Abstract
The green plants and herbivorous insects are engaged in a constant struggle for dominance. Humans usually intervene in this struggle by developing pest-resistant genotypes and other pest management tactics. Upon failure of a previously successful tactic to which the insect population has apparently adapted, the latter is often considered to be a novel or distinct entity and termed as a “biotype.” The success of host plant resistance (HPR) strategy is constantly challenged by the occurrence of resistance-breaking insect biotypes. In general, the term “biotype” usually designates an intraspecific group of organisms that are not morphologically distinguishable, but differ by a biological function. Variation among individuals within populations has always been the focus of population genetics. However, the term “biotype” includes the entities that are not consistent either within or between biotypes, and their underlying genetic composition and origins, while generally unknown, are likely heterogeneous within and variable between biotypes. Biotypes may differ in some biological parameters, including detoxification pathways, reproductive rate, dispersal, virus vectoriality, and capacity to damage plants, and are well defined by microsatellite polymerase chain reaction (PCR)-based DNA markers. Insect biotypes feeding on different species of host plants are particularly well documented. To slow down the process of biotype selection, crop cultivars with broad genetic bases are needed. The durability of host plant resistance can be enhanced by identifying a wide array of potential insect-resistant genes and ensuring their incorporation in commercially important cultivars.
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Plants defend themselves from herbivore damage through a plethora of structural and chemical defenses. These defenses may have exerted enormous selection pressure on the insects resulting in the evolution of counter-defenses (adaptations) in herbivorous insects. The process of plant defense and insect counter-defense is fast tracked in the agroecosystem where humans purposely select insect-resistant plants for cultivation. In this process, the eighteenth and early nineteenth centuries saw the development and cultivation of several insect-tolerant cultivars. However, with the discovery of Gregor Mendel’s basic tenets of heredity and plant hybridization in the late nineteenth century, this approach of breeding of insect-resistant plants received scientific impetus. Host plant resistance (HPR) has become an important component of integrated pest management (IPM), and several scientists have tried to define it in their own words. Painter (1951) defined it as “the relative amount of heritable qualities possessed by the plant which influence the ultimate degree of damage done by the insect in the field.” In practical agriculture, resistance represents the ability of a certain variety to produce a larger crop of good quality than do ordinary varieties at the same level of insect population. Panda and Khush (1995) further extended it as “any degree of host reaction less than full immunity.” The breeding of resistant cultivars is a continuous process as genes for insect resistance in the cultivars may gradually be overwhelmed by the development of insect biotypes possessing essential genetic attributes of overcoming the corresponding properties of insect-resistance genes in plants.
13.1 Biotype Concept
Herbivorous insects are commonly known to escape the tactics deployed for their management. As per Downie (2010), when a previously known successful weapon for pest management fails, the insect population has apparently revamped itself to it and is often considered to be a new or distinct entity, given the nonformal category “biotype.” It is a fact that the phenotypic variation is omnipresent in natural populations and interpretation of the nature of phenotypic distinctness requires an elucidation of the genetic and environmental variation that causes it, which requires a thorough understanding of the hierarchic structure of alleles within loci, genes within individuals, individuals within populations, and populations within species (Downie 2010).
The biotype concept has been reviewed by several authors over the years (Thorpe 1930; Smith 1941; Eastop 1973; Claridge and den Hollander 1983; Diehl and Bush 1984; Saxena and Barrion 1987; Downie 2010). Printz (1937) and Painter (1941) applied the term “biotype” to situations where the insect response was indifferent to crop plants developed for their resistance to insect feeding.
Biotypes have been defined as populations within an arthropod species that show variations in their ability to effectively use a trait deployed by a plant cultivar (Gallun and Khush 1980; Wilhoit 1992; Pedigo 1999). A routine method of identifying biotypes is by exposing a set of plant cultivars, each possessing a different insect-resistant gene(s) that reacts differentially to a given insect biotype (Starks and Burton 1972; Saxena and Barrion 1983; Tomar and Prasad 1992; Ratcliffe and Hatchett 1997). Nielson et al. (1970) defined biotype as the populations that can reproduce and survive on cultivars developed for resistance to a particular insect or can resist insecticides. As per Gallun (1978), a biotype is an individual or a population whose phenotype is determined by the interaction between plants having different genes for resistance and the larvae’s ability or inability to survive on and stunt the plant. However, Saxena and Barrion (1987) opined that the term biotype is an intraspecific category referring to insect populations of similar genetic composition for a biological attribute. The biotype populations may be partially and temporarily sympatric, allopatric, or parapatric with other compatible populations but differ in one or more biological attributes. Granett et al. (2001) have tried to clarify the concept of biotypes, strain, and host race: “strain designates a population arising from a single collection or clonal individual; biotype is a category designating shared phenotypic traits; host race is a biotype that is better adapted to a specific host than are other biotypes.”
The gene-for-gene relationship between insect virulence genes and the genes for plant resistance is very much alike to that explained by Flor (1971) for the genes contributing pathogen resistance in plants and the corresponding genes for virulence in the pathogens. The virulence or avirulence of an insect biotype to a gene contributing to plant resistance depends on the extent of interaction between the resistance genes in the host plant and virulence genes in the insect. Upon recognition of the gene products of the avirulent insect by the defense system of the resistant plant, the insect finds it difficult to infest a resistant plant. On the other hand, when a resistant plant is unable to distinguish insect gene products, the virulent insect biotype overcomes the plant resistance gene(s). Puterka and Burton (1990) suggested that insect biotypes originate from a pre-existing variability for virulence or mutations resulting from sexual recombination or from the exposure to plant resistance gene selection pressure resulting in a variation in the insect virulence gene frequency. The level of resistance exerted by the plant resistance gene, the initial virulence gene frequency, and the extent of interaction between the genotype, the insect, and the environment decide the intensity and duration of virulence gene expression.
However, Claridge and Den Hollander (1983) opined that insects capable of reproducing parthenogenetically are different in kind to those reproducing bisexually. Many insects reproducing by means of parthenogenesis fall outside the scope of the biological species concept, because such organisms multiply without any exchange of genetic material with other organisms. With the passage of time, new mutants may evolve, resulting in new forms which may differ in some important traits, such as host or other habitat requirements. In pea aphid, Acyrthosiphon pisum (Harris), with the adaptation of parthenogenetic clones to different species of host plants, the new biotypes arise annually (Frazer 1972). According to Claridge and Den Hollander (1983), there is a little evidence to suggest that gene-for-gene relationship is usual or indeed common for insect-plant feeding relationships. The existence of a gene-for-gene relationship has been clearly established in case of Hessian fly, the only biparental species of insect.
Claridge and Den Hollander (1983) further argued to dispense away with the term “biotype” due to the confusion of two distinct schools of thought. The first concept applies both to individuals and to populations of a species which share certain biological characteristics, usually concerning virulence on different host varieties (synonymous with host race), with little or no knowledge of their genetic bases. The second is a very specific concept concerning the gene-for-gene relationship, in which a gene for virulence in a pest is known to correspond with a specific gene for resistance in the host plant. While considering the two schools of thoughts, the first one appears to be of little importance and may be potentially misleading as in case of the rice brown planthopper. However, the specific concept holds limited applicability since it is dependent upon the detailed genetic analyses which are available in very few cases.
Downie (2010) echoed the call given by Claridge and Den Hollander (1983) to dispense with the term and extended that the segregation of alleles and dynamics of gene frequencies (genotypic variation) should be the criteria for understanding the differences in virulence to host plant resistance and resistance should be deployed against genetically distinct populations not imagined homogenous “biotypes.” The entities falling under the umbrella term “biotype” are not consistent either within or between biotypes, and their underlying genetic composition and origins, while generally unknown, are likely heterogeneous within and variable between biotypes.
The use of the term biotype suffers from some problems due to limited knowledge about the genetic makeup of different insect biotypes (Smith 2005). A major tenant of Flor’s (1971) concept assumes that there exist single-gene relationships between the host plant and the pest. However, as per Wilhoit (1992), the insect biotypes may refer to populations expressing a particular set of virulence genes or to those insect populations reacting in the same fashion to a set of plant differentials with more than one gene. Mitchell-Olds and Bergelson (2000) suggested that the use of a gene-for-gene concept may be oversimplified due to the recent innovations in the field of plant genomics and that a “gene-for-genome” concept will allow simultaneous evaluation of several resistance genes involved in potentially overcoming a pest virulence gene. A thorough understanding of the genome-wide changes in the reaction of several plant resistance genes to an insect pest is required. For this to happen, the researchers must rely on existing gene models and a working definition of biotypes that include both individuals and populations that exhibit virulence to different genes in insect-resistant plant genotypes (Smith 2005).
13.2 Insect Biotypes in Important Crop Pests
The development of insect biotypes limits the prediction of their available host range, thus complicating the management strategies in different commercial crops. The biotypes may render the previously known resistant crop cultivars to succumb to insect injury, leading to economic losses. Continuous development of arthropod pest biotypes poses a continuous threat to the stability of resistant crop varieties as well as to the sustainability of the breeding programs focused on insect resistance. The development of abundant biotypes of rice insect pests hampered the progress of the breeding programs in several rice-growing countries in Asia (Saxena and Rueda 1982; Saxena and Barrion 1985).
Insect biotype development has been documented in several orders of insects (Thorpe 1930, 1940; Smith 1941). Classical cases of biotype development like in case of grape phylloxera, European corn borer, Hessian fly, corn leaf aphid, greenbug, and pea aphid (Painter 1951) laid the foundation for reorienting the breeding strategies in major crops. According to Pathak (1970), insect biotypes have been known to be developed in at least eight species of insect pests affecting agricultural crops. Saxena and Barrion (1987) documented biotypes to occur in 36 arthropod species belonging to 17 families from six orders. Aphids contribute almost half of these pest species with known biotypes.
Later, van der Arend (2003) listed biotype developments in several insect pests, majority of which overlapped with those documented by Saxena and Barrion (1987). It was Smith (2005), who updated this list of arthropod biotypes associated with plant resistance genes and gave a comprehensive overview of the existing biotypic diversity among arthropod pests in major crops like fruits, legumes, cereals (maize, rice, wheat), and several vegetables. Almost 18 different arthropod species belonging to orders Homoptera, Diptera, Acari, and one species of Coleoptera have been documented to develop virulent biotypes to plant resistance genes (Smith 2005). Parthenogenetic reproduction plays an immense role in contributing greatly toward the successful development of resistance-breaking biotypes in 10 of the 18 aphid species. Since aphids outnumber the entire documented cases of arthropod biotypes, the review by Smith and Chuang (2014) dealt in detail about the physiological, behavioral, genetic, and molecular cues regulating aphid host selection and the genetics and genomics of developed and deployed aphid-resistant cultivars. In their work, these authors documented 17 aphid species comprising more than 50% of all arthropod biotypes to demonstrate virulence. In some of these cases, the selection pressure exerted by the monogenic-based antibiosis resistance leads to the development of virulence in the aphid.
Many cases of emergence of several new resistance-breaking biotypes have been documented in several crop cultivars. Table 13.1 lists the documented cases of arthropod biotype development, till date, in various crop plants. About 50 arthropod species belonging to 20 families from seven orders have been so far documented to exist as biotypes in various agricultural crops across the globe. Majority of the arthropod biotypes have been documented to exist in the order Hemiptera (33) followed by Diptera (6), Coleoptera (4), Lepidoptera (3), Thysanoptera (2), Trombidiformes (1), and Prostigmata (1). Aphids continue to outnumber all other arthropod species as far as biotype development is concerned with as many as 24 species recorded on different host plants. Due to the enormous variations in aphid host plant specificity and reproductive biology, the avoidance of aphid virulence throws challenges to crop protection (Smith and Chuang 2014). However, enough evidence exists whereby the development of insect biotypes can be delayed or avoided through combined plant breeding and pest management efforts.
13.3 Factors Responsible for Biotype Evolution
The possible causes for biotype evolution have been reviewed by several workers (Ruggle and Gutierrez 1995; Porter et al. 1997; Birkle and Douglas 1999; Smith 2005; Michel et al. 2011). As per Xiang Dong et al. (2004), the insect biotypes have their genetic bases, including the mutation or change in the sequence of enzymes and chromosomes, assortive mating and genetic differentiation of population, and, of course, sexual reproduction. Puterka and Burton (1990) suggested several factors such as selection pressure exerted by the resistance genes, mutations, or preexisting differences in virulence; sexual recombinations may lead to the development of insect biotypes. However, the initial virulence gene frequency, the category of resistance exhibited by the plant resistance gene, and the interaction between the genotype, the pest, and the environment ultimately decide the intensity and duration of virulence gene expression.
There exists a direct correlation between the use of insect-resistant cultivars and the subsequent evolution of new insect biotypes. Biotype development in several insects is related to variations in the composition of the resistance genes in the deployed resistant cultivars. The question of how greenbug, Schizaphis graminum (Rondani), biotypes develop has been answered at the population, organism, and gene levels (Smith 2005). However, as per Porter et al. (1997), there exists no correlation between the occurrences of new greenbug biotypes with the deployment of greenbug-resistant wheat cultivars. Since the resistance in Gb3, Gb4, Gb5, and Gb6 has never existed in a wheat cultivar in the field, therefore, the gene-for-gene relationship had no effect on the development of biotypes of S. graminum. In case of sorghum, the relationship between the use of resistant hybrids and the evolution of new biotypes has been established in only three of the 11 biotypes of greenbug. However, no clear relationship evidence has been established even within these three biotypes (Sharma 2009).
Biotype selection is also dependent upon the geographic extent to which resistant cultivars are planted throughout the insects’ host range (Smith 2005). Besides, the selection of insect biotypes on previously resistant cultivars may also be attributed to improper insecticide application, lack of crop rotation, or improper management practices such as elimination of alternate (weed) hosts. Large-scale monoculture of same rice cultivars in several countries, as well as indiscriminate applications of insecticides for hopper control, leads to the evolution of hopper biotypes in Southeast Asia (Smith 2005). Planting of early Mayetiola destructor (Say)-resistant wheat cultivars over a wide geographical range may also contribute to the evolution of virulence (Smith 2005). Several non-crop cultivar factors have also been documented to play a likely role in the development of biotypes (Porter et al. 1997). Examples include non-crop host adaptation by S. graminum (Powers et al. 1989), large variations in S. graminum clonal diversity (Shufran et al. 1992; Shufran and Wilde 1994), and autumn sexual reproduction of the greenbug on cool season grasses, especially blue grass (Puterka et al. 1992). The greenbug summer populations on wheat die before sexual forms are produced, thereby eliminating the chances that individuals produced on summer crop plants result in biotypes (Smith 2005). This idea is well supported by the identification of a biotype on Western wheat grass (Anstead et al. 2003) with a unique virulence profile, thereby establishing the fact that noncultivated grasses are closely involved in the development of what have become recognized as S. graminum biotypes.
Michel et al. (2011) presented a comprehensive overview of the genetic basis for biotype development in homopterans, particularly aphids. In ecological levels, the natural enemies, the symbionts, the selection capacity to the host plants, and the resistance to insecticides are the possible reasons for the evolution of aphid host biotypes. Biotypes have been known to be intrinsically associated with host plant resistance, particularly many species within the family Aphididae (Smith 2005). Relationships between symbiotic bacteria and insects are well documented. Such intricate relationships are known to have a considerable effect on the host biology, can be obligatory or facultative for the host, and are known to be involved in host plant utilization, reproductive manipulation, nutrition, and ability to withstand environmental variations (Bourtzis and Miller 2006).
Many bacterial endosymbionts such as Buchnera, Hamiltonella, Rickettsia, Arsenophonus, Regiella, Serratia, etc. act as a source of essential amino acids to their carriers, the aphids, and may, therefore, be involved in aphid defense as well as biotype development (Ruggle and Gutierrez 1995; Birkle and Douglas 1999; Moran and Wernegreen 2000; Wille and Hartman 2009; Oliver et al. 2010). These endosymbionts have been documented to be involved with different insect biotypes, presumably because of the diversity in the nutrients and amino acids afforded by different host plants (Simon et al. 2003a; Chiel et al. 2007). For instance, it has been indicated that virulence to lucerne (alfalfa) varieties is symbiont based (Ruggle and Gutierrez 1995). There are several cases depicting the close associations between insects and their endosymbionts. These symbionts have been found to play a very crucial role in development, reproduction nutrition, speciation, and defense against natural enemies of their host insects (Baumann 2005; Douglas 1998; Gregory et al. 2000; Oliver et al. 2003; Stouthamer et al. 1999). There exists a large diversity of the bacterial microbes harbored by the brown planthopper, and the results of Tang et al. (2010) provide enough evidence of symbiotic relationships between specific bacterial microbes and biotypes of N. lugens. There are also evidences that some biotypes of N. lugens differ in DNA polymorphisms, isozymes, and small morphological features (Claridge et al. 1984; Latif et al. 2009; Shufran and Whalon 1995). However, the exact mechanism of conferring virulence in N. lugens biotypes is still not clear.
Studies conducted by Chiel et al. (2007) have revealed an interesting fact related to Bemisia tabaci B biotype and the bacteria it carries in Israel: all B biotype B. tabaci hosts Hamiltonella, but they have not been found to carry either Wolbachia or Arsenophonus. On the contrary, Arsenophonus and Wolbachia have frequent association with the Q biotype, with the latter having no association with Hamiltonella in Israel. Interestingly, B. tabaci Q biotype populations from other regions of the world showed infection with Hamiltonella and Cardinium, while only the A biotype showed infection with Fritschea in the United States (Baumann 2005). Rickettsia is the only symbiont that is commonly detected in both biotypes of B. tabaci and is also the only bacterium found in very high concentration throughout the insect body (Gottlieb et al. 2006, 2008), and being intracellular, this bacterium affects some biological aspects of the insect. Correlations between the symbiont profiles and biotypes of Russian wheat aphid, Diuraphis noxia (Kurdjumov) and S. graminum, have recently been revealed (Pinheiro et al. 2014; Anathakrishnan et al. 2014), but their genetic underpinnings have not yet been explored.
Secondly, since most of the sap sucking insects feed exclusively on plant phloem, there is an induction of consistent responses within plants through interactions with aphid saliva (Mutti et al. 2008). Such responses highlight the role of the salivary glands in insect biotype adaptation (Michel et al. 2011). Specific factors found in aphid saliva play an immensely important role in biotype adaptation as has been implicated in earlier research. For instance, resistance breakdown in sorghum is a result of higher activity of pectin methylase in saliva of S. graminum biotypes (Dreyer and Campbell 1984). Furthermore, certain saliva-related proteins may be involved in D. noxia biotype adaptation against wheat (Lapitan et al. 2007).
Thirdly, the complex life cycle is the biggest factor which aids the aphids to develop into new biotypes (Michel et al. 2011). Most species are holocyclic (alternating between primary and secondary hosts) and heteroecious (undergoing sexual and asexual reproduction), although variations and phenotypic plasticity are common (Moran 1992; Blackman and Eastop 2000, 2007). Since the generation time is very short in aphids, any modification or adaptation that evolves during the asexual stage can quickly become common. However, very little information is available about the genetic mechanisms of biotype evolution in aphids, despite the frequency at which biotypes evolve. Only in a few studies (Dreyer and Campbell 1984; Lapitan et al. 2007) have mechanisms been explained, but the gene(s) involved remain elusive.
Based on analysis of these specific insect-plant interactions, future plant resistance programs should concentrate on the use of the most effective resistance genes irrespective of what effect these genes may have on insect population genetics. The evolution of insect biotypes with a high reproductive potential should be anticipated when developing plant resistance to insect pests. The high reproductive potential of aphids coupled with parthenogenetic mode of reproduction and clonal diversity suggests that new biotypes will continue to evolve in the future (Smith 2005). In a few cases, the development of insect virulence has also been promoted by the higher expression of genes controlling antibiosis.
13.4 Biotechnological Tools for Biotype Identification/Analysis
Morphology has been used historically to separate species when identifying and describing insect taxa. Among the many groups of insects, however, morphological characters can vary with respect to environmental factors within a single species or be as convergent and cryptic among closely related species as to be of limited usefulness (Calvert et al. 2005). The term “biotype” usually designates an intra-specific group of organisms that are not morphologically distinguishable but differ by a biological function (Eastop 1973). Although host plant response remains the main criterion for identification of insect biotypes, but it is often laborious and time-consuming. Therefore, other methods based on morphological characters (Starks and Burton 1977), isozymes (Abid et al. 1989), and mitochondrial DNA (Shufran et al. 2000) have been utilized to assess genetic relationships among biotypes or to develop alternative identification procedures. In such cases, studies of their biology and molecular profiles become essential to defining species and characterizing populations (Calvert et al. 2005). At the molecular level, protein and DNA polymorphisms can be combined with studies of biological characteristics by using experimental or technological approaches: electrophoresis of allozymes, analysis of randomly amplified polymorphic DNAs (RAPDs), and nucleic acid sequence comparisons of nuclear or mitochondrial DNA markers (Calvert et al. 2005). However, it has not been possible to fully distinguish all insect biotypes using these methods.
For solving routine taxonomic and ecological problems regarding biotype or cryptic status of insect, various molecular tools have been utilized. Various allozymes, RFLP, RAPD, microsatellite, and mtDNA-based markers have been used for differentiating biotypes and sympatric species (Laroche et al. 1996; Hoy et al. 2000; Hufbauer et al. 2004). For exploring the genetic differences between insect biotypes, DNA-based techniques are increasingly being applied (Birkle and Douglas 1999) and are particularly valuable for the study of aphids (Hales et al. 1997). For instance, consistent differences between greenbug, S. graminum, biotypes that use different sorghum cultivars have been revealed using restriction analyses of mitochondrial DNA (mtDNA) (Powers et al. 1989) and between alfalfa aphid, Therioaphis trifolii (Buckton), biotypes using different legume crops (Sunnucks et al. 1997b). Consistent differences in microsatellite profiles have also been unraveled in the English grain aphid, Sitobion avenae (Fabricius), collected from wheat and cocksfoot (De Barro et al. 1995; Sunnucks et al. 1997a). Furthermore, significant variations in ribosomal spacers have been detected for the large raspberry aphid, Amphorophora idaei (Born), infesting various raspberry cultivars (Birch et al. 1994).
Random amplified polymorphic DNA-polymerase chain reaction (RAPD-PCR) has been successfully applied to reveal distinctive patterns among some greenbug biotypes (Black et al. 1992; Aikhionbare et al. 1998; Lopes-da-Silva et al. 2004). Using several types of midge DNA analyses, biotypes of the Asian rice gall midge, Orseolia oryzae (Wood-Mason), have been identified. Based on DNA polymorphisms related to amplification by RAPD primers, Behura et al. (1999) developed a PCR-based assay to differentiate between the Indian Orseolia biotypes. The SCAR (sequence-characterized amplified region) primers could differentially amplify the DNA of the six Indian biotypes, as well as that of the African gall midge, O. oryzivora (Harris and Gagne). The AFLP (amplified fragment length polymorphism) cluster analyses have been utilized to closely evaluate the composition of the Chinese and Indian O. oryzae groups (Katiyar et al. 2000).
Molecular techniques and DNA-based markers have led to tagging of several plant resistance genes and mapping of virulence genes and their subsequent cloning for insect biotypes. The SCAR method has been utilized for the identification of the biotype of O. oryzae (Behura et al. 1999) and Anopheles quadriannulatus (Fettene and Temu 2003). It has been observed that the insecticide applications affect the balance of both B and Q biotypes of B. tabaci that have different inherent levels of resistance to insecticides (Horowitz et al. 2005). Therefore, to select a suitable strategy to manage different biotypes of B. tabaci, SCARs can play an integral role in the rapid identification of biotypes. So far, B. tabaci cryptic species have been distinguished using a variety of genetic markers (Gawel and Bartlett 1993; Wool et al. 1993; Cervera et al. 2000; De Barro 2005) with the recent focus shifting toward sequencing a portion of the mitochondrial cytochrome oxidase I (mt-COI) gene (Boykin et al. 2007; Dinsdale et al. 2010; De Barro et al. 2011). However, for species identification, the conventional molecular-based methods, such as polymerase chain reaction, require expertise in laboratory techniques and access to expensive laboratory equipment (e.g., thermocyclers), besides being time-consuming as well.
Among the molecular markers, RAPD-PCR is most commonly used to discriminate the B. tabaci biotypes. For successfully distinguishing B. tabaci B biotype and non-B biotypes, De Barro and Driver (1997) screened four random primers. For differentiating the B, Q, and newly found T biotypes distributed in Italy, Simon et al. (2003a) used methods such as RAPD-PCR, esterase electrophoresis spectra, and silverleaf symptom. The sequence analysis of DNA fragments in specific regions such as the mitochondrial cytochrome oxidase I (COI) and ribosome internal transcribed spacer 1 (ITS1) can also be used to distinguish B. tabaci biotypes (Frohlich et al. 1999; De Barro et al. 2000). For identifying insect species and biotypes, several studies on specific primer set applications are gradually becoming common (Behura et al. 1999; Kethidi et al. 2003; Wang et al. 2004a). Wang et al. (2004a) developed the specific primer set, Baf/Bar, for B. tabaci biotype B, through which it was indicated that B. tabaci biotype B existed in Taiwan. However, upon mitochondrial COI sequence analysis, it was revealed that in Taiwan, B. tabaci also included the An and Nauru biotypes, besides the biotype B (Hsieh et al. 2006). In order to rapidly amplify a target DNA sequence using four to six specially designed primers, Notomi et al. (2000) and Nagamine et al. (2002) used the loop-mediated isothermal amplification of DNA (LAMP) as one of the methods. Recently, LAMP assays have been used successfully to distinguish between Middle East-Asia Minor 1 (MEAM1) and Mediterranean (MED) regions’ cryptic species of B. tabaci by two research groups (Adachi et al. 2010; Hsieh et al. 2012).
13.5 Management of Insect Biotypes
Host plant resistance is a cost-effective and sustainable approach to reduce insect damage and increase yield potential of plant varieties. Evolution of biotypes among insect populations is a potential threat to the durability of host plant resistance. Biotypes have long-lasting implications for pest management as the failure to identify distinct populations can have serious consequences (Bush and Hoy 1983). Large-scale cultivation of resistant cultivars exerts a constant selection pressure on insect populations, paving the way for the evolution of new biotypes (Kindler and Hays 1999; Naber et al. 2000). The successful utilization of certain insect-resistant varieties may be seriously constrained in time and space by the occurrence of new biotypes of the target pest. Hence, continuous and systematic evaluation of new germplasm must be explored to identify new genes for resistance (Sharma 2009). For conferring resistance to new insect biotypes, some of the known resistance genes could be pyramided and tested for efficacy. The pyramided major genes or quantitative trait loci (QTLs) may provide stable resistance and improve yield potential of cultivars. In such situations, one has to adopt the strategy of breeding crop cultivars for polygenic resistance or constantly search for new resistance genes followed by their introgression into high-yielding cultivars (Jena and Kim 2010). To delay or overcome the evolution of insect biotypes, cultivars with diverse mechanisms of resistance having stable expression against the prevalent insect biotypes should be utilized in a breeding program (Sharma 2009).
Still, much research is needed to determine the influence of emerging insect biotypes on resistant crop cultivars and to determine the relative frequencies and distributions of biotypes. Several methods have been suggested to maximize the use of host plant resistance to brown planthopper (and in general homopteran pests) in pest management. Sequential release of varieties with diverse resistance traits, the use of multilines with vertical resistance, and polygenic resistance with moderate resistance (horizontal resistance) received wide acceptability (Khush 1979;Panda and Khush 1995). However, these methods failed in practical applications, mainly due to the difficulties in developing a spectrum of activities that could satisfy the above criteria. In order to prevent the evolution of new biotypes in the field, gene pyramiding of known resistance genes in commercial rice varieties seemed to be insufficient unless the resistance-breaking mechanism of BPH to each resistance gene was considered (Horgan 2009; Chen 2009). Many doubts have arisen about the possibilities of developing high-yielding crop cultivars with the higher level of resistance to insect pests. This assumption is based on the fact that the energy and other resources that the plants divert for resistance would not be available for the growth and reproduction of the plant. For instance, van Emden (1991) concluded that partial host plant resistance was more important than the high level of resistance to insects.
Michel et al. (2011) suggested that the durability of host plant resistance can be preserved along with the management of evolution of insect virulence by introducing diverse soybean aphid-resistant genes and varieties. In addition, the possibility of gene pyramiding and geographically varying Rag (resistant to Aphis glycines Matsumura) gene deployment may extend the life of host plant resistance (Porter et al. 2000; Smith 2005). The integration of all the tactics will be necessary to extend the durability of host plant resistance in soybean and slow the evolution of soybean aphid biotypes.
For biotype management, a thorough knowledge of the insect systematics and biology is a prerequisite. Such kind of information is absolutely required for both the establishment of management measures in the most severely affected areas and the prediction of risks associated with the insect pests. In order to characterize biotypes to map their occurrence, a comprehensive approach utilizing molecular tools and detailed morphological studies is absolutely necessary (Navia et al. 2013). This can be possible through the concerted efforts of researchers across regions, countries, and continents. A prior knowledge of the identity of the biotype in each geographical region would be very useful in integrated pest management practices. The use of biotype-specific SCAR primers in a single PCR with an unknown genomic DNA sample of a given biotype would enable entomologists and plant breeders to identify the biotype prevalent in that region in the shortest possible time and to avoid deploying any crop variety known to be susceptible to that biotype (Behura et al. 1999). Area-wide rigorous monitoring and surveillance programs should be initiated to detect and map the occurrence of insect biotypes. Improving pest prediction capabilities, cataloging the range of important host plant species, and establishing varietal impact under insect pressure are of utmost importance. In the newly affected areas, continuous screening of resistance of a commercial crop cultivar to this biotype should be taken on a priority basis.
Keeping into consideration the risks of biotype evolution, a single strategy of deployment of insect-resistant genotypes alone may be a risky proposition. For broadening the genetic base of resistance and enhancing its durability against different insect biotypes, the traditional breeding efforts need to be blended with alternative breeding strategies. For successful gene pyramiding, there is a need to explore new sources of resistance constantly, which can further be characterized and mapped using genetic markers (Dossett and Kempler 2012). Durable resistance will only come from combining multiple resistance sources, until strong sources of horizontal resistance are identified. For new sources to be efficiently combined to maintain their durability and prevent future breakdown of resistance, mapping studies will be necessary to identify markers and linkages for insect-resistant genes (Dossett and Kempler 2012). A comprehensive knowledge about the biology of resistance mechanisms will be imperative for judging how durable novel sources of resistance may be and how effective they will be at the objective of delaying the evolution of new insect biotypes. The risk of emergence of new biotypes could be reduced to a much greater extent by adopting well-planned monitoring strategy coupled with integrated biotype management practices that provide multiple selective pressures (Raffa 1989).
To avoid the selection of arthropod biotypes, an amalgamation of plant breeding and pest management practices is vital (Smith 2005). It has been observed that cultivars possessing tolerance mechanism against insects exert minimum selection pressure on pest populations to evolve virulence (Heinrichs 1986). On the contrary, those cultivars exhibiting antibiosis, where high levels of chemical and physical factors have resulted in selection for virulent individuals, are comparatively unstable than tolerant cultivars. Therefore, the utilization of a cultivar possessing moderate levels of antibiosis or with a blend of antibiosis, antixenosis, and tolerance could serve as an effective management practice (Smith 2005). This is further supported by the results of Basky (2003) which provide evidence that virulent D. noxia populations are unable to overcome tolerance but possibly overcome the antibiosis component of several different wheat resistance genes.
Development and adoption of improved arthropod pest management techniques can result in enhanced arthropod natural enemy fauna and delay the biotype development as has happened in the case of N. lugens (Smith 2005). To monitor the onset of new biotypes, surveillance and sampling programs should be initiated in different geographical locations and from diverse host plants. The method of differentiation of arthropod biotypes (host differentials or PCR-based assays) should be accurate and should give the most efficient differentiation of biotypes in an insect population. As per Smith (2005), a sound pest management approach aiming at slowing down the development of insect biotypes should focus on planting different genotypes with resistance genes to specific biotypes in different geographical areas. Smith (2005) and van Emden (2007) opined that the use of insect-resistant crop plants with horizontal resistance and moderate levels of resistance that blend well with other management strategies should be the key for all breeding programs focused on delaying the onset of insect biotypes. There is a dire need to identify new and diverse insect-resistant genes that express tolerance resistance or more moderate levels of antibiosis resistance in pest management.
13.6 Conclusions
Host plant resistance is an integral component of integrated pest management as well as varietal improvement programs. Continuous planting of crop cultivars with single major genes (R) may predispose them to certain virulent insect biotypes, thus limiting their sustainability and performance. Therefore, efforts should be oriented toward broadening the genetic base of resistance, both monogenic and polygenic. As biotype shifts may occur, rendering previously efficient genes, susceptible to the new biotypes, agricultural entomologists should undertake regular and systematic arthropod biotype surveillance programs that can help the plant breeders in evolving insect-resistant cultivars. Inability to recognize their existence in nature can have serious consequences in pest management programs (Diehl and Bush 1984). There are hundreds of insect-resistant genes deployed in improved cultivars globally, but the continual evolution of virulent biotypes dictates the need for the identification of new sources of resistance and for MAS systems to identify and track these genes. The refinement and increased use of MAS techniques and MAS centers should be encouraged to accelerate the rate and accuracy of breeding crop plants for insect resistance. From this increased understanding, there should emerge strategies to better manage these economically damaging pests in a sustainable manner.
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Taggar, G.K., Arora, R. (2017). Insect Biotypes and Host Plant Resistance. In: Arora, R., Sandhu, S. (eds) Breeding Insect Resistant Crops for Sustainable Agriculture. Springer, Singapore. https://doi.org/10.1007/978-981-10-6056-4_13
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