Ornstein A, Wolfe BE (2019) Establishment limitation constrains the abundance of lactic acid bacteria in the Napa cabbage phyllosphere. Appl Environ Microbiol 85:e00269-e319. https://doi.org/10.1128/AEM.00269-19
Montemurro M, Pontonio E, Gobbetti M, Rizzello CG (2019) Investigation of the nutritional, functional and technological effects of the sourdough fermentation of sprouted flours. Int J Food Microbiol 302:47–58. https://doi.org/10.1016/j.ijfoodmicro.2018.08.005
Mortimer I (2009) The time traveler’s guide to medieval England : a handbook for visitors to the fourteenth century. Simon & Schuster, New York
Mu X, Wu Y, Fan W, Wu Q, Wang D (2014) Solid state fermentation alcoholic beverages. In: Chen J, Zhu J (eds) Solid state fermentation for foods and beverages. CRC Press, Boca Raton, pp 288–299
Mugula JK, Nnko SAM, Narvhus JA, Sørhaug T (2003) Microbiological and fermentation characteristics of togwa, a Tanzanian fermented food. Int J Food Microbiol 80:187–199
Mukisa I, Nsiimire DG, Byaruhanga YB, Muyanja CMBK, Lansgrud T, Narvhus JA (2010) Obushera: descriptive sensory profiling and consumer acceptability. J Sens Stud 25:190–214. https://doi.org/10.1111/J.1745-459X.2009.00272.X
Mukisa I, Porcellato D, Byaruhanga YB, Muyanja CMBK, Rudi K, Langsrud T, Narvhus JA (2012) The dominant microbial community associated with fermentation of Obushera (sorghum and millet beverages) determined by culture-dependent and culture-independent methods. Int J Food Microbiol 160:1–10. https://doi.org/10.1016/J.IJFOODMICRO.2012.09.023
Nguyen DTL, Van Hoorde K, Cnockaert M, De Brandt E, Aerts M, Binh Thanh L, Vandamme P (2013) A description of the lactic acid bacteria microbiota associated with the production of traditional fermented vegetables in Vietnam. Int J Food Microbiol 163:19–27. https://doi.org/10.1016/J.IJFOODMICRO.2013.01.024
Nout MJR (2009) Rich nutrition from the poorest–cereal fermentations in Africa and Asia. Food Microbiol 26:685–692
Nout MJR, Kiers JL (2005) Tempe fermentation, innovation and functionality: update into the third millenium. J Appl Microbiol 98:789–805. https://doi.org/10.1111/J.1365-2672.2004.02471.X
Nout MJR, Motarjemi Y (1997) Assessment of fermentation as a household technology for improving food safety: a joint FAO/WHO workshop. Food Control 8:221–226. https://doi.org/10.1016/S0956-7135(97)00021-2
Nzwalo H, Cliff J (2011) Konzo: from poverty, cassava, and cyanogen intake to toxico-nutritional neurological disease. PLoS Negl. Trop. Dis. 5:e1051
Orla-Jensen S (1919) The lactic acid bacteria. Andr Fred Høst and Son, Copenhagen
Paludan-Müller C, Valyasevi R, Huss HH, Gram L (2002) Genotypic and phenotypic characterization of garlic-fermenting lactic acid bacteria isolated from som-fak, a Thai low-salt fermented fish product. J Appl Microbiol 92:307–314. https://doi.org/10.1046/J.1365-2672.2002.01544.X
Patakova P (2013) Monascus secondary metabolites: production and biological activity. J Ind Microbiol Biotechnol 40:169–181. https://doi.org/10.1007/s10295-012-1216-8
Patra JK, Das G, Paramithiotis S, Shin HS (2016) Kimchi and other widely consumed traditional fermented foods of Korea: a review. Front Microbiol 7:1493. https://doi.org/10.3389/FMICB.2016.01493/BIBTEX
Pavlova AS, Leontieva MR, Smirnova TA, Kolomeitseva GL, Netrusov AI, Tsavkelova EA (2017) Colonization strategy of the endophytic plant growth-promoting strains of Pseudomonas fluorescens and Klebsiella oxytoca on the seeds, seedlings and roots of the epiphytic orchid, Dendrobium nobileLindl. J Appl Microbiol 123:217–232
Phiri S, Schoustra SE, van den Heuvel J, Smid EJ, Shindano J, Linnemann A (2019) Fermented cereal-based Munkoyo beverage: processing practices, microbial diversity and aroma compounds. PLoS ONE 14:e0223501. https://doi.org/10.1371/journal.pone.0223501
Pswarayi F, Gänzle MG (2019) Composition and origin of the fermentation microbiota of mahewu, a Zimbabwean fermented cereal beverage. Appl Environ Microbiol 85:e03130-e3218. https://doi.org/10.1128/AEM.03130-18
Redzepi R, Zilber D (2018) The Noma guide to fermentation : foundations of flavor. Artisan Books, New York, New York
Rowley-Conwy P (2011) Westward Ho! The spread of agriculture from Central Europe to the Atlantic. Curr Anthropol 52:S431–S451. https://doi.org/10.1086/658368
Salama M, Sandine W, Giovannoni S (1991) Development and application of oligonucleotide probes for identification of Lactococcus lactis subsp. cremoris. Appl Environ Microbiol 57:1313–1318. https://doi.org/10.1128/aem.57.5.1313-1318.1991
Schmid M, Iversen C, Gontia I, Stephan R, Hofmann A, Hartmann A, Jha B, Eberl L, Riedel K, Lehner A (2009) Evidence for a plant-associated natural habitat for Cronobacter spp. Res Microbiol 160:608–614. https://doi.org/10.1016/j.resmic.2009.08.013
Skåra T, Axelsson L, Stefánsson G, Ekstrand B, Hagen H (2015) Fermented and ripened fish products in the northern European countries. J Ethn Foods 2:18–24. https://doi.org/10.1016/J.JEF.2015.02.004
Steinkraus KH (1997) Classification of fermented foods: worldwide review of household fermentation techniques. Food Control 8:311–317. https://doi.org/10.1016/S0956-7135(97)00050-9
Ströbele W (2010) Zur Geschichte der Reutlinger Mutschel und ihrer Gebraäuche. https://publikationen.uni-tuebingen.de/xmlui/handle/10900/84636. Accessed 27 Mar 2022
Sun Z, Harris HMB, McCann A, Guo C, Argimón S, Zhang W, Yang X, Jeffery IB, Cooney JC, Kagawa TF, Liu W, Song Y, Salvetti E, Wrobel A, Rasinkangas P, Parkhill J, Rea MC, O’Sullivan O, Ritari J, Douillard FP, Paul Ross R, Yang R, Briner AE, Felis GE, De Vos WM, Barrangou R, Klaenhammer TR, Caufield PW, Cui Y, Zhang H, O’Toole PW (2015) Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera. Nat Commun 6:8322. https://doi.org/10.1038/ncomms9322
Suzuki H, Nakafuji Y, Tamura T (2017) New method to produce kokumi seasoning from protein hydrolysates using bacterial enzymes. J Agric Food Chem 65:10514–10519. https://doi.org/10.1021/ACS.JAFC.7B03690
Tamang B (2010) Tamang JP (2010) In situ fermentation dynamics during production of gundruk and khalpi, ethnic fermented vegetable products of the Himalayas. Indian J Microbiol 501(50):93–98. https://doi.org/10.1007/S12088-010-0058-1
Tamang JP, Tamang B, Schillinger U, Franz CMAP, Gores M, Holzapfel WH (2005) Identification of predominant lactic acid bacteria isolated from traditionally fermented vegetable products of the Eastern Himalayas. Int J Food Microbiol 105:347–356. https://doi.org/10.1016/J.IJFOODMICRO.2005.04.024
Taulé C, Luizzi H, Beracochea M, Mareque C, Platero R, Battistoni F (2019) The Mo-and Fe-nitrogenases of the endophyte Kosakonia sp. UYSO10 are necessary for growth promotion of sugarcane. Ann Microbiol 69:741–750
Taylor JRN (2016) Fermentation: foods and nonalcoholic Beverages. Encycl Food Grains Second Ed 3–4:183–192. https://doi.org/10.1016/B978-0-12-394437-5.00136-4
Toelstede S, Hofmann T (2008) Quantitative studies and taste re-engineering experiments toward the decoding of the nonvolatile sensometabolome of Gouda cheese. J Agric Food Chem 56:5299–5307. https://doi.org/10.1021/jf800552n
Tsuji S, Tanaka K, Takenaka S, Yoshida K (2015) Enhanced secretion of natto phytase by Bacillus subtilis. Biosci Biotechnol Biochem 79:1906–1914. https://doi.org/10.1080/09168451.2015.1046366
van Beek S, Priest FG (2000) Decarboxylation of substituted cinnamic acids by lactic acid bacteria isolated during malt whisky fermentation. Appl Environ Microbiol 66:5322–5328. https://doi.org/10.1128/AEM.66.12.5322-5328.2000
van de Guchte M, Penaud S, Grimaldi C, Barbe V, Bryson K, Nicolas P, Robert C, Oztas S, Mangenot S, Couloux A, Loux V, Dervyn R, Bossy R, Bolotin A, Batto J-M, Walunas T, Gibrat J-F, Bessières P, Weissenbach J, Ehrlich SD, Maguin E (2006) The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution. PNAS 103:9274–9279. https://doi.org/10.1073/pnas.0603024103
Vellend M (2010) Conceptual synthesis in community ecology. Q Rev Biol 85:183–206
Walter J (2008) Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research. Appl Environ Microbiol 74:4985–4996. https://doi.org/10.1128/AEM.00753-08
Wastyk HC, Fragiadakis GK, Perelman D, Dahan D, Merrill BD, Yu FB, Topf M, Gonzalez CG, Van Treuren W, Han S, Robinson JL, Elias JE, Sonnenburg ED, Gardner CD, Sonnenburg JL (2021) Gut-microbiota-targeted diets modulate human immune status. Cell 184:4137-4153.e14. https://doi.org/10.1016/J.CELL.2021.06.019
Watanabe H, Ng CH, Limviphuvadh V, Suzuki S, Yamada T (2020) Gluconobacter dominates the gut microbiome of the Asian palm civet Paradoxurus hermaphroditus that produces kopi luwak. PeerJ 8:e9579. https://doi.org/10.7717/PEERJ.9579/SUPP-3
Wolfe BE, Dutton RJ (2015) Fermented foods as experimentally tractable microbial ecosystems. Cell 161:49–55. https://doi.org/10.1016/J.CELL.2015.02.034
Wuyts S, Van Beeck W, Oerlemans EFM, Wittouck S, Claes IJJ, De Boeck I, Weckx S, Lievens B, De Vuyst L, Lebeer S (2018) Carrot juice fermentations as man-made microbial ecosystems dominated by lactic acid bacteria. Appl Environ Microbiol 84:00134–00218. https://doi.org/10.1128/AEM.00134-18
Yan B, Sadiq FA, Cai Y, Fan D, Chen W, Zhang H, Zhao J (2019) Microbial diversity in traditional type I sourdough and jiaozi and its influence on volatiles in Chinese steamed bread. LWT 101:764–773. https://doi.org/10.1016/j.lwt.2018.12.004
Zhao CJ, Kinner M, Wismer W, Gänzle MG (2015) Effect of glutamate accumulation during sourdough fermentation with Lactobacillus reuteri on the taste of bread and sodium-reduced bread. Cereal Chem 92:224–230. https://doi.org/10.1094/CCHEM-07-14-0149-R
Zheng J, Wittouck S, Salvetti E, Franz CMAP, Harris HMB, Mattarelli P, O’Toole PW, Pot B, Vandamme P, Walter J, Watanabe K, Wuyts S, Felis GE, Gänzle MG, Lebeer S (2020) A taxonomic note on the genus Lactobacillus: description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae. Int J Syst Evol Microbiol 70:2782–2858. https://doi.org/10.1099/ijsem.0.004107
Zheng J, Zhao X, Lin XB, Gänzle M (2015) Comparative genomics Lactobacillus reuteri from sourdough reveals adaptation of an intestinal symbiont to food fermentations. Sci Rep 5:1–11. https://doi.org/10.1038/srep18234
Zheng X-W, Yan Z, Han B-Z, Zwietering MH, Samson RA, Boekhout T, Nout MJR (2012) Complex microbiota of a Chinese “Fen” liquor fermentation starter (Fen-Daqu), revealed by culture-dependent and culture-independent methods. Food Microbiol 31:293–300
Zheng XW, Han BZ (2016) Baijiu (白酒), Chinese liquor: history, classification and manufacture. J Ethn Foods 3:19–25. https://doi.org/10.1016/J.JEF.2016.03.001
Acknowledgements
Felicitas Pswarayi, Ying Hu and Lynn McMullen are acknowledged for helpful discussions in assembly of the periodic table of fermented foods over the past years and in assembly of the manuscript.
Funding
The Canada Research Chairs program is acknowledged for funding.
Author information
Authors and Affiliations
Contributions
MGG is responsible for all aspects of the manuscript.
Corresponding author
Ethics declarations
Ethical approval
This article does not contain any studies with human participants or animals performed by any of the authors.
Conflict of interest
The author declares no competing interests.
Additional information
Publisher's note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
About this article
Cite this article
Gänzle, M. The periodic table of fermented foods: limitations and opportunities. Appl Microbiol Biotechnol 106, 2815–2826 (2022). https://doi.org/10.1007/s00253-022-11909-y
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00253-022-11909-y