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Solid-State NMR Investigations of Membrane-Associated Antimicrobial Peptides

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Antimicrobial Peptides

Part of the book series: Methods in Molecular Biology ((MIMB,volume 618))

Abstract

Solid-state NMR and other biophysical investigations have revealed many mechanistic details about the interactions of antimicrobial peptides with membranes. These studies have shaped our view on how these peptides cause the killing of bacteria, fungi, or tumour cells and how they permeabilize model membranes. As a result, we better understand the biological activities of these peptides and we are now able to design new and better sequences. Here we present some of the tools that have allowed these solid-state NMR investigations, including detailed protocols on how to reconstitute the peptides into oriented or non-oriented membranes as well as simple set-up procedures for 2H as well as proton-decoupled 31P or 15N solid-state NMR measurements. Static and magic angle spinning experiments are described. Where adequate, the special requirements for or limitations of some of the measurements are discussed. Solid-state NMR spectra of both lipids and peptides have been recorded, and through the ensemble of measurements a detailed picture of these complex peptide–lipid supramolecular systems has finally emerged.

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References

  1. Bechinger, B. (1999) The structure, dynamics and orientation of antimicrobial peptides in membranes by solid-state NMR spectroscopy. Biochim. Biophys. Acta 1462, 157–183.

    Article  PubMed  CAS  Google Scholar 

  2. Bechinger, B., Kim, Y., Chirlian, L. E., Gesell, J., Neumann, J.-M., Montal, M., Tomich, J., Zasloff, M., and Opella, S. J. (1991) Orientations of amphipathic helical peptides in membrane bilayers determined by solid-state NMR spectroscopy. J. Biomol. NMR 1, 167–173.

    Article  PubMed  CAS  Google Scholar 

  3. Bechinger, B. (1996) Towards membrane protein design: pH dependent topology of histidine-containing polypeptides. J. Mol. Biol. 263, 768–775.

    Article  PubMed  CAS  Google Scholar 

  4. Vogt, T. C. B. and Bechinger, B. (1999) The interactions of histidine-containing amphipathic helical peptide antibiotics with lipid bilayers: the effects of charges and pH. J. Biol. Chem. 274, 29115–29121.

    Article  PubMed  CAS  Google Scholar 

  5. Bechinger, B. (2009) Rationalizing the membrane interactions of cationic amphipathic antimicrobial peptides by their molecular shape. Curr. Opin. Colloid Interface Sci. 14, 349–355.

    Article  CAS  Google Scholar 

  6. Mason, A. J., Martinez, A., Glaubitz, C., Danos, O., Kichler, A., and Bechinger, B. (2006) The antibiotic and DNA-transfecting peptide LAH4 selectively associates with, and disorders, anionic lipids in mixed membranes. FASEB J. 20, 320–322.

    PubMed  CAS  Google Scholar 

  7. Bechinger, B., Zasloff, M., and Opella, S. J. (1993) Structure and orientation of the antibiotic peptide magainin in membranes by solid-state NMR spectroscopy. Protein Sci. 2, 2077–2084.

    Article  PubMed  CAS  Google Scholar 

  8. Bechinger, B., Zasloff, M., and Opella, S. J. (1998) Structure and dynamics of the antibiotic peptide PGLa in membranes by multidimensional solution and solid-state NMR spectroscopy. Biophys. J. 74, 981–987.

    Article  PubMed  CAS  Google Scholar 

  9. Bechinger, B. and Sizun, C. (2003) Alignment and structural analysis of membrane polypeptides by 15 N and 31P solid-state NMR spectroscopy. Concepts Magn. Reson. A 18A, 130–145.

    Article  CAS  Google Scholar 

  10. Aisenbrey, C. and Bechinger, B. (2004) Investigations of peptide rotational diffusion in aligned membranes by 2H and 15N solid-state NMR spectroscopy. J. Am. Chem. Soc. 126, 16676–16683.

    Article  PubMed  CAS  Google Scholar 

  11. Cullis, P. R. and De Kruijff, B. (1979) Lipid polymorphism and the functional roles of lipids in biological membranes. Biochim. Biophys. Acta 559, 399–420.

    Article  PubMed  CAS  Google Scholar 

  12. Bechinger, B. (2005) Detergent-like properties of magainin antibiotic peptides: a 31P solid-state NMR study. Biochim. Biophys. Acta 1712, 101–108.

    Article  PubMed  CAS  Google Scholar 

  13. Cady, S. D., Goodman, C., Tatko, C. D., DeGrado, W. F., and Hong, M. (2007) Determining the orientation of uniaxially rotating membrane proteins using unoriented samples: a 2H, 13C, and 15N solid-state NMR investigation of the dynamics and orientation of a transmembrane helical bundle. J. Am. Chem. Soc. 129, 5719–5729.

    Article  PubMed  CAS  Google Scholar 

  14. Prongidi-Fix, L., Bertani, P., and Bechinger, B. (2007) The membrane alignment of helical peptides from non-oriented 15N chemical shift solid-state NMR spectroscopy. J. Am. Chem. Soc. 129, 8430–8431.

    Article  PubMed  CAS  Google Scholar 

  15. Salnikov, E. S., Mason, A. J., and Bechinger, B. (2009) Membrane order perturbation in the presence of antimicrobial peptides by 2H solid-state NMR spectroscopy. Biochimie 91, 734–743.

    Article  PubMed  CAS  Google Scholar 

  16. Aisenbrey, C. and Bechinger, B. (2004) Tilt and rotational pitch angles of membrane-inserted polypeptides from combined 15 N and 2H solid-state NMR spectroscopy. Biochemistry 43, 10502–10512.

    Article  PubMed  CAS  Google Scholar 

  17. Aisenbrey, C., Sizun, C., Koch, J., Herget, M., Abele, U., Bechinger, B., and Tampe, R. (2006) Structure and dynamics of membrane-associated ICP47, a viral inhibitor of the MHC I antigen-processing machinery. J. Biol. Chem. 281, 30365–30372.

    Article  PubMed  CAS  Google Scholar 

  18. Bechinger, B., Bertani, P., Werten, S., Mendonca de Moraes, C., Aisenbrey, C., Mason, A. J., Perrone, B., Prudhon, M., Sudheendra, U. S., and Vidovic, V. (2009) The structural and topological analysis of membrane polypeptides by oriented solid-state NMR spectroscopy: sample preparation and theory. In Membrane-Active Peptides: Methods and Results on Structure and Function. M. Castanho (Ed.), in press. La Jolla: International University Line.

    Google Scholar 

  19. Vidovic, V., Prongidi-Fix, L., Bechinger, B., and Werten, S. (2009) A versatile and highly efficient method for the production of antimicrobial peptides in Escherichia coli. J. Pept. Sci. 15, 278–284.

    Article  PubMed  CAS  Google Scholar 

  20. Salnikov, E. S., Friedrich, H., Li, X., Bertani, P., Hertweck, C., Reissmann, S., O‘Neil, J. D. J., Rapp, J., and Bechinger, B. (2009) Structure and alignment of the membrane-associated peptaibols ampullosporin A and alamethcin by 15N and 31P solid-state NMR spectroscopy. Biophys. J. 96, 86–100.

    Article  PubMed  CAS  Google Scholar 

  21. Bechinger, B. and Opella, S. J. (1991) Flat-coil probe for NMR spectroscopy of oriented membrane samples. J. Magn. Reson. 95, 585–588.

    Google Scholar 

  22. Nielsen, N. C., Daugaard, P., Langer, V., Thomsen, J. K., Nielsen, S., Sorensen, O. W., and Jakobsen, H. J. (1995) A flat-coil NMR probe with hydration control of oriented phospholipid-bilayer samples. J. Biomol. NMR 5, 311–314.

    Article  PubMed  CAS  Google Scholar 

  23. Andrushchenko, V. V., Vogel, H. J., and Prenner, E. J. (2007) Optimization of the hydrochloric acid concentration used for trifluoroacetate removal from synthetic peptides. J. Pept. Sci. 13, 37–43.

    Article  PubMed  CAS  Google Scholar 

  24. Berger, S. and Braun, S. (2004) 200 and More Basic NMR Experiments: A Practical Course. Weinheim: Wiley-VCH Verlag.

    Google Scholar 

  25. Davis, J. H., Jeffrey, K. R., Bloom, M., Valic, M. I., and Higgs, T. P. (1976) Quadrupolar echo deuteron magnetic resonance spectroscopy in ordered hydrocarbon chains. Chem. Phys. Lett. 42, 390–394.

    Article  CAS  Google Scholar 

  26. Rance, M. and Byrd, R. A. (1983) Obtaining high-fidelity spin-1/2 powder spectra in anisotropic media: phase-cycled Hahn echo spectroscopy. J. Magn. Res. 52, 221–240.

    CAS  Google Scholar 

  27. Ottiger, M. and Bax, A. (1998) Characterization of magnetically oriented phospholipid micelles for measurement of dipolar couplings in macromolecules. J. Biomol. NMR 12, 361–372.

    Article  PubMed  CAS  Google Scholar 

  28. Salnikov, E. S., Friedrich, H., Li, X., Bertani, P., Reissmann, S., Hertweck, C., O‘Neil, J. D., Raap, J., and Bechinger, B. (2009) Structure and alignment of the membrane-associated peptaibols ampullosporin A and alamethicin by oriented 15N and 31P solid-state NMR spectroscopy. Biophys. J. 96, 86–100.

    Article  PubMed  CAS  Google Scholar 

  29. O‘Brian, F. E. M. (1948) The control of humidity by saturated salt solutions. J. Sci. Instr. 25, 73–76.

    Article  Google Scholar 

  30. Sani, M. A., Loudet, C., Grobner, G., and Dufourc, E. J. (2007) Pro-apoptotic bax-alpha1 synthesis and evidence for beta-sheet to alpha-helix conformational change as triggered by negatively charged lipid membranes. J. Pept. Sci. 13, 100–106.

    Article  PubMed  CAS  Google Scholar 

  31. Roux, S., Zekri, E., Rousseau, B., Paternostre, M., Cintrat, J. C., and Fay, N. (2008) Elimination and exchange of trifluoroacetate counter-ion from cationic peptides: a critical evaluation of different approaches. J. Pept. Sci. 14, 354–359.

    Article  PubMed  CAS  Google Scholar 

  32. Bechinger, B., Ruysschaert, J. M., and Goormaghtigh, E. (1999) Membrane helix orientation from linear dichroism of infrared attenuated total reflection spectra. Biophys. J. 76, 552–563.

    Article  PubMed  CAS  Google Scholar 

  33. Hallock, K. J., Henzler, W. K., Lee, D. K., and Ramamoorthy, A. (2002) An innovative procedure using a sublimable solid to align lipid bilayers for solid-state NMR studies. Biophys. J. 82, 2499–2503.

    Article  PubMed  CAS  Google Scholar 

  34. Glaubitz, C. and Watts, A. (1998) Magic angle oriented sample spinning (MAOSS) – A new approach toward biomembrane studies. J. Magn. Reson. 130, 305–316.

    Article  PubMed  CAS  Google Scholar 

  35. Sizun, C. and Bechinger, B. (2002) Bilayer samples for fast or slow magic angle oriented sample spinning solid-state NMR spectroscopy. J. Am. Chem. Soc. 124, 1146–1147.

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

We are thankful to Vaincre la Mucoviscidose (TG0101), the Association pour la Recherche sur le Cancer (No. 3100), the Agence Nationale pour la Recherche, the RMN Grand-Est Network of the Ministry of Recherche, the International Center for Frontier Research in Chemistry, and the European Union (MCRTN 33439-Biocontrol) for supporting our projects. The Institute for Supramolecular Chemistry of the University of Strasbourg (ISIS) is acknowledged for hosting the laboratory.

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Aisenbrey, C., Bertani, P., Bechinger, B. (2010). Solid-State NMR Investigations of Membrane-Associated Antimicrobial Peptides. In: Giuliani, A., Rinaldi, A. (eds) Antimicrobial Peptides. Methods in Molecular Biology, vol 618. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-60761-594-1_14

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  • DOI: https://doi.org/10.1007/978-1-60761-594-1_14

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-60761-593-4

  • Online ISBN: 978-1-60761-594-1

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