Mobile DNA Tools

Articles (8 in this collection)

1. Identification of transposable element families from pangenome polymorphisms

   Authors

   • Pío Sierra
   • Richard Durbin

   • Content type: Methodology
   • Open Access
   • Published: 26 June 2024

   • Article: 13

   

2. Teaching transposon classification as a means to crowd source the curation of repeat annotation – a tardigrade perspective

   Authors (first, second and last of 41)

   • Valentina Peona
   • Jacopo Martelossi
   • Alexander Suh

   • Content type: Research
   • Open Access
   • Published: 06 May 2024

   • Article: 10

   

3. Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats

   Authors

   • Anthony B. Garza
   • Emmanuelle Lerat
   • Hani Z. Girgis

   • Content type: Software
   • Open Access
   • Published: 16 April 2024

   • Article: 8

   

4. RepEnTools: an automated repeat enrichment analysis package for ChIP-seq data reveals hUHRF1 Tandem-Tudor domain enrichment in young repeats

   Authors

   • Michel Choudalakis
   • Pavel Bashtrykov
   • Albert Jeltsch

   • Content type: Methodology
   • Open Access
   • Published: 03 April 2024

   • Article: 6

   

5. Orthoptera-TElib: a library of Orthoptera transposable elements for TE annotation

   Authors (first, second and last of 4)

   • Xuanzeng Liu
   • Lina Zhao
   • Yuan Huang

   • Content type: Research
   • Open Access
   • Published: 15 March 2024

   • Article: 5

   

6. CRISPR-TE: a web-based tool to generate single guide RNAs targeting transposable elements

   Authors (first, second and last of 6)

   • Yixin Guo
   • Ziwei Xue
   • Wanlu Liu

   • Content type: Software
   • Open Access
   • Published: 01 February 2024

   • Article: 3

   

7. Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast

   Authors (first, second and last of 5)

   • Jingxuan Chen
   • Preston J. Basting
   • Casey M. Bergman

   • Content type: Research
   • Open Access
   • Published: 14 July 2023

   • Article: 8

   

8. A beginner’s guide to manual curation of transposable elements

   Authors (first, second and last of 6)

   • Clement Goubert
   • Rory J. Craig
   • Anna V. Protasio

   • Content type: Methodology
   • Open Access
   • Published: 30 March 2022

   • Article: 7