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Evolution and distribution of the carbonic anhydrase gene families

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The Carbonic Anhydrases

Part of the book series: EXS 90 ((EXS,volume 90))

Abstract

The reversible hydration of carbon dioxide occurs spontaneously, but when carbonic anhydrase (CA) is present the turnover number can exceed a million molecules per second. It is only in the recent past that it has become apparent just how widely the CAs are distributed in living organisms; nevertheless, eubacteria do exist, e.g. the minimal anaerobe, Mycoplasma genitalium (Fraser et al., 1995), that appear to lack a CA-encoding gene. It is also clear that three evolutionarily unrelated families of genes (α-CA, β-CA and γ-CA) encode the CAs.

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References

  • Aiba H, Baba T, Fujita K, Hayashi K, Inada T, Isono K, Itoh T, Kasai H, Kashimoto K, Kimura S et al (1996) A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0–40.1 min region in the linkage map. DNA Res 3: 363–377

    PubMed  CAS  Google Scholar 

  • Alber B, Ferry JG (1994) A carbonic anhydrase from the archaeon Methanosarcina thermophila. Proc Natl Acad Sci USA 91: 6909–6913

    PubMed  CAS  Google Scholar 

  • Aldred P, Fu P, Barrett G, Penschow JD, Wright RD, Coghlan JP, Fernley RT (1991) Human secreted carbonic anhydrase: cDNA cloning, nucleotide sequence, and hybridization histochemistry. Biochemistry 30: 569–575

    PubMed  CAS  Google Scholar 

  • Altschul SF, Boguski MS; Gish W, Wootton JC (1994) Issues in searching molecular sequence databases. Nature Gen 6: 119–129

    CAS  Google Scholar 

  • Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res 25: 3389–3402

    PubMed  CAS  Google Scholar 

  • Amor-Guerret M, Levi-Strauss M (1990) Nucleotide and derived amino acid sequence of a cDNA encoding a new mouse carbonic anhydrase. Nucl Acids Res 18: 1646

    Google Scholar 

  • Barlow JH, Lowe N, Edwards YH, Butterworth PHW (1987) Human carbonic anhydrase I cDNA. Nucl Acids Res 15: 2386

    PubMed  CAS  Google Scholar 

  • Barnea G, Silvennoinen O, Shaanan B, Honeggar AM, Canoll P, D’Eustachio P, Morse B, Levy JB, LaForgia S, Huebner K et al (1993) Identification of a carbonic anhydrase-like domain in the extracellular region of (CA)-RPTPγ defines a new subfamily of receptor tyrosine phosphatases. Mol Cell Biol 13: 1497–1506

    PubMed  CAS  Google Scholar 

  • Beach MB, Osuna R (1998) Identification and characterization of the fis operon in enteric bacteria. J Bacteriol 180: 5932–5946

    PubMed  CAS  Google Scholar 

  • Beaman TW, Binder DA, Blanchard JS, Roderick SL (1998a) Three-dimensional structure of tetrahydrodipicolinate N-succinyltransferase. Biochemistry 36: 489–494

    Google Scholar 

  • Beaman TW, Blanchard JS, Roderick SL (1998b) The conformational change and active site structure of tetrahydrodipicolinate N-succinyl-transferase. Biochemistry 37: 10363–10369

    CAS  Google Scholar 

  • Beaman TW, Sugantino M, Roderick SL (1998c) Structure of the hexapeptide xenobiotic acetyltransferase from Pseudomonas aeruginosa. Biochemistry 376: 6689–6696

    Google Scholar 

  • Bergenhem N, Carlsson U (1990) Partial amino acid sequence of erythrocyte carboic anhydrase from tiger shark. Comp Bichem Physiol 95B: 205–213

    CAS  Google Scholar 

  • Boguski MS, Schuler GD (1995) ESTablishing a human transcript map. Nature Gen 10: 369–371

    CAS  Google Scholar 

  • Bracey MH, Bartlett SG (1995) Sequence of a cDNA encoding carbonic anhydrase from barley. Plant Physiol 108: 433–434

    PubMed  CAS  Google Scholar 

  • Bult CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, Sutton GG, Blake JA, Fitzgerald LM, Clayton RA, Gocayne JD et al (1996) Complete genome sequence of the methanogenic archaeon. Methanococcus jannaschii. Science 273: 1058–1073

    CAS  Google Scholar 

  • Burnell JN, Gibbs MJ, Mason JG (1989) Spinach chloroplastic carbonic anhydrase. Nucleotide sequence analysis of cDNA. Plant Physiol 92: 37–40

    Google Scholar 

  • Cavallaro A, Ludwig M, Burnell J (1994) The nucleotide sequence of a complimentary DNA encoding Flaveria bidentis carbonic anhydrase. FEBS Lett 350: 216–218

    PubMed  CAS  Google Scholar 

  • Chegwidden WR, Tashian RE, Wiebauer K (1995) CA IB: A second gene for human carbonic anhydrase I. Isozyme Bull 28: 30

    Google Scholar 

  • Chirica LC, Elleby B, Jonsson BH, Lindskog S (1997) The complete sequence, expression in Escherichia coli,purification and some properties of carbonic anhydrase from Neisseria gonorrrhoeae. Eur J Biochem 244: 755–760

    PubMed  CAS  Google Scholar 

  • Cleves AE, Cooper DN, Barondes SH, Kelly RB (1996) A new pathway for protein export in Saccharomyces cerevisiae. J Cell Biol 133: 1017–1026

    PubMed  CAS  Google Scholar 

  • Coba de la Pena T, Frugier F, McKhann HI, Bauer P, Brown S, Kondorosi A, Crespi M (1997) A carbonic anhydrase gene is induced in the nodule primordium and its cell-specific expression is controlled by the presence of Rhizobium during development. Plant J 11: 407–420

    Google Scholar 

  • Cole ST, Brosch R, Parkhill J, Gamier T, Churcher C, Harris D, Gordon SV, Eiglmeier K, Gas S, Barry CE et al (1998) Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393: 537–544

    PubMed  CAS  Google Scholar 

  • Coleman J, Raetz CR (1988) First committed step of lipid A biosynthesis in Escherichia coli sequence of the 1pxA gene. J Bacteriol 170: 1268–1274

    PubMed  CAS  Google Scholar 

  • Conlan RS, Griffiths L-A, Napier JA, Shewry PR, Mantell S, Ainsworth CA (1995) Isolation and characterization of cDNA clones representing the genes encoding the major tuber storage protein (dioscorin) of yam (Dioscores cayensis Lam.). Plant Mol Biol 28: 369–380

    PubMed  CAS  Google Scholar 

  • Curtis PJ, Withers E, Demuth D, Watt R, Venta PJ, Tashian RE (1983) The nucleotide sequence and derived amino acid sequence of cDNA coding for mouse carbonic anhydrase I. Gene 25: 325–332

    PubMed  CAS  Google Scholar 

  • Deckert G, Warren PV, Gaasterland T, Young WG, Lenox AL, Graham DE, Overbeek R, Snead MA, Keller M, Aujay M (1998) The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature 392: 353–358

    PubMed  CAS  Google Scholar 

  • Earnhardt JN, Qian M, Tu C, Lakkis MM, Bergenhen NCH, Lapis PJ, Tashain RE, Silverman DN (1998) The catalytic properties of murine carbonic anhydrase VII. Biochemistry 37: 10837–10845

    PubMed  CAS  Google Scholar 

  • Eichler K, Bourgis F, Buchet A, Kleber HP, Mandrand-Berthelot MA (1994) Molecular characterization of the cai operon necessary for carnitine metabolism in Escherichia coli. Mol Microbiol 13: 775–786

    PubMed  CAS  Google Scholar 

  • Epperly BR, Bergenhem NCH, Venta PJ, Tashian RE (1993) Characterization of the genes encoding carbonic anhydrase I of chimpanzee and gorilla: Comparative analysis of 5’ flanking erythroid-specific promotor sequences. Gene 131: 249–253

    PubMed  CAS  Google Scholar 

  • Eriksson AE, Liljas A (1991) X-ray crystallographic studies of carbonic anhydrase isozymes I, II, and III. In: SJ Dodgson, RE Tashian, G Gros, ND Carter (eds): The Carbonic Anhydrases: Cellular Physiology and Molecular Genetics, Plenum Press, New York, 33–48

    Google Scholar 

  • Eriksson M, Karlsson J, Ramazanov Z, Gardestrom P, Samuelsson G (1996) Discovery of an algal mitochondrial carbonic anhydrase: Molecular cloning and characterization of a lowCO2-induced polypeptide in Chlamydomonas reinhardtii. Proc Nail Acad Sci USA 93: 12031–12034

    CAS  Google Scholar 

  • Fawcett TW, Browse JA, Volokita M, Bartlett SG (1990) Spinach carbonic anhydrase primary structure deduced from the sequence of a cDNA clone. J Biol Chem 265: 5415–5417

    Google Scholar 

  • Fernley RT, Wright RD, Coghlan JP (1988) Complete amino acid sequence of ovine salivary carbonic anhydrase. Biochemistry 27: 2815–2820

    PubMed  CAS  Google Scholar 

  • Fett JP, Coleman JR (1994) Characterization and expression of two cDNAs encoding carbonic anhydrase in Arabidopsis thaliana. Plant Physiol. 105: 707–713

    PubMed  CAS  Google Scholar 

  • Fisher M, Gokhman I, Pick U, Zamir A (1996) A salt-resistant plasma membrane carbonic anhydrase is induced by salt in Dunaliella salina. J Biol Chem 271: 17718–17723

    PubMed  CAS  Google Scholar 

  • Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kervelage AR, Bult CJ, Tomb J-F, Dougherty BA, Merrick JM et al (1995) Whole-genome random sequencing and assembly of Haemophilus influenza Rd. Science 269: 496–512

    PubMed  CAS  Google Scholar 

  • Fleming RE, Crouch EC, Ruzicka CA, Sly WS (1993) Pulmonary carbonic anhydrase IV: Developmental regulation and cell-specific expression in the capillary endothelium. Am J Physiol 265: L627–635

    PubMed  CAS  Google Scholar 

  • Fraser CM, Gocayne JD, White O, Adams MD, Clayton RA, Fleischmann RD, Bult CJ, Kerlavage AR, Sutton GG, Kelley JM et al (1995) The minimal gene complement of Mycoplasma genitalium. Science 270: 397–403

    PubMed  CAS  Google Scholar 

  • Fraser CM, Casjens S, Huang WM, Sutton GG, Clayton RA, Lathigra R, White O, Ketchum KA, Dodson R, Hickey EK et al (1997) Genomic sequence of a Lyme disease spirochete, Borrelia burgdorferi. Nature 390: 580–586

    CAS  Google Scholar 

  • Fraser P, Cummings P, Curtis P (1989) The mouse carbonic anhydrase I gene contains two tissue-specific promotors. Mol Cell Biol 9: 3308–3313

    PubMed  CAS  Google Scholar 

  • Fraser PJ, Curtis PJ (1986) Molecular evolution of the carbonic anhydrase genes: Calculation of the divergence time for mouse carbonic anhydrase I and II. J Mol Evol 23: 294–299

    PubMed  CAS  Google Scholar 

  • Fujita N, Mori H, Yura T, Ishihama A (1994) Systematic sequencing of the Escherichia coli genome: Analysis of the 2.4–4.1 min (110,917–193,643 bp) region. Nucl Acids Res 22: 1637–1639

    PubMed  CAS  Google Scholar 

  • Fukuzawa H, Fujiwara S, Yamamoto Y, Dionisio-Sese ML, Miyachi S (1990a) cDNA cloning, sequence, and expression of carbonic anhydrase in Chlamydomonas reinhardtii: Regulation by environmental CO2 concentration. Proc Natl Acad Sci USA 87: 4383–4387

    CAS  Google Scholar 

  • Fukuzawa H, Fujiwara S, Tachiki A, Miyachi S (1990b) Nucleotide sequence of two genes CAHI and CAH2 which encode carbonic anhydrase polypeptides in Chlamydomonas reinhardtii. Nucl Acids Res 18: 6441–6442

    CAS  Google Scholar 

  • Fukuzawa H, Suzuki E, Komukai Y, Miyachi S (1992) A gene homologous to chloroplast carbonic anhydrase (icfA) is essential to photosynthetic carbon dioxide fixation by Synechococcus PCC7942. Proc Natl Acad Sci USA 89: 4437–4441

    PubMed  CAS  Google Scholar 

  • Funke RP, Kovar JL, Weeks DP (1997) Intracellular carbonic anhydrase is essential to phptpsynthesis in Chlamydomonas reinhardtii at atmospheric levels of CO2. Demonstration via genomic complementation of the high-CO2-requiring mutant ca-1. Plant Physiol 114: 237–244

    PubMed  CAS  Google Scholar 

  • Goebel SJ, Johnson GP, Perkus ME, Davis SW, Winslow JP, Paoletti E (1990) The complete DNA sequence of Vaccinia virus. Virology 179: 247–266

    PubMed  CAS  Google Scholar 

  • Grimes A, Paynter J, Walker ID, Bhave M, Mercer JF (1997) Decreased carbonic anhydrase III levels in the liver of the mouse mutant ‘toxic milk’ (tx) due to copper accumulation. Biochem J 321: 341–346

    CAS  Google Scholar 

  • Guilloton Mb, Korte JJ, Lamblin AE Fuchs JA, Anderson PM (1992) Carbonic anhydrase in Escherichia coli. A product of the cyn operon. J Biol Chem 267: 3731–3734

    PubMed  CAS  Google Scholar 

  • Guilloton MB, Lamblin AF, Kozliak EI, Gerami-Nejad M, Tu CK, Silverman DN, Anderson PM, Fuchs JA (1993) A physiological role for cyanate-induced carbonic anhydrase in Escherichia coli. J Bacteriol 175: 1443–1451

    PubMed  CAS  Google Scholar 

  • Hewett-Emmett D, Hopkins PJ, Tashian RE, Czelusniak J (1984) Origins and molecular evolution of the carbonic anhydrase isozymes. Ann NY Acad Sci 429: 338–358

    PubMed  CAS  Google Scholar 

  • Hewett-Emmett D, Tashian RE (1991) Structure and evolutionary origins of the carbonic anhydrase multigene family. In: SJ Dodgson, RE Tashian, G Gros, ND Carter (eds): The carbonic anhydrases: cellular physiology and molecular genetics,Plenum Press, New York, 15–32

    Google Scholar 

  • Hewett-Emmett D, Tashian RE (1996) Functional diversity, conservation, and convergence in the evolution of the α-, β- and γ-carbonic anhydrase gene families. Mol Phyl Evol 5: 50–77

    CAS  Google Scholar 

  • Hewett-Emmett D, Welty RJ, Tashian RE (1983) A widespread silent polymorphism of human carbonic anhydrase III: Implications for evolutionary genetics. Genetics 105: 409–420

    PubMed  CAS  Google Scholar 

  • Hewett-Emmett D, Cook RG, Dodgson SJ (1986) Novel gene encodes mitochondria] carbonic anhydrase (CA V) that lacks the active-site tyrosine of the amino-terminal region of CA I, II, and III. Fed Proc 45: 1661

    Google Scholar 

  • Hiltonen T, Bjorkbacka H, Forsman C, Clarke AK, Samuelsson G (1998) Intracellular β-carbonic anhydrase of the unicellular green alga Coccomyxa. Cloning of the eDNA and characterization of the functional enzyme overexpressed in Escherichia coli. Plant Physiol 117: 1341–1349

    PubMed  CAS  Google Scholar 

  • Hopkins PJ, Bergenhem NCH, Venta PJ, Hewett-Emmett D, Tashian RE (1995) Characterization of the gene encoding carbonic anhydrase I from the pigtail macaque. Gene 152: 265–269

    PubMed  CAS  Google Scholar 

  • Huang S, Xue Y, Sauer-Eriksson E, Chirica L, Lindskog S, Jonsson BH (1998) Crystal structure of carbonic anhydrase from Neisseria gonorrhoeae and its complex with the inhibitor acetazolamide. J Mol Biol 283: 301–310

    PubMed  CAS  Google Scholar 

  • Ivanov SY, Kuzmin I, Wei M-H, Pack S, Geil L, Johnson BE, Stanbridge EJ, Lerman MI (1998) Down-regulation of transmembrane carbonic anhydrases in renal cell carcinoma cell lines by wild-type von Hippel-Lindau transgenes. Proc Natl Acad Sci USA 95: 12596–12601

    PubMed  CAS  Google Scholar 

  • Jiang W, Woitach JT, Gupta D (1996) Sequence of bovine carbonic anhydrase VI: Potential recognition sites for N-acetylgalactosaminyltransferase. Biochem J 318: 291–296

    PubMed  CAS  Google Scholar 

  • Johanssan I-M (1994) Pea carbonic anhydrase, a kinetic study. Ph.D. thesis, Umea University, Sweden

    Google Scholar 

  • Kaneko T, Sato S, Kotani H, Tanaka A, Asamizu E, Nakamura Y, Miyajima N, Hirosawa M, Sugiura M, Sasamoto S et al (1996) Sequence analysis of the enome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res 3: 109–136

    PubMed  CAS  Google Scholar 

  • Kaneko T, Tanaka A, Sato S, Kotani H, Sazuka T, Miyajima N, Hirosawa M, Sugiura M, Tabata S (1995) Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome. DNA Res 2: 153–166

    PubMed  CAS  Google Scholar 

  • Karlsson J, Clarke AK, Chen ZY, Hugghins SY, Park YI, Husic HD, Moroney JV, Samuelsson G (1998) A novel alpha-type carbonic ahydrase associated with the thylakoid membrane in Chlamydomonas reinhardtii is required for growth at ambient CO2. EMBO J 17: 1208–1216

    PubMed  CAS  Google Scholar 

  • Kastury K, Ohta M, Lasota J, Moir D, Dorman T, LaForgia S, Druck T, Huebner K (1996) Structure of the human receptor tyrosine phosphatase gamma gene (PTPRG) and relation to the familial RCC t(3;8) chromosome translocation. Genomics 32: 225–235

    PubMed  CAS  Google Scholar 

  • Kato K (1990) Sequence of a novel carbonic anhydrase-related polypeptide and its exclusive presence in Purkinje cells. FEBS Lett 271 137–140

    PubMed  CAS  Google Scholar 

  • Kawarabayasi Y, Sawada M, Horikawa H, Haikawa Y, Hino Y, Yamamoto S, Sekine M, Baba S, Kosugi H, Hosoyama A et al (1998) Complete Sequence and gene organization of the genome of hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT. DNA Research 5: 55–76

    PubMed  CAS  Google Scholar 

  • Kelly CD, Carter ND, Jeffrey S, Edwards YH (1988) Characterization of cDNA clones for rat muscle carbonic anhydrase III. Biosci Rep 8: 401–406

    PubMed  CAS  Google Scholar 

  • Kilstrup M, Lu C-D, Abdelal AHT, Neuhard J (1988) Nucleotide sequence of the carA gene andregulation of the carA operon in Salmonella typhimurium. Eur J Biochem 176: 421–429

    PubMed  CAS  Google Scholar 

  • Kim HJ, Bracey MH, Bartlett SG (1994) Nucleotide sequence of a gene encoding carbonic anhydrase in Arabidopsis thaliana. Plant Physiol 105: 449

    PubMed  CAS  Google Scholar 

  • Kisker C, Schindelin H, Alber BE, Ferry JG, Rees DC (1996) A left-hand β-helix revealed by the crystal structure of a carbonic anhydrase from the archaeon Methanosarcina thermophila. EMBO J 15: 2323–2330

    PubMed  CAS  Google Scholar 

  • Klenk H-P, Clayton RA, Tomb J, White 0, Nelson ICE, Ketchum KA, Dodson RJ, Gwinn M, Hickey EK, Peterson JD et al (1997) The complete genome sequence of the hyperthermo-philic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390: 364–370

    PubMed  CAS  Google Scholar 

  • Konialis CP, Barlow JH, Butterworth PHW (1985) Cloned eDNA for rabbit erythrocyte car-bonic anhydrase I: A novel erythrocyte-specific probe to study development in erythroid tissue. Proc Natl Acad Sci USA 82: 663–667

    PubMed  CAS  Google Scholar 

  • Krueger NX, Saito H (1992) A human transmembrane protein-tyrosine-phosphatase, PTPzeta, is expressed in brain and has an N-terminal domain homologous to carbonic anhydrases. Proc Natl Acad Sci USA 89: 7417–7421

    PubMed  CAS  Google Scholar 

  • Kumar S, Tamura K, Nei M (1993) MEGA: Molecular Evolutionary Genetic Analysis, version 1.0. The Pennsylvania State University, University Park, PA 18602.

    Google Scholar 

  • Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, Azevedo V, Bertero MG, Bessieres P, Bolotin A, Borchert S et al (1997) The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 390: 249–256

    PubMed  CAS  Google Scholar 

  • Lambert T, Gerbaud G, Galimand M, Courvalin P (1993) Characterization of Acinetobacter haemolyticus aac(6’)-Ig gene encoding an aminoglycoside 6’-N-acetyltransferase which modifies amikacin. Antimicrob Agents Chemother 37: 2093–2100

    PubMed  CAS  Google Scholar 

  • Lapidus A, Galleron N, Sorokin A, Ehrlich D (1997) Sequencing and functional annotation of the Bacillus subtilis genes in the 200 kb rrnB-dnaB region. Microbiology 143: 3431–3441

    PubMed  CAS  Google Scholar 

  • Larsson S, Bjorkbacka H, Forsman C, Samuelsson G, Olsson O (1997) Molecular cloning and biochemical characterization of carbonic anhydrase from Populus tremula x tremuloides. Plant Mol Biol 34: 583–592

    PubMed  CAS  Google Scholar 

  • Levy JB, Canoll P, Silvennoinen O, Barnea G, Morse B, Honeggar AM, Huang J-T, Cannizzaro LA, Park S-H, Druck T et al (1993) The cloning of a receptor-type protein tyrosine phosphatase expressed in the central nervous system. JBiol Chem 268: 10573–10581

    CAS  Google Scholar 

  • Lloyd J, McMillan S, Hopkinson D, Edwards YH (1986) Nucleotide sequence and derived amino acid sequence of a cDNA encoding human muscle carbonic anhydrase. Gene 41: 233–239

    PubMed  CAS  Google Scholar 

  • Lloyd J, Brownson C, Tweedie S, Charlton J, Edwards YH (1987) Human mucle carbonic anhydrase: Gene structure and DNA methylation patterns infetal and adult tissues. Genes Dev 1:594–602

    PubMed  CAS  Google Scholar 

  • Lovejoy DA, Hewett-Emmett D, Porter CA, Cepoi D, Sheffield A, Vale WV, Tashian RE (1998) Evolutionarily conserved, “acatalytic” carbonic anhydrase-related protein XI contains a sequence motif present in the neuropeptide sauvagine. The human CA-RP XI gene (CAI I) is embedded between the Secretor gene cluster and the DBP gene at 19q13.3. Genomics 54: 484–493

    PubMed  CAS  Google Scholar 

  • Lowe N, Brady HJM, Barlow JH, Sowden JO, Edwards M, Butterworth PHW (1990) Structure and methylation patterns of the gene encoding human carbonic anhydrase I. Gene 93: 277–283

    PubMed  CAS  Google Scholar 

  • Ludwig M, Burnell JN (1995) Molecular comparison of carbonic anhydrase from Flaveria species demonstrating different photosynthetic pathways. Plant Mol Biol 29: 353–365

    PubMed  CAS  Google Scholar 

  • Maa JS, Rodriguez JF, Esteban M (1990) Structural and functional characterization of a cell surface binding protein of vaccinia virus. J Biol Chem 265: 1569–1577

    PubMed  CAS  Google Scholar 

  • Majeau N, Coleman JR (1991) Isolation and characterization of a eDNA coding for pea chloroplastic carbonic anhydrase. Plant Physiol 95: 264–268

    PubMed  CAS  Google Scholar 

  • Majeau N, Coleman JR (1992) Nucleotide sequence of a complementary DNA encoding tobacco chloroplastic carbonic anhydrase. Plant Physiol 100: 1077–1078

    PubMed  CAS  Google Scholar 

  • Maurel P, Rauch U, Flad M, Margolis RK, Margolis RU (1994) Phosphacan, a chondroitin sulfate proteoglycan of brain that interacts with neurons and neural cell-adhesion molecules, is an extracellular variant of a receptor-type tyrosine phosphatase. Proc Natl Acad Sci USA 91: 2512–2516

    PubMed  CAS  Google Scholar 

  • Maurel P, Meyer-Puttlitz B, Flad M, Margolis RU, Margolis RK (1995) Nucleotide sequence and molecular variants of rat receptor-type protein tyrosine phosphatase ζ/β. DNA Sequence 5: 323–328

    PubMed  CAS  Google Scholar 

  • McCarter LL (1998) OpaR,a homolog of Vibrio harveyi LuxR, controls opacity of Vibrio parahaemolyticus. J Bacteriol 180: 3166–3173

    PubMed  CAS  Google Scholar 

  • McGowan MH, Neubauer JA, Stolle CA (1997) Characterization of the rat carbonic anhydrase II gene structure: sequence analysis of the 5’ flanking region and 3’ UTR. Gene 186: 181–188

    PubMed  CAS  Google Scholar 

  • Mezquita J, Pau M, Mezquita C (1994) A novel carbonic anhydrase II mRNA isolated from mature chicken testis displays a TATA box and other promoter sequences in a leader 5’ untranslated region not present in somatic tissues. Gene 147: 231–235

    PubMed  CAS  Google Scholar 

  • Mitsuhashi S, Miyachi S (1996) Amino acid sequence homology between N- and C-terminal halves of a carbonic anhydrase in Porphyridium purpureum,as deduced from the cloned eDNA. J Biol Chem 271: 28703–28709

    PubMed  CAS  Google Scholar 

  • Miyamoto H, Miyashita T, Okushima M, Nakano S, Morita T, Matsushiiro A (1996) A carbonic anhydrase from the nacreous layer in oyster pearls. Proc Natl Acad Sci USA 93: 9657–9660

    PubMed  CAS  Google Scholar 

  • Montgomery JG, Venta PJ, Eddy RL, Fukushima Y-S, Shows TB, Tashian RE (1991) Characterization of the humangene for a newly discovered carbonic anhydrase, CA VII, and its localization to chromosome 16. Genomics 11: 835–848

    PubMed  CAS  Google Scholar 

  • Montgomery JG, Venta PJ, Tashian RE, Hewett-Emmett D (1987) Nucleotide sequence of human liver carbonic anhydrase II eDNA. Nuel Acids Res 15: 4687

    CAS  Google Scholar 

  • Murakami H, Marelich GP, Grubb JH, Kyle JW, Sly WS (1987) Cloning, expression, and sequence homologies of cDNA for human carbonic anhydrase II. Genomics 1: 159–166

    PubMed  CAS  Google Scholar 

  • Nagao Y, Batanian JR, Clements MF, Sly WS (1995) Genomic organization of the human gene and pseudogene for mitochondrial carbonic anhydrase, CA V, and their localization to chromosome 16q and 16p. Genomics 28: 477–484

    PubMed  CAS  Google Scholar 

  • Nagao Y, Platero JS, Waheed A, Sly WS (1993) Human mitochondrial carbonic anhydrase: eDNA cloning, expression, subcellular localization, and mapping to chromosome 16. Proc Natl Acad Sci USA 90: 7623–7627

    PubMed  CAS  Google Scholar 

  • Nagao Y, Srinivasen M, Platero JS, Svendrowski M, Waheed A, Sly WS (1994) Mitochondrial carbonic anhydrase (CA V) in mouse and rat: cDNA cloning, expression, subcellular localization, processing, and tissue distribution, Proc Natl Acad Sci USA 91: 10330–10334

    PubMed  CAS  Google Scholar 

  • Newman T, deBrujn FJ, Green P, Keegstra K, Kende H, McIntosh L, Ohlrogge J, Raikhel N, Somerville S, Thomashow M et al (1994) Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. Plant Physiol 106: 1241–1255

    PubMed  CAS  Google Scholar 

  • Niles EG, Condit RC, Caro P, Davidson K, Matusick L, Seto J (1986) Nucleotide sequence and genetic map of the 16-kb vaccinia virus HindIII D fragment. Virology 153: 96–112

    PubMed  CAS  Google Scholar 

  • Nolling J, Reeve JN (1997) Growth-and substrate-dependent transcription of the formate dehydrogenase (fdhCAB) operon in Methanobacterium thermoformicicum Z-245. J Bacteriol 179: 899–908

    PubMed  CAS  Google Scholar 

  • Okuyama T, Sato S, Zhu XL, Waheed A, Sly WS (1992) Human carbonic anhydrase IV: cDNA cloning, sequence comparison, and expression in COS cell membranes. Proc Natl Acad Sci USA 89: 1315–1319

    PubMed  CAS  Google Scholar 

  • Okuyama T, Batanian JR, Sly WS (1993) Genomic organization and localization of the gene for human carbonic anhydrase IV to chromosome 17q. Genomics 16: 678–684

    PubMed  CAS  Google Scholar 

  • Opaysky R, Pastorekova S, Zelnik V, Gibadulinova A, Stanbridge EJ, Zavada J, Kettmann R, Pastorek J (1996) Human MN/CA9 gene, a novel member of the carbonic anhydrase family: Structure and exon to protein domain relationship. Genomics 33: 480–487

    Google Scholar 

  • Pastorek J, Pastorekova S, Callebaut I, Mornon JP, Zelnik V, Opaysky R, Zat’ovicova M, Liao S, Portetelle D, Stanbridge EJ et al (1994) Cloning and characterization of MN, a human tumor-associated protein with a domain homologous to carbonic anhydrase and a putative helix-loop-helix DNA binding segment. Oncogene 9: 2877–2888

    PubMed  CAS  Google Scholar 

  • Pastorekova S, Parkkila S, Parkkila AK, Opaysky R, Zelnik V, Sarnio J, Pastorek J (1997) Carbonic anhydrase IX, MN/CA IX: Analysis of stomach CDNA sequence and expression in human and rat alimentary tracts. Gastroenterology 112: 398–408

    PubMed  CAS  Google Scholar 

  • Peterson RE, Tu C, Linser PJ (1997) Isolation and characterization of a carbonic anhydrase homologue from the zebrafish (Danio rerio). J Mol Evol 44: 432–439

    PubMed  CAS  Google Scholar 

  • Price GD, Howitt SM, Harrison K, Badger MR (1993) Analysis of genomic DNA region from the cyanobacterium Synechococcus sp. strain PCC7942 involved in carboxysome assembly and function. J Bacteriol 175: 2871–2879

    PubMed  CAS  Google Scholar 

  • Raetz CRH, Roderick SL (1995) A left-handed parallel βhelix in the structure of UDP-Nacetylglucosamine acetyltransferase. Science 270: 997–1000

    PubMed  CAS  Google Scholar 

  • Raines CA, Horsnell PR, Holder C, Lloyd JC (1992) Arabidopsis thaliana carbonic anhydrase: cDNA sequence and effect of CO2 on mRNA levels. Plant Mol Biol 20: 1143–1148

    PubMed  CAS  Google Scholar 

  • Roeske CA, Ogren WL (1990) Nucleotide sequence of pea cDNA encoding chloroplast car-bonic anhydrase. Nucl Acids Res 18: 3413

    PubMed  CAS  Google Scholar 

  • Rogers JH (1987) Sequence of carbonic anhydrase II cDNA from chick retina. Eur J Biochem 162: 119–122

    PubMed  CAS  Google Scholar 

  • Saitou N, Nei M (1987) The neighbour-joining method: A new method for reconstructing phylogenetic tress. Mol Biol Evol 4: 406–425

    PubMed  CAS  Google Scholar 

  • Satoh A, Iwaski T, Odani S, Shiraiwa Y (1998) Purification, characterization and cDNA cloning of soluble carbonic anhydrase from Chlorella sorokiniana grown under ordinary air. Planta 206: 657–665

    PubMed  CAS  Google Scholar 

  • Schwartz GJ, Winkler C, Zavilowitz BJ, Bargiello TA (1993) Carbonic anhydrase II mRNA is induced in rabbit kidney cortex during chronic metabolic acidosis. Am J Physiol 265: 764–772

    Google Scholar 

  • Shchelkunov SN, Blinov VM, Totmenin AV, Marennikova SS, Kolykhalov AA, Frolov IV, Shizhikov VE, Gytorov VV, Gashikov PV, Belanov EF et al (1993) Nucleotide sequence analysis of variola virus HindIII M, L, genome fragment. Virus Res 27: 25–35

    PubMed  CAS  Google Scholar 

  • Sciaky M, Limozin N, Filippi-Foveau D, Gulian JM, Laurent-Tabusse G (1976) Primary structure of bovine erythrocyte carbonic carbonic anhydrase CI. II. Complete sequence. Biochimie 58: 1071–1082

    PubMed  CAS  Google Scholar 

  • Sharp PM, Cowe E, Higgins DG, Shields DC, Wolfe KH, Wright F (1988) Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster, and Homosapiens: a review of the considerable within-species diversity. Nucl Acids Res 16: 8207–8211

    PubMed  CAS  Google Scholar 

  • Sjoblom B, Elleby B, Wallgren K, Jonasson BH, Lindskog S (1996) Two point mutations convert a catalytically inactive carbonic anhydrase-related protein (CARP) to an active enzyme. FEBS Lett 398: 322–325

    PubMed  CAS  Google Scholar 

  • Skaggs LA, Bergenhem NCH, Venta PJ, Tashian RE (1993) The deduced amino acid sequence of human carbonic anhydrase-related protein (CARP) is 98% identical to the mouse homologue. Gene 126: 291–292

    PubMed  CAS  Google Scholar 

  • Sly WS, Hu PY (1995) Human carbonic anhydrases and carbonic anhydrase deficiencies. Ann Rev Biochem 64: 375–401

    PubMed  CAS  Google Scholar 

  • Smith DR, Doucette-Stamm LA, Deloughery C, Lee H-M, Dubois J, Aldredge T, Bashirzadeh R, Blakely D, Cook R, Gilbert K et al (1997) Complete genome sequence of Methanobacterium thermoautotrophicus delta H: Functional analysis and comparative genomics. J Bacteriol 179: 7135–7155

    PubMed  CAS  Google Scholar 

  • Soltes-Rak E, Mulligan ME, Coleman JR (1997) Identification and characterization of a gene encoding a vertebrate-type carbonic anhydrase in cyanobacteria. J Bacteriol 179: 769–774

    PubMed  CAS  Google Scholar 

  • Stolle CA, McGowan MH, Heim RA, Varia M, Neubauer JA (1991) Nucleotide sequence of a cDNA encoding rat brain carbonic anhydrase II and its deduced amino acid sequence. Gene 109: 265–267

    PubMed  CAS  Google Scholar 

  • Strayer DS, Jerng HH, O’Connor K (1991) Sequence and analysis of a portion of the genomes of Shope fibroma virus and malignant rabbit fibroma virus that is important for viral replication and lymphocytes. Virology 185: 585–595

    PubMed  CAS  Google Scholar 

  • Strayer DS, Jerng HH (1992) Sequence and analysis of the BamHI “D” fragment of Shope fibroma virus: Comparison with similar regions of related poxviruses. Virus Res 25: 117–132

    PubMed  CAS  Google Scholar 

  • Sung Y-C, Fuchs JA (1988) Characterization of the cyn operon in Escherichia coli K12. J Biol Chem 263: 14769–14775

    PubMed  CAS  Google Scholar 

  • Suzuki E, Fukuzawa H, Miyata S (1991) Identification of a genomic region that complements a temperature-sensitive, high CO2 requiring mutant of the cyanobacterium, Synechococcus sp. PCC7942. Mol Gen Genet 226: 401–408

    PubMed  CAS  Google Scholar 

  • Suzuki S, Burnell JN (1995) Nucleotide sequence of a cDNA encoding rice chloroplastic carbonic anhydrase. Plant Physiol 107: 299–300

    PubMed  CAS  Google Scholar 

  • Tamai S, Cody LB, Sly WS (1994) Molecular cloning of the mouse gene coding for carbonic anhydrase IV. Biochem Genet 34: 31–43

    Google Scholar 

  • Tanis RJ, Ferrell RE, Tashian RE (1974) Amino acxid sequence of sheep carbonic anhydrase C. Biochim Biophys Acta 371: 534–548

    PubMed  CAS  Google Scholar 

  • Tashian RE (1989) The carbonic anhydrases: Widening perspectives on their evolution, expression, and function. Bioessays 10: 186–192

    PubMed  CAS  Google Scholar 

  • Tashian RE (1992) Genetics of the mammalian carbonic anhydrases. Adv in Genetics 30: 321–356

    CAS  Google Scholar 

  • Tashian RE, Stroup SK, Hall GE (1981) Primary sequence of turtle low-activity red cell carbonic anhydrase: Homology with mammalian low-activity CA I isozymes. Fed Proc 40: 1677

    Google Scholar 

  • Tashian RE, Hewett-Emmett D, Stroup SK, Goodman M, Yu Y-S (1980) Evolution of structure and function in the carbonic anhydrase isozymes of mammals. In: C Bauer, G Gros, H Bartels (eds): Biophysics and Physiology of CO 2 , Springer-Verlag, Berlin Heidelberg New York, 165–176

    Google Scholar 

  • Thiele D, Willems H, Haas M, Krauss H (1994) Analysis of the entire nucleotide sequence of the cryptic plasmic QpH1 from Coxiella burnetti. Eur J Epidemiol 10: 413–420

    PubMed  CAS  Google Scholar 

  • Tomb J-F, White O, Kerlavage AR, Clayton RA, Sutton GG, Fleischmann RD, Ketchum KA, Klenk HP, Gill S, Dougherty BA et al (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388: 539–547

    PubMed  CAS  Google Scholar 

  • Torczynski RM, Bollon AP (1996) Gene sequence and probe for a marker of non-small cell lung carcinoma. US Patent 5589579

    Google Scholar 

  • Türeci Ö, Sahin U, Vollmar E, Siemer S, Gottert E, Seitz G, Parkkila A-K, Shah G, Grubb JH, Pfreundschuh M et al (1998) Human carbonic anhydrase XII: cDNA cloning, expression, and chromosomal location of a carbonic anhydrase gene that is overexpressed in some renal cell cancers. Proc Natl Acad Sci USA 95: 7608–7613

    PubMed  Google Scholar 

  • Tweedie S, Edwards Y (1989) Mouse carbonic anhydrase III: Nucleotide sequence and expression studies. Biochem Genet 27: 17–30

    PubMed  CAS  Google Scholar 

  • Valdivia RH, Falkow S (1997) Fluorescence-based isolation of bacterial genes expressed within host cells. Science 277: 2007–2011

    PubMed  CAS  Google Scholar 

  • Venta PJ, Montgomery JC, Hewett-Emmett D, Wiebauer K, Tashian RE (1985) Structure and exon to protein domain relationships of the mouse carbonic anhydrase II gene. J Biol Chem 260: 12130–12135

    PubMed  CAS  Google Scholar 

  • Venta PJ, Welty RJ, Johnson RM, Sly WS, Tashian RE (1991) Carbonic anhydrase II deficiency syndrome in a Belgian family is caused by a point mutation at an invariant histidine residue (107 His→Tyr): Complete structure of the normal human gene. Amer J Hum Gen 49: 1082–1090

    CAS  Google Scholar 

  • Villand P, Eriksson M, Samuelsson G (1997) Carbon dioxide and light regulation of promotors controlling the expression of mitochondrial carbonic anhydrase in Chlamydomonas reinhardtii. Biochem J 327: 51–57

    PubMed  CAS  Google Scholar 

  • Vuorio R, Haerkonen T, Tolvanen M, Vaara M (1994) The novel hexapeptide motif found in the acyltransferases LpxA and LpxD of lipid A biosynthesis is conserved in various bacteria. FEBS Lett. 337: 289–292

    PubMed  CAS  Google Scholar 

  • Wade R, Gunning P, Erry R, Shows T, Kedes L (1986) Nucleotide sequence, tissue-specific expression, and chromosome location of human carbonic anhydrase III: The human CAIH gene is located on the same chromosome as the closely linked CAI and CAII genes. Proc Natl Acad Sci USA 83: 9571–9575

    PubMed  CAS  Google Scholar 

  • Wang LQ, Baldwin RL VI, Jesse BW (1996) Isolation and characterization of a cDNA clone encoding ovine type I carbonic anhydrase. J Anim Sci 74: 345–353

    PubMed  CAS  Google Scholar 

  • Wang XZ, Kuroda M, Sok J, Batchvarova N, Kimmel R, Chung P, Zinszner H, Ron D (1998) Identification of novel stress-induced genes downstream of chop.EMBO J 17: 3619–3630

    PubMed  CAS  Google Scholar 

  • Wary KK, Lou Z, Buchberg AM, Siracusa LD, Druck T, LaForgia S, Huebner K (1993) A homozygous deletion within the carbonic anhydraselike domain of the Ptprg gene in murine L-cells. Cancer Res 53: 1498–1502

    PubMed  CAS  Google Scholar 

  • Waterson R, Martin C, Craxton M, Huynh G, Coulson A, Hillier L, Durbin RK, Green P, Shownkeen R, Halloran N et al (1992) A survey of expressed genes in Caenorhabditis elegans. Nature Gen 1:114–123

    Google Scholar 

  • Wilson R, Ainscough R, Anderson K, Baynes C, Berks M, Bonfield J, Burton J, Connell M, Copsey T, Cooper J et al. (1994) 2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans. Nature 368: 32–38

    CAS  Google Scholar 

  • Winkler CA, Kittelberger AM, Schwartz GJ (1997) Expression of carbonic anhydrase IV mRNA in rabbit kidney: stimulation by metabolic acidosis. Am J Physiol 272: F551–F560

    PubMed  CAS  Google Scholar 

  • Yamada S, Komori T, Kubo T, Imaseki H (1998) A cDNA clone for salt-stress-induced carbonic anhydrase from Nicotiana paniculata (Accession No. AB012863). Plant Physiol 117: 1126

    Google Scholar 

  • Yoshihara CM, Lee J-D, Dodgson JB (1987) The chicken carbonic anhydrase II gene: Evidence for a recent shift in interon position. Nucl Acids Res15: 753–770

    PubMed  CAS  Google Scholar 

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Authors and Affiliations

  1. Human Genetics Center School of Public Health, University of Texas—Houston Health Science Center, Houston, TX, 77225-0334, USA

    David Hewett-Emmett

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  1. David Hewett-Emmett
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  1. Lake Erie College of Osteopathic Medicine, 1858 West Grandview Boulevard, Erie, PA, 16509, USA

    W. Richard Chegwidden

  2. Medical Genetics Unit, St George’s Hospital Medical School, London, SW17 0RE, UK

    Nicholas D. Carter

  3. MRC Human Biochemical Genetics Unit, Wolfson House, University College London, 4, Stephenson Way, London, NW1 2HE, UK

    Yvonne H. Edwards

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Hewett-Emmett, D. (2000). Evolution and distribution of the carbonic anhydrase gene families. In: Chegwidden, W.R., Carter, N.D., Edwards, Y.H. (eds) The Carbonic Anhydrases. EXS 90, vol 90. Birkhäuser, Basel. https://doi.org/10.1007/978-3-0348-8446-4_3

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  • DOI: https://doi.org/10.1007/978-3-0348-8446-4_3

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