Abstract
More than a quarter of a century has passed since the publication of Zuckerkandl and Pauling’s (1965) seminal article on the evolutionary implications of macromolecular sequence data. Two fundamental suggestions were made in that article: first, Zuckerkandl and Pauling pointed out that molecular change (nucleotide or amino acid substitutions) might occur at a rate that is proportional to clock time (the molecular clock hypothesis); and second, they noted that the topology of evolutionary branchings (phylogenies) could be deduced from the pattern of molecular change. These two related suggestions form the theoretical underpinnings of the science of molecular evolution.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
Similar content being viewed by others
References
Clegg, M.T., Learn, G.H., and Golenberg, E.M. (1990) Molecular evolution of chloroplast DNA. In: Evolution at the Molecular Level (eds. R.K. Selander, A.G. Clark, and T.S. Whittam), Sinauer Associates, Sunderland, MA.
Church, G.M., and Gilbert, W. (1984) Genomic sequencing. Proc. Natl. Acad. Sci. USA 81, 1991–1995.
Cronquist, A. (1981) An Integrated System of Classification of Flowering Plants. Columbia University Press, New York.
Doebley, J., Durbin, M.L., Golenberg, E.M., Clegg, M.T., and Ma, D.P. (1990) Evolutionary analysis of the large subunit of carboxylase (rbcL) nucleotide sequence among the grasses (Gramineae). Evolution 44, 1097–1108.
Downie, S.R., Olmstead, R.G., Zurawski, G., Soltis, D.E., Soltis, P.S., Watson, J.C., and Palmer, J.D. (1991) Six independent losses of the chloroplast DNA rpl2 intron in dicotyledons: molecular and phylogenetic implications. Evolution, in press.
Felsenstein, J. (1978) Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27, 401–410.
Felsenstein, J. (1988) Phylogenies from molecular sequences: inference and reliability. Ann. Rev. Genet. 22, 521-565.
Fitch, W.M., and Margoliash, E. (1967) Construction of phylogenetic trees. Science 155, 279–284.
Giannasi, D.E., and Niklas, K.J. (1977) Flavonoid and other chemical constituents of fossil Miocene Celtis and Ulmus (Succor Creek Flora). Science 191, 765–767.
Giannasi, D.E., Zurawski, G., Learn, G.H., and Clegg, M.T.. (1992) Evolutionary relationships of the Caryophyllidae based on comparative rbcL sequences. Syst. Bot., in press.
Golenberg, E.M., Giannasi, D.E., Clegg, M.T., Smiley, C.J., Durbin, M., Henderson, D., and Zurawski, G. (1990) Chloroplast DNA sequence from a Miocene Magnolia species. Nature 344, 656–658.
Hiratsuka, J., Shimada, H., Whittier, R., Ishibashi, T., Sakamoto, M., Mori, M., Kondo, C., Honji, Y., Sun, C.-R., Meng, B.-Y., Li, Y.-Q., Kano, A., Nishizawa, Y., Hirai, A., Shinozaki, K., and Sugiura, M. (1989) The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Mol. Gen. Genet. 217, 185–194.
Kimura, M. (1968) Evolutionary rate at the molecular level. Nature 217, 624–626.
Li, W.-H., Luo, C.-C., and Wu, C.-I. (1985) Evolution of DNA sequences. In: Molecular Evolutionary Genetics (ed. R.J. MacIntyre), Plenum Press, New York, pp. 1–94.
Ohyama, K., Fukuzawa, H., Kohchi, T., Shirai, H., Sano, T., Sano, S., Umesono, K., Shiki, Y., Takeuchi, M., Chang, Z., Aota, S., Inokuchi, H., and Ozeki, H. (1986) Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322, 572–574.
Ritland, K., and Clegg, M.T. (1987) Evolutionary analysis of plant DNA sequences. Am. Nat. 130, S74–S100.
Rodman, J.E., Oliver, M.K., Nakamura, R.R., McClammer, J.U., Jr., and Bledsoe, A.H. (1984) A taxonomic analysis and revised classification of Centrospermae. Syst. Bot. 9, 297–323.
Sarich, V.M., and Wilson, A.C. (1967) Immunological time scale for the hominid evolution. Science 150, 1200–1203.
Shinozaki, K., Ohme, M., Tanaka, M., Wakasugi, T., Haysida, N., Matsubayashi, T., Zaita, N., Chungwongse, J., Obokata, J., Yamaguchi-Shinozaki, K., Ohto, C., Torazawa, K., Meng, B.Y., Sugita, M., Deno, H., Kamogashira, T., Yamada, K., Kusuda, J., Takaiwa, F., Kata, A., Tohdoh, N., Shimada, H., and Sugiura, M. (1986) The complete nucleotide sequence of the tobacco chloroplast genome. Plant Mol. Biol. Rep. 4, 110–147.
Soltis, D.E., Soltis, P.S., Clegg, M.T., and Durbin, M.L. (1990) rbcL sequence divergence in the Saxifragaceae sensu lato. Proc. Natl. Acad. Sci. USA 87, 4640–4644.
Wilson, M.A., Gaut, B., and Clegg, M.T. (1990) Chloroplast DNA evolves slowly in the palm family (Arecaceae). Mol. Biol. Evol. 7, 303–314.
Wolfe, K.H., and Sharp, P.M. (1988) Identification of functional open reading frames in chloroplast genomes. Gene 66, 215–222.
Wolfe, K.H., Li, W.-H., and Sharp, P.M. (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc. Natl. Acad. Sci. USA 84, 9054–9058.
Wolfe, K.H., Sharp, P.M., and Li, W.-H. (1989) Rates of synonymous substitution in plant nuclear genes. J. Mol. Evol. 29, 208–211.
Zuckerkandl, E., and Pauling, L. (1965) Evolutionary divergence and convergence in proteins. In: Evolving Genes and Proteins, (eds. V. Bryson and H.J. Vogel), Academic Press, New York.
Zurawski, G., and Clegg, M.T. (1984) The barley chloroplast DNA atpBE, trnM2, and trnv1 loci. Nucl. Acids Res. 12, 2549–2559.
Zurawski, G., and Clegg, M.T. (1987) Evolution of higher-plant chloroplast DNA-encoded genes: implications for structure-function and phylogenetic studies. Ann. Rev. Plant Physiol. 38, 391–418.
Zurawski, G., Clegg, M.T., and Brown, A.H.D. (1984) The nature of nucleotide sequence divergence between barley and maize chloroplast DNA. Genetics 106, 735–749.
Editor information
Rights and permissions
Copyright information
© 1992 Springer Science+Business Media Dordrecht
About this chapter
Cite this chapter
Clegg, M.T., Zurawski, G. (1992). Chloroplast DNA and the Study of Plant Phylogeny: Present Status and Future Prospects. In: Soltis, P.S., Soltis, D.E., Doyle, J.J. (eds) Molecular Systematics of Plants. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-3276-7_1
Download citation
DOI: https://doi.org/10.1007/978-1-4615-3276-7_1
Publisher Name: Springer, Boston, MA
Print ISBN: 978-0-412-02241-8
Online ISBN: 978-1-4615-3276-7
eBook Packages: Springer Book Archive