Abstract
Renal fibrosis is the most common outcome of chronic kidney disease (CKD), while the pathogenesis of renal fibrosis is not fully understood. In this study, we first showed that the progress of renal fibrosis was positively related to serum levels of indoxyl sulfate, a typical protein-bound toxin, and that there was a close correlation between serum indoxyl sulfate levels and β-catenin expression in the kidneys (r = 0.908, p < 0.001) of CKD patients. We then demonstrated that intraperitoneal injections of indoxyl sulfate (100 mg/kg/day) for 4 weeks in uninephrectomized mice explicitly induced renal fibrosis, which was accompanied by a significant activation of Wnt/β-catenin signaling. In vitro investigations in human renal tubular HK-2 cells revealed that indoxyl sulfate exhibited a potent ability to induce Wnt/β-catenin activation through the downregulation of sFRP5, a gene that codes for an extracellular antagonist of Wnt signaling, by increasing the DNA methylation level of its promoter CpG islands. The increased expression of DNA methyltransferases following the activation of ROS/ERK1/2 signaling was responsible for the DNA hypermethylation of sFRP5 induced by indoxyl sulfate. Conversely, treatment with 5-aza-2′-deoxycytidine, an inhibitor of DNA methyltransferases, significantly reduced indoxyl sulfate-induced sFRP5 downregulation and Wnt/β-catenin activation. In vivo, intraperitoneal injections of recombinant sFRP5 protein or 5-aza-2′-deoxycytidine substantially alleviated renal fibrosis in indoxyl sulfate-treated uninephrectomized mice. Our results suggest that indoxyl sulfate promotes renal fibrosis through the induction of DNA hypermethylation of sFRP5, and thereafter the activation of Wnt/β-catenin signaling. These findings provide new insights into the pathogenesis of renal fibrosis in CKD patients.
Key messages
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IS induces renal fibrosis by increasing ß-catenin expression in CKD mice.
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IS-induced Wnt signaling activation is due to sFRP5 hypermethylation in HK-2 cells.
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ROS/ERK1/2 signaling activation is involved in IS-induced sFRP5 hypermethylation.
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sFRP5 upregulation attenuates IS-induced renal fibrosis by inhibiting Wnt signaling.
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Introduction
Nowadays, the prevalence of CKD is a global challenge. Renal fibrosis, which is characterized by the abnormal accumulation of extracellular matrix in the renal interstitium, is the most common outcome of CKD [1,2,3]. Previous studies have shown that traditional risk factors, including immunological dysfunction, renin-angiotensin-aldosterone system activation, dyslipidemia, and hyperglycemia play important roles in the development of renal fibrosis in CKD patients [4,5,6,7], whereas the influence of the uremic milieu on the progression of renal fibrosis has not been well demonstrated. It has been shown that the uremic toxins accumulated in the blood of patients with CKD [8], and the renal fibrosis progresses rapidly during this period. In recent years, many studies have reported the deleterious effects of uremic toxins, especially protein-bound toxins such as indoxyl sulfate (IS) and p-cresol (PCS), on the functions of the kidneys and the cardiovascular system in patients with CKD [9,10,11,12]. Interestingly, in addition to inhibiting the proliferation of tubular cells, protein-bound toxins have also been demonstrated to increase collagen deposition in the renal tubule interstitium in uninephrectomized mice [13,14,15], suggesting that uremic toxins may contribute to the development of renal fibrosis in patients with CKD. However, the in-depth molecular mechanisms underlying the role of uremic toxins in promoting renal fibrosis are largely unknown.
Accumulating evidence indicates that the Wnt/β-catenin signaling pathway plays a key role in the process of renal fibrosis and that renal fibrosis can be significantly ameliorated by Wnt antagonists [16, 17], but whether Wnt/β-catenin signaling is involved in IS-induced renal fibrosis has never been revealed. As previously reported, the secreted frizzled-related proteins (sFRPs) function as Wnt antagonists by binding and inactivating Wnt ligands, and inhibition of sFRPs leads to Wnt/β-catenin activation [18]. The aberrant DNA methylation of sFRPs has been demonstrated to be involved in the activation of Wnt/β-catenin signaling, promoting the progress of various cancers [19, 20]. Previously reported, epigenetic DNA methylation, which is usually triggered by inflammation and oxidative stress in uremic milieus has attracted attention [21, 22]. Moreover, protein-bound toxins with the capacity to initiate oxidative stress have been reported to induce DNA hypermethylation of target genes [23]. Therefore, it is necessary to investigate the effects of protein-bound toxins on the DNA methylation of sFRP genes and the role of these effects in the progression of renal fibrosis.
In this study, we analyzed the relationship between IS and the activation of Wnt/β-catenin signaling to deeply explore the pathogenesis of CKD-associated renal fibrosis. Our results revealed the critical role of sFRP5 DNA hypermethylation in IS-induced renal fibrosis.
Results
Positive correlation between serum IS levels and renal fibrosis in CKD patients
Thirty-four patients with estimated glomerular filtration rates (eGFRs) of 6.92–148.42 ml/min/1.73 m2 were enrolled in this study. The eGFRs, serum IS levels, and degree of renal fibrosis in the kidneys were detected separately. Serum IS levels and fibrotic area with Masson’s trichrome staining both gradually increased with the decline of eGFR (Fig. 1a, b). It was found that the progression of renal fibrosis was positively related to increases in serum IS (Fig. 1c). These data suggest that a correlative relationship may exist between IS and the progression of renal fibrosis in CKD patients.
IS injection-induced renal fibrosis is accompanied by increased expression of β-catenin in the kidneys of CKD mice
To confirm the relationship between IS and the activation of Wnt/β-catenin signaling in the kidneys during the progression of renal fibrosis, we treated uninephrectomized CD-1 mice with IS (100 mg/kg per day) via intraperitoneal injections for 4 weeks and found that IS injection induced a 5-fold increase in the serum level of IS (Fig. 2a). Meanwhile, significant increases in β-catenin, active-β-catenin, and α-SMA expression levels and collagen deposition were observed in the remaining kidney in IS-treated CKD mice (Fig. 2b–d). We also found that IS inhibited the expression of klotho, which is an endogenous antagonist of Wnt/β-catenin signaling. In addition, we further explored the expression of klotho in IS-treated HK-2 cells. The decreased expression of klotho was observed in IS-treated HK-2 cells, as revealed by western blot (Fig. 2e). We then detected the direct effect of IS on the expression of β-catenin in cultured HK-2 cells and found that β-catenin expression was upregulated at translational levels by IS in a dose-dependent manner (Fig. 2f). These data suggest that the activation of Wnt/β-catenin signaling may be implicated in IS-induced renal fibrosis.
IS reduces the expression of the Wnt antagonistic gene sFRP5 in renal tubular cells
To investigate the mechanisms underlying the effect of IS on Wnt/β-catenin activation in renal tubular cells, we measured the mRNA expressions of sFRP genes, which negatively regulate the activation of Wnt/β-catenin signaling, in IS-treated HK-2 cells by semi-quantitative PCR. The results indicated that the expression of sFRP1–3 was very weak in HK-2 cells, while the expression of sFRP4 and sFRP5 was strong. Notably, IS suppressed sFRP5 mRNA expression but not sFRP4 in HK-2 cells in a dose-dependent manner (Fig. 3a). Concordantly, a dose-dependent reduction in sFRP5 protein but not sFRP4 expression was also observed in HK-2 cells after IS treatment (Fig. 3b). Next, we detected sFRP5 expression in tubular cells in renal biopsy samples from patients with CKD by immunohistochemical staining. As shown in Fig. 3c, sFRP5 expression was significantly decreased in renal tubular cells from CKD patients with renal fibrosis compared with normal control cells. In addition, a significant reduction in the expression of sFRP5 both at the mRNA and protein level was found in IS-injected CKD mice (Fig. 3d–f). These results indicate that IS has the ability to silence sFRP5 gene expression, which may lead to the activation of Wnt/β-catenin signaling that contributes to the development of renal fibrosis.
IS downregulates sFRP5 gene expression via DNA hypermethylation
Because the gene expression of sFRP is usually regulated by DNA methylation and IS has the potential to induce DNA methylation [23], we then measured the effect of IS on sFRP5 DNA methylation. As shown in Fig. 4a, the DNA methylation level of sFRP5 was markedly elevated in HK-2 cells after treatment with IS at concentrations of 10 and 50 mg/L. In addition, the mRNA expressions of DNA methyltransferases (DNMTs), including DNMT1, DNMT3a, and DNMT3b were significantly upregulated in IS-treated HK-2 cells (Fig. 4b). Moreover, an evident increase in the protein expression of DNMT1, 3a, 3b was also observed after IS treatment (Fig. 4c).
Subsequently, CpG island prediction software analysis found that the typical CpG islands in the transcription start region of the sFRP5 gene (Fig. 4d). Bisulfite-sequencing PCR (BSP) was performed to further confirm the MSP results. Amplified fragments were cloned and sequenced for each amplification product from individual group. As shown in Fig. 4e, the detected CpG islands located in the promoter region of sFRP5 contains 24 CpG dinucleotides. The frequency of methylated CpG dinucleotides in this region in IS-treated HK-2 cells was 40.3 ± 7.3%, which was much higher than that in the control group (6.2 ± 5.7%), further confirming that IS can induce sFRP5 DNA hypermethylation in HK-2 cells.
sFRP5 DNA hypermethylation contributes to the activation of Wnt/β-catenin signaling in IS-treated HK-2 cells
To confirm whether sFRP5 DNA hypermethylation is involved in the IS-induced activation of Wnt/β-catenin signaling, HK-2 cells were pretreated with the DNMTs inhibitor 5Aza-2dc before incubation with IS (50 mg/L). We first found that the IS-induced increase of DNMT1 expression and sFRP5 gene hypermethylation in HK-2 cells were significantly inhibited by 5Aza-2dc in a dose-dependent manner (Fig. 5a, b). Then, we found that the IS-induced downregulation of sFRP5 and upregulation of β-catenin were also markedly suppressed by 5Aza-2dc (Fig. 5c, d). Furthermore, an immunoprecipitation assay revealed that incubation with IS significantly reduced the binding of sFRP5 to Wnt5a in HK-2 cells and that this inhibitory effect of IS could be reversed by 5Aza-2dc (Fig. 5e). Therefore, IS-induced sFRP5 DNA hypermethylation possibly contributes to the activation of Wnt/β-catenin signaling in renal tubular cells.
ROS/ERK1/2 signaling activation is involved in IS-induced sFRP5 hypermethylation
We next investigated the role of oxidative stress and its downstream signaling in IS-induced sFRP5 DNA hypermethylation as previous studies have shown that oxidative stress is an important risk factor for DNA hypermethylation and IS can induce oxidative stress. As shown in Fig. 6a, b, IS significantly promoted ROS production in HK-2 cells in a dose- and time-dependent manner, and this increase was accompanied by an increase in the phosphorylation of p44/42 MAPK (ERK1/2). By contrast, pretreatment with NAC (a ROS scavenger) and the ERK1/2 inhibitor U0126 markedly suppressed the phosphorylation of ERK1/2 and the DNA hypermethylation of sFRP5 (Fig. 6c, d). Meanwhile, the IS-induced increase in DNMT1 expression and downregulation of sFRP5 were also significantly inhibited by NAC and U0126 pretreatments (Fig. 6e). These results suggest that ROS/ERK1/2 signaling activation is involved in IS-induced sFRP5 hypermethylation.
Blocking DNA methylation and supplementation with recombinant sFRP5 protein both ameliorate renal fibrosis by inhibiting Wnt/β-catenin activation in IS-injected CKD mice
In uninephrectomized mice, intraperitoneal injections of IS (100 mg/kg/day for 4 weeks) significantly increased the DNA methylation status of the sFRP5 gene in the remaining kidney, whereas treatment with 5Aza-2dc (0.35 mg/kg/48 h, intraperitoneal injection) substantially decreased the DNA methylation of sFRP5 induced by IS, as assayed by MSP (Fig. 7a, b). Moreover, western blotting showed that treatment with 5Aza-2dc appeared to reverse the reduction in sFRP5 expression in the kidneys of IS-injected mice (Fig. 7c), demonstrating that the capacity for IS to downregulate sFRP5 expression is mainly due to its ability to induce DNA hypermethylation.
Finally, we evaluated the treatment effects of 5Aza-2dc and recombinant sFRP5 protein (0.01 or 0.02 mg/kg/48 h) on renal fibrosis in IS-injected CKD mice. As shown in Fig. 8a, b, both the 5Aza-2dc and sFRP5 treatments significantly ameliorated renal fibrosis in IS-injected mice, as assessed by Masson’s trichrome staining, Sirius red staining, and α-SMA-positive staining. Notably, the expression of both β-catenin and active-β-catenin in the kidney was also significantly reduced after the 5Aza-2dc and sFRP5 treatments (Fig. 8a–d). These data demonstrate that exogenous supplementation with the sFRP5 protein or the upregulation of sFRP5 expression by blocking DNA hypermethylation can attenuate renal fibrosis via the suppression of Wnt/β-catenin activation. In addition, we examined the expression of klotho, which can be epigenetically regulated by IS. We found that both the 5Aza-2dc and sFRP5 treatments significantly increased klotho expression in IS-injected mice when compared with the mice treated with IS alone (Fig. 8a).
Discussion
Tubulointerstitial fibrosis and uremic toxin accumulation are two hallmarks of chronic renal failure, and the relationship between these two pathological features in CKD needs to be clarified. In the present study, we not only addressed the role of protein-bound uremic toxin accumulation inducing renal fibrosis but also revealed that IS-induced sFRP5 DNA hypermethylation is an important contributor to the activation of the Wnt/β-catenin signaling that plays a key role in renal fibrosis, thereby providing novel insight into the mechanisms underlying the effect of protein-bound uremic toxins on the progression of renal fibrosis in CKD patients. As the progression of renal fibrosis may aggravate renal dysfunction, which in turn promotes uremic toxin accumulation, our findings provide a deeper understanding of the progressive renal lesion in CKD patients.
IS, a typical protein-bound toxin that accumulates in the serum of CKD patients, is difficult to remove from the blood by conventional dialysis [24]. In recent years, the role of IS in the development of CKD and its associated pathological complications has attracted increasing attention due to its distinctive physicochemical properties and toxic effects. Here, we first show that the progression of renal fibrosis is positively related to serum IS levels in patients with CKD based on an analysis of clinical data. Furthermore, we confirmed that renal fibrosis can be induced in uninephrectomized mice via IS injections, which is consistent with previous reports [23, 25]. These findings provide new and compelling evidence that IS accumulation is an important risk factor for the development of renal fibrosis in CKD patients.
Wnt/β-catenin signaling is an important cellular signal transduction pathway and is involved in various physical and pathological processes [26]. It has been reported that the activation of Wnt/β-catenin signaling plays a key role in progressive interstitial fibrosis in a model of unilateral ureteral obstruction (UUO) [27, 28], and the inhibition of Wnt/β-catenin signaling is conducive to the attenuation of renal fibrosis [27, 29]. Mechanistic studies have revealed that the activation of Wnt/β-catenin signaling results in collagen deposition and renal fibrosis progression through the upregulation of MMP-7 expression, activation of the RAAS system and increases in the expression of Snail, along with other processes [27, 30, 31]. In our study, the results of both the in vivo and in vitro investigations demonstrate for the first time that Wnt/β-catenin signaling is involved in IS-induced renal fibrosis.
It is well known that sFRPs are extracellular Wnt antagonists that negatively regulate the activation of Wnt/β-catenin signaling by binding directly with Wnt ligands [32]. There are five members (sFRP1–5) of the sFRP family [18]. It has been reported that the downregulation of sFRPs contributes to the development of tumors via the activation of Wnt/β-catenin signaling [33,34,35]. The role of sFRPs in the inhibition of Wnt signaling in renal fibrosis is very interesting. In UUO mice, Wnt/β-catenin signaling has been shown to be activated after surgery, whereas intraperitoneal injections of recombinant sFRP4 protein significantly alleviate the progression of renal fibrosis via downregulation of β-catenin expression in tubular epithelial tissue [17]. Furthermore, sFRP1 knockout mice show a significant increase in the expression of myofibroblast markers, followed by the activation of the noncanonical Wnt/PCP signaling pathway, in renal tubular epithelial cells after UUO [36]. These findings indicate that sFRPs are intrinsic inhibitors of renal fibrosis that act by restraining Wnt signaling. However, the effects of IS on the regulation of sFRPs and its role in IS-induced renal fibrosis are unclear. Here, we showed that sFRP4 and sFRP5 were strongly expressed in human renal tubular HK-2 cells and that only sFRP5 expression was significantly inhibited by IS. Moreover, sFRP5 expression was significantly downregulated in renal tubular epithelial cells in uninephrectomized mice after intraperitoneal injection with IS, which was followed by the increased expression of β-catenin, suggesting that IS has the potential to activate Wnt/β-catenin signaling via the suppression of sFRP5 expression. It is worth noting that our findings are different than those reported by Surendran et al., who showed that the expression of sFRP4 but not sFRP5 decreased in the kidneys after UUO surgery [17]. We think that this discrepancy may be due to the different responses of these two genes to different stimuli.
As previously reported, DNA methylation is the predominant reason for the downregulation of sFRPs and the consequent activation of Wnt/β-catenin signaling. For instance, sFRP1 silencing due to aberrant DNA hypermethylation activates the Wnt/β-catenin pathway and contributes to increases in cell growth and proliferation in hepatocellular carcinoma [37]. A previous study showed that sFRP2 was methylated in 70% of prostate cancer specimens and that sFRP5 was methylated in 60% of cells from two different prostate cancer cell lines, which might be the main reason for the aberrant activation of Wnts in prostate cancer cells [38]. Interestingly, IS has been confirmed to be capable of inducing the hypermethylation of the klotho gene, which is mainly expressed in renal tubular cells and plays a protective role in the kidneys [23]. In this study, we found that IS has the potential to increase the expression of DNMTs, and the decreased expression of sFRP5 was possibly due to its DNA hypermethylation in renal tubular cells after IS treatment. It has been shown that sFRP5 is the specific antagonist of Wnt5a [39, 40]. Our further investigation demonstrated that IS significantly inhibited the binding of sFRP5 to Wnt5a, which might have contributed to the increased β-catenin expression. On the other hand, treatment with 5-Aza-2dc, an inhibitor of DNMTs, substantially reduced the IS-induced DNA hypermethylation and downregulation of sFRP5 in renal tubular cells. Moreover, intraperitoneal injections of both 5-Aza-2dc and recombinant sFRP5 protein significantly alleviated the IS-induced activation of Wnt/β-catenin and renal fibrosis. A previous study has shown that klotho DNA hypermethylation induced by indoxyl sulfate also caused renal fibrosis through downregulation of the expression of klotho [23]. Additionally, Zhou et al. reported that klotho is an endogenous Wnt antagonist; loss of klotho promotes kidney injury by derepression of Wnt/β-catenin signaling [29]. In the present study, we also observe the decreased expression of klotho in kidneys of IS-injected mice and IS-treated HK-2 cells, and further confirm that IS could activate Wnt/β-catenin signaling and promote renal fibrosis through the induction of sFRP5 DNA hypermethylation. Therefore, we deduce that both klotho and sFRP5 DNA hypermethylation play a key role in IS-induced the activation of Wnt signaling and renal fibrosis.
Previous studies have shown that oxidative stress is a major cause of the aberrant DNA methylation of target genes [41,42,43], and serum IS levels have been shown to be associated with increased oxidative stress in CKD patients [44]. Therefore, we further investigated the mechanism underlying the effect of IS on sFRP5 DNA hypermethylation and found that the IS-induced hypermethylation of sFRP5 was inhibited by a ROS scavenger and an ERK1/2 inhibitor, indicating that oxidative stress-mediated ERK1/2 signaling is involved in the IS-induced DNA hypermethylation of sFRP5. These findings also provide a deeper understanding of the pathological role of oxidative stress in the progression of renal fibrosis.
In conclusion, we not only addressed the role of protein-bound uremic toxins accumulation in inducing renal fibrosis but also revealed that IS-induced sFRP5 DNA hypermethylation is an important contributor to the activation of the Wnt/β-catenin signaling that plays a key role in renal fibrosis, thereby providing novel insight into the mechanisms underlying the effect of protein-bound uremic toxins on the progression of renal fibrosis in CKD. As the progression of renal fibrosis may aggravate the renal dysfunction, which in turn promotes uremic toxins accumulation, our findings also provide a deeper understanding of the progressive renal lesion in CKD.
Materials and methods
Selection of patients
Thirty-four patients (aged 22–78 years) with primary chronic renal diseases were recruited from the Department of Nephrology of Xinqiao Hospital (Chongqing, China). The following exclusion criteria were applied: polycystic kidney disease, pregnancy, human immunodeficiency virus, renal cancer, and recent immunosuppressive therapy. Kidney biopsies and serum samples were obtained from these patients for subsequent Masson’s trichrome staining and IS measurements. The study protocol was approved by the Ethics Committee of Xinqiao Hospital and carried out in accordance with the Declaration of Helsinki.
Mice
Six-week-old male CD-1 mice were purchased from Beijing Vital River Laboratory Animal Technology Co., Ltd. (Beijing, China) and randomized into different groups: (1) sham group (mice underwent kidney-exposure operations only), (2) CKD group (½ nephrectomy: right kidney was removed and intraperitoneal injections of 0.01 mol/L PBS were administered), (3) IS group (CKD+IS, mean that CKD mice injected with 100 mg/kg/day IS (Sigma-Aldrich, USA)), (4) IS+5-Aza-2dc group (CKD+IS+5-Aza-2dc, mean that IS-injected CKD mice received simultaneous intraperitoneal injections of 0.35 mg/kg/48 h 5-Aza-2dc (Sigma-Aldrich, USA) for 4 weeks), (5) IS+0.01 sFRP5 group (CKD+IS+sFRP5 at 0.01 mg/kg/48 h, mean that IS-injected CKD mice received recombinant mouse sFRP5 protein (R&D Systems, Minneapolis, USA) at a dosage of 0.01 mg/kg/48 h for 4 weeks), and (6) IS+0.02 sFRP5 group (CKD+IS+sFRP5 at 0.02 mg/kg/48 h for 4 weeks). Mice were euthanized after injection for 4 weeks, and kidney and blood samples were collected for further analysis. All animal studies were approved by the Institutional Animal Care and Use Committee of Third Military Medical University and were carried out in accordance with the institutional animal care guidelines established by the Third Military Medical University.
IS measurement
The IS serum levels of mice were detected by high-performance liquid chromatography (HPLC) as described previously [25].
Masson’s trichrome staining
The paraffin sections of the kidneys were stained with Masson’s trichrome, and the quantification of the fibrotic area was carried out using Image Pro-Plus 6.0 software (Bethesda, MD) as described previously [25].
Sirius red staining
The paraffin sections of the kidneys were stained with Sirius red staining and picro-sirius red for light microscope examination which was described before [45, 46]. Briefly, kidney tissues were embedded in paraffin after being fixed in 10% formalin for 24 h. Three-micrometer paraffin sections were mounted on glass slides, then stained for 30 min with Sirius red (0.1% of Sirius red in saturated aqueous picric acid) [45]. Sections were then observed under polarized light microscopy (Olympus BX63, Tokyo, Japan). Under polarized light, the larger collagen fibers (type I) are bright yellow or orange [46].
Immunohistochemistry
Kidney tissues were embedded in paraffin after being fixed in 10% formalin for 24 h. Immunohistochemical staining was performed using standard methods. The following primary antibodies were used: rabbit polyclonal anti-sFRP5 (Abcam, Cambridge, UK), rabbit polyclonal anti-β-catenin (Cell Signaling Technology, Beverly, MA, USA), rabbit monoclonal anti-klotho (Abcam, Cambridge, UK) and rabbit monoclonal anti-α-SMA (Millipore, Merck KGaA, Germany). After incubation with primary antibodies at 4 °C overnight, the slides were then incubated with enzyme-conjugated secondary antibodies and developed with 3,3′-diaminobenzidine (DAB). Slides were observed with an inverted microscope (Olympus BX63, Tokyo, Japan). The negative controls were performed using PBS to replace the primary antibody. Images were gathered from randomly selected microscopic fields.
Cell culture
The human renal proximal tubule epithelial cells (HK-2) were purchased from the American Type Culture Collection (ATCC; Manassas, VA, USA), and the cells were cultured in a DMEM/high glucose medium supplemented with 10% fetal bovine serum (Gibco Invitrogen, Carlsbad, CA, USA) and 1% penicillin/streptomycin at 37 °C in a 5% CO2 humidified incubator.
Methylation-specific PCR and BSP
Genomic DNA was extracted using a Quick-gDNA MiniPrep kit (Zymo Research, Irvine, CA) and modified with a bisulfate treatment according to the manufacturer’s instructions for the EZ DNA Methylation Gold Kit (Zymo Research, Irvine, CA). The gene promoter-specific primers that recognize the methylated and unmethylated CpG sites for the sFRP5 and BSP primers were designed by MethPrimer software (http://www.urogene.org/cgi-bin/methprimer/methprimer.cgi) and listed in Supplement Table S1. The PCR products of genomic DNA without bisulfate treatment were used as control for the MSP. The T100™ PCR amplification system (Bio-Rad, Hercules, CA) was used for the MSP and BSP extensions. PCR products for MSP were visualized by gold-view staining in 3% agarose gels, and the densitometric intensity corresponding to each band was quantified by Quantity One software (Bio-Rad). Each reaction was performed in triplicate. For the quantitative methylation analysis, BSP was carried out by subcloning the PCR products into pGEM-T Easy Vectors (Promega, Madison, USA), which were then transformed into Escherichia coli DH5α. More than ten candidate plasmid clones were selected for sequencing (Beijing Genome Institute, Beijing, China).
RT-PCR
Total RNA of cells and tissues was extracted with RNAiso Plus according to the manufacturer’s protocol, and samples were quantified using a NanoDrop spectrophotometer. Reverse transcription was carried out using a Reverse Transcription Kit (TaKaRa Bio; Otsu, Shiga Prefecture, Japan). The PCR reaction was performed in a programmable thermal cycler. The primers used in the experiments are presented in supplementary Table S2.
Western blotting
The protein samples isolated from HK-2 cells and kidney tissue were used to perform western blotting as described previously [47]. The following primary antibodies were used: rabbit monoclonal anti-α-SMA (42 kD, 1:1000, Millipore, Merck KGaA, Germany), rabbit monoclonal anti-β-catenin (92 kD, 1:3000, Abcam, Cambridge, UK), rabbit monoclonal anti-active-β-catenin (92 kD, 1:1000, Millipore, Merck KGaA, Germany), rabbit monoclonal anti-klotho (116 kD, 1:1000, Abcam, Cambridge, UK), rabbit polyclonal anti-sFRP5 (36 kD, 1:1000, Abcam, Cambridge, UK), rabbit monoclonal anti-phospho-ERK1/2, rabbit polyclonal anti-ERK1/2 (42, 44 kD, 1:1000, Cell Signaling Technology, Beverly, MA, USA), rabbit monoclonal anti-DNMT1 (200 kD, 1:1000, Cell Signaling Technology, Beverly, MA, USA), rabbit polyclonal anti-DNMT3a (100–130 kD, 1:1000, Santa Cruz Biotechnology, Santa Cruz, CA), rabbit polyclonal anti-DNMT3b (75–100 kD, 1:1000, Santa Cruz Biotechnology, Santa Cruz, CA), and mouse monoclonal anti-β-actin (42 kD, Santa Cruz Biotechnology, Dallas, TX, USA).
Immunoprecipitation
HK-2 cells were incubated with 50 mg/L IS in the presence or absence of 10 μmol/L 5-Aza-2dc for 72 h at 37 °C. Immunoprecipitation was performed using a Pierce Classic IP kit (Thermo Scientific, Rockford, IL, USA) according to the manufacturer’s instructions. Briefly, cell lysates were incubated with 4 μL of rabbit polyclonal anti-Wnt5a (Millipore, Merck KGaA, Germany) or 4 μL of rabbit anti-IgG (Santa Cruz Biotechnology, Santa Cruz, CA) at 4 °C overnight. Then, the precipitated complexes were captured by 20 μL of Protein A/G agarose, followed by western blotting with rabbit polyclonal anti-sFRP5 and rabbit polyclonal Wnt5a, respectively.
ROS measurement
Intracellular ROS levels were measured using the dichlorodihydrofluorescein diacetate (DCFH-DA) assay. The cells were incubated in 96-well plates for 24 h and then incubated with 50 mg/L IS for different times (15, 30, 60, and 180 min), or they were incubated with different concentrations of IS (2, 10, and 50 mg/L) for 3 h. Subsequently, cells were loaded in the dark for 30 min with DMEM containing 10 μmol/L DCFH-DA at 37 °C. After washing twice with sterile PBS, the cells were observed under a fluorescence microscope (Olympus IMT-2, Tokyo, Japan). To quantify ROS production, the relative intensity of DCF fluorescence was detected using a fluorometric imaging plate reader (Thermo Fisher Scientific, Pittsburgh, PA, USA) at excitation and emission wavelengths of 488 and 520 nm, respectively.
Statistical analysis
BSP sequence data were analyzed using software from BiQ Analyzer. The data from other experiments are presented as the means ± SEM. Statistical analyses were performed using SPSS 19.0 (SPSS Japan, Tokyo, Japan) and GraphPad Prism 6 (GraphPad Software Inc., San Diego, CA). Tukey’s post hoc analyses were used to determine significant differences among three or more groups. The criteria for significance were defined as p < 0.05.
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Acknowledgments
This study was supported by research grants from the National Natural Science Foundation of China (Nos. 81500567, 81500544, 81270290, and 81400747) and the project for Chongqing basic science and advanced technology research (cstc2015jcyjBX0028).
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The study protocol was approved by the Ethics Committee of Xinqiao Hospital and carried out in accordance with the Declaration of Helsinki.
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Yu, Y., Guan, X., Nie, L. et al. DNA hypermethylation of sFRP5 contributes to indoxyl sulfate-induced renal fibrosis. J Mol Med 95, 601–613 (2017). https://doi.org/10.1007/s00109-017-1538-0
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DOI: https://doi.org/10.1007/s00109-017-1538-0