Abstract
In the first part of this chapter, we summarize the various pharmacophore models for σ1 receptor ligands. Common to all of them is a basic amine flanked by two hydrophobic regions, representing the pharmacophoric elements. The development of computer-based models like the 3D homology model is described as well as the first crystal structure of the σ1 receptor. The second part focuses on the synthesis and biological properties of different σ1 receptor ligands, identified as 1-9. Monocyclic piperazines 1 and bicyclic piperazines 2 and 3 were developed as cytotoxic compounds, thus the IC50 values of cell growth and survival inhibition studies are given for all derivatives. The mechanism of cell survival inhibition, induction of time-dependent apoptosis, of compound ent-2a is discussed. Experimentally determined σ1 affinity shows good correlation with the results from molecular dynamics simulations based on a 3D homology model. Spirocyclic compounds 4 and 5 represent well-established σ1 receptor ligands. The homologous fluoroalkyl derivatives 4 have favorable pharmacological properties for use as fluorinated PET tracers. The (S)-configured fluoroethyl substituted compound (S)-4b is under investigation as PET tracer for imaging of σ1 receptors in the brain of patients affected by major depression. 1,3-Dioxanes 6c and 6d display a very potent σ1 antagonist profile and the racemic 1,3-dioxane 6c has high anti-allodynic activity at low doses. The arylpropenylamines 7 are very potent σ1 receptor ligands with high σ1/σ2 selectivity. The top compound 7g acts as an agonist as defined by its ability to potentiate neurite outgrowth at low concentrations. Among the morpholinoethoxypyrazoles 8, 8c (known as S1RA) reveals the most promising pharmacokinetic and physicochemical properties. Due to its good safety profile, 8c is currently being investigated in a phase II clinical trial for the treatment of neuropathic pain. The most potent ligand 9e of 3,4-dihydro-2(1H)-quinolones 9 shows promising anti-nociceptive activity in the formalin test.
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Keywords
- Pharmacological data
- Structure (σ1) affinity relationships
- Synthesis
- σ1 Receptor ligands
- σ1 Receptor pharmacophore models
1 Introduction
The sigma-1 (σ1) receptor is a membrane-bound protein distributed in the central nervous system and in peripheral organs like heart, kidney, and liver (Weissman et al. 1988; Samovilova et al. 1988; Ela et al. 1994). The σ1 receptor is mainly localized at the endoplasmic reticulum and the mitochondria-associated membranes. Ruoho et al. have shown that the σ1 receptor consists of two transmembrane regions connected by a loop. Both C- and N-terminus are located extracellularly or in the ER lumen (Chu and Ruoho 2016). Two additional hydrophobic regions of the σ1 receptor were identified by Fontanilla et al. named steroid binding domain-like regions (SBDL I and II). With the help of N-substituted photoaffinity labels it was shown that the SBDL I overlaps with one of the two transmembrane regions of the σ1 receptor forming the ligand-binding domain together with the SBDL II (Ruoho et al. 2012). σ1 Receptors were shown to take part in the regulation of ion channels (e.g., K+ and Ca2+) and in the modulation of neurotransmitter systems (Lupardus et al. 2000; Hong and Werling 2000; Hayashi and Su 2007). In the brain, the σ1 receptor is particularly well expressed in areas associated with memory and emotion (Mash and Zabetian 1992). Steroids like progesterone (Su et al. 1988; Schwarz et al. 1989) and N,N-dimethyltryptamine (Fontanilla et al. 2009) were previously discussed to be endogenous ligands but their σ1 receptor binding affinities are low compared with those of sphingosines showing high affinity in the low-nanomolar range (Ruoho et al. 2012). Since many centrally active drugs show high σ1 affinity, σ1 receptors represent promising targets for the research and development of drugs to treat several neurological or neuropsychiatric disorders like depression, psychosis, and cocaine abuse (Hascoet et al. 1995; Matsumoto et al. 2001; Sharkey et al. 1988; Bermack and Debonnel 2001; Ishikawa et al. 2007; Skuza and Rogoz 2006). The fact that many human cancer cell lines show up-regulated levels of σ1 receptors brought them into focus for the development of new antitumor drugs and cancer diagnostics (Hashimoto and Ishiwata 2006). Based on various studies, Chen and Pasternak postulated that the σ1 receptor functions as an endogenous anti-opioid receptor system (Chien and Pasternak 1993). By investigation of different σ1 receptor ligands in animal models it was shown that σ1 agonists inhibit morphine-induced analgesia whereas σ1 antagonists potentiate opioid induced analgesia (Chien and Pasternak 1994, 1995). The fact that σ1 knockout mice show reduced pain response in the formalin test but not hypersensitivity after treatment with capsaicin lead to interest in σ1 receptors as a target in the treatment of neuropathic pain (Entrena et al. 2009).
For the development of new potent σ1 receptor ligands with high affinity several pharmacophore models have been developed and optimized. Herein the pharmacophore models reported so far are summarized and compared with respect to existing ligands.
2 Pharmacophore Models
In 1994, Glennon et al. reported a two-dimensional pharmacophore model based on deconstruction–reconstruction analysis of different flexible σ1 receptor ligands. In this model, two hydrophobic regions flanking a basic amine represent the pharmacophoric elements required for high σ1 affinity. A distance of 6–10 Å between the amine moiety and the primary hydrophobic region and of 2.5–3.9 Å between the amino group and the secondary hydrophobic region provides optimal binding conditions. The amine could be of primary, secondary, or tertiary nature. In case of a tertiary amine, only small substituents are allowed, whereas the amine could also be part of a ring system (e.g., piperazine ring). The primary hydrophobic region tolerates sterically demanding residues whereas the secondary region favors smaller substituents like a three-carbon chain. As the two hydrophobic binding pockets of the σ1 receptor tolerate bulky groups, the size of substituents can vary slightly without decreasing binding affinity (Fig. 1) (Glennon et al. 1994; Glennon 2005).
Laggner et al. presented in 2005 the first computer-aided three-dimensional pharmacophore model (Fig. 2) based on 23 structurally very different σ1 ligands. The pharmacophoric elements consist of a positive ionizable group like an amine and four hydrophobic features. The calculated distances between the pharmacophoric elements are in good agreement with the results obtained by Glennon et al. (1994).
In 2009, Zampieri et al. designed another computer-based model containing five pharmacophoric elements (Fig. 3) (Zampieri et al. 2009). The model included three hydrophobic areas in total (depicted in blue and pink), whereby two of them should have aromatic character (blue). A basic center (red) is located at a distance of 7.01 and 8.50 Å from the aromatic moieties and at a distance of 3.58 Å from the further hydrophobic elements. These distances are comparable to those postulated in the models of Glennon and Laggner. Additionally, the Zampieri model established an H-bond acceptor function, which was already defined in a pharmacophore model by Gilligan et al. This model was published in the early 1990s and did not differentiate between σ1 and σ2 ligands (Gilligan et al. 1992).
In 2011, Laurini et al. published the first computer-based 3-dimensional (3D) homology model of the σ1 receptor. For the identification of a reliable ligand-binding domain, results of docking studies, mutagenesis studies, structure–affinity-relationship studies, and pharmacophore models were combined. The validation of the homology model was implemented by docking studies of well-known σ1 ligands at the postulated binding site of the receptor, calculation of free binding energy, and comparison with the experimentally determined σ1 affinities of these ligands (Laurini et al. 2011, 2012).
Schmidt et al. have just published a crystal structure of the σ1 receptor for the first time (Schmidt et al. 2016). This structure was determined in complex with two different σ1 receptor ligands, PD144418 and 4-IBP. Contrary to the early findings of Fontanilla and Ruoho (Ruoho et al. 2012) as well as Aydar et al. only one transmembrane domain of the σ1 receptor was found in the crystal structure (Schmidt et al. 2016). This contradicts also the solution nuclear magnetic resonance (NMR) results of Ortega-Roldan et al. (2015) which closely match the findings of the 3D homology model of Laurini et al. (2011).
3 Ligands Introduction
In the literature, a great variety of σ1 receptor ligand classes are reported. These classes include piperazines 1, bicyclic compounds of type 2 and 3, spirocyclic compounds 4 and 5, 1,3-dioxanes 6, arylalkenylamines 7, morpholinoethoxypyrazoles 8, and 3,4-dihydro-2(1H)-quinolones 9 (Fig. 4). The synthesis and the pharmacological properties of these ligands are presented herein.
4 Homologous 2-Piperazinealkanols
Piperazines 1 with different hydroxyalkyl side chains represent well-established σ1 receptor ligands. A broad structure affinity relationship study was performed based on 2-hydroxyethyl substituted piperazines with high σ1 affinity and their larger and smaller homologs bearing hydroxypropyl or hydroxymethyl side chains. The cytotoxic activity against human cancer cell lines was tested by in vitro cell survival assays (Weber et al. 2014; Holl et al. 2012; Bedurftig and Wunsch 2004).
(S)-Serine, (S)-aspartic acid, and (S)-glutamic acid as enantiomerically pure amino acids of nature’s chiral pool were used for the synthesis of homologous piperazinealkanols 1a-g. The first reaction step includes the esterification of the particular amino acid. The dioxopiperazines 11 were prepared from the aminoesters 10 .HCl in a three-step reaction sequence consisting of reductive alkylation, chloroacetylation, and ring closure with different primary amines. Reduction with LiAlH4 led to the piperazinealkanols 1a-g (Scheme 1). Reduction of the ester moiety of 11d (n = 1, R = CO2CH3) followed by Wittig reaction of the resulting aldehyde with methyl(triphenylphosphoranylidene)acetate and subsequent reduction of the α,β-unsaturated ester led to the homologous hydroxybutyl piperazine 1g (Weber 2012).
The σ1 and σ2 affinity of hydroxyalkyl piperazines 1a-g was tested with tissue membrane preparations of animal origin (guinea pig brain, rat liver). Selected ligands (1d-g) were also assayed with membrane preparations bearing human σ1 receptors to evaluate ligand-binding affinity towards σ1 receptors from different species (Table 1).
For a high σ1 affinity, the length of hydroxyalkyl side chain and the size of the residues at both N-atoms are of particular importance. Short side chains like hydroxymethyl and hydroxyethyl are well-tolerated by the σ1 receptor leading to K i values in the range of 4–20 nM. The σ1 affinity of the hydroxypropyl piperazines is more than tenfold lower (e.g., 1f, K i = 275 nM). The extension of the side chain by another methylene moiety in case of hydroxybutyl piperazine 1f leads to an increased σ1 affinity, but the K i value of 52 nM remained higher than the K i value measured for hydroxymethyl and hydroxyethyl derivatives. In accordance with the pharmacophore model of Glennon postulating two hydrophobic regions, the N-methyl substituted piperazine 1c does not show high σ1 receptor affinity. The affinity increases by the introduction of a larger residue such as cyclohexylmethyl or p-methoxybenzyl group.
The hydroxyethyl derivatives show almost the same σ1 affinity as the hydroxymethyl derivatives, but show reduced σ2 affinity than hydroxyethyl piperazines. Regarding the σ1/σ2 selectivity, it becomes clear that the hydroxyethyl derivatives are more than tenfold selective for the σ1 over the σ2 receptor. The PMB-substituted compound 1b provides the best selectivity in this set of compounds with a σ2 affinity of >1,000 nM. As a result of further chain extension, the σ2 affinity increases leading to decreased selectivity (1f, K i (σ2) = 690 nM, 1g, K i (σ2) = 348 nM).
The σ1 affinity of 1d-g measured with membrane preparations from a human cancer cell line (RPMI 8226) is slightly reduced compared to the affinity measured with the guinea pig brain membrane preparations. Because the same trend was found for the reference compounds haloperidol and (+)-pentazocine it can be assumed that the results of both assays are well comparable.
As the enantiomer of 1d prepared in the same manner from (R)-aspartic acid shows the same σ1 affinity, it could be assumed that the stereochemistry has only negligible influence on σ1 receptor affinity and selectivity over the σ2 subtype (K i(σ1) = 1.9 nM, σ1/σ2 = 32).
The σ1 affinity obtained with human receptor preparations was supported by docking of the ligands in the putative binding site of the 3D σ1 receptor homology model. The calculated free binding energies are in good accordance with their recorded affinities towards the σ1 receptor. For the most potent human σ1 receptor ligand 1g (K i,exp. = 6.8 nM) a ΔGbind of −10.85 ± 0.36 kcal/mol was calculated which corresponds to an estimated K i(σ1)calcd value of 11.2 nM, consistent with the experimentally determined K i values (Weber et al. 2014).
The cell growth inhibition potential of piperazinealkanols 1c-g was tested in seven human tumor cell lines. The potent σ1 receptor ligand 1e inhibited the growth and survival of the bladder cancer cell line 5637, the small cell lung cancer cell line A427, and the multiple myeloma cell line RPMI 8226 in the low micromolar range. Even at high concentrations (20 μM) of 1e, a growth inhibition activity could not be found for the bladder cancer cell line RT4, the large cell lung cancer LCLC-103H, and the pancreas cancer cell line DAN-G. Additionally only low activity was found for the breast cancer cell line MCF-7, indicating a selective mechanism of growth and survival inhibition. Further investigation of the mechanism associated with the inhibitory activity of 1e was performed with RPMI 8226 cells and revealed an increase in the amount of early apoptotic cells after 48 h compared to the untreated control.
5 Bicyclic Piperazines
In order to investigate the influence of conformational restriction on σ1 receptor affinity bicyclic compounds of type 2 and 3 with diazabicycloalkan scaffold were designed by intramolecular connection of the 2-hydroxyalkyl side chain of piperazines 1 with C-5 of the piperazine ring. Propano- and butano-bridged homologs of 2 and 3 with diazabicyclo[3.2.2]nonane and diazabicyclo[4.2.2]decane scaffold were synthesized by an expansion of the ethano-bridge by one or two methylene moieties to elucidate the effect of bridge size on σ1 receptor affinity (Geiger et al. 2007; Weber et al. 2016; Sunnam 2010).
Homologous dioxopiperazines 11 (n = 1–3) with different substitution pattern of the N-atoms were used as starting material for the synthesis of bicyclic compounds 2 and 3 (Scheme 2). The dioxopiperazine 11 (n = 3) was synthesized from racemic-2-aminoadipic acid in the same manner as explained for dioxopiperazines 11 (n = 1,2) in Scheme 1. The mixed methyl silyl ketals 12 were obtained by Dieckmann analogous cyclization of 11. The Dieckmann analogous cyclization gave only low yields for the dioxopiperazines 11 (n = 1) with acetate side chain due to the rigidity of the resulting products 12 (n = 0). The (R)-configuration of the ketalic center of 12 was shown by X-ray crystal structure analysis (Holl et al. 2008). Hydrolysis and reduction of 12 led to the bicyclic alcohols 2 and 3. The enantiomers ent-2 and ent-3 were obtained starting with (R)-configured amino acids.
In piperazinealkanols 1 the hydroxyalkyl side chain can adopt several conformations and, moreover, the piperazine ring can adopt two conformations, leading to an axial or equatorial orientation of the side chain resulting in different distances between the pharmacophoric elements. In the bicyclic alcohols 2 and 3 the additional bridge over the piperazine ring reduces the flexibility of the ring system and its hydroxyalkyl side chain. As a result of conformational restriction, the pharmacophoric elements are fixed in a defined arrangement minimizing the loss of entropy during binding and thus increasing the overall free binding energy.
The σ1 and σ2 receptor affinity of the bicyclic alcohols 2 and 3 was determined with tissue membrane preparations from guinea pig brain (for σ1) and rat liver (for σ2). Compounds 2a-d and 3a-d were also tested against human σ1 receptors from multiple myeloma RPMI 8226 cell line membrane preparations (Geiger et al. 2007; Weber et al. 2016).
Almost all cyclohexylmethyl substituted compounds 2a-d and 3a-d show high σ1 receptor affinity with K i values in the low-nanomolar range. The only exceptions are ent-2a and 3c, both with a K i value of 23 nM. The extension of the ethano-bridge of 2a-c and 3a-c by a methylene moiety does not influence σ1 receptor affinity since the propane-bridged homologs 2d,e and 3d,e show approximately the same affinity. Only 2e and ent-2e show K i values in the three-digit nanomolar range (K i(σ1) = 125 and 118 nM). However, the introduction of a second methylene moiety leads to a salient decrease in σ1 receptor affinity, which implies that butano-bridged diazabicycloalkanols 2f and 3f are not tolerated by the σ1 receptor.
The stereochemistry has only low impact on σ1 receptor affinity since all four stereoisomers 2a, ent-2a, 3a, and ent-3a show the same σ1 receptor affinity. However, in case of PMB-substituted derivatives, 2e and ent-2e show lower σ1 receptor affinity than 3e and ent-3e.
The σ1 affinity determined with human σ1 receptor material is in good accordance with the σ1 affinity obtained with σ1 receptors from guinea pig brain.
Compared with the flexible hydroxyethyl piperazines 1b, 1d, and 1g, the corresponding ethano-bridged piperazines 2a-c and 3a-c reveal the same σ1 receptor affinity. However, the conformational restriction of the hydroxypropyl piperazines 1d led to increased σ1 receptor affinity of 2e and 3e. That is due to the higher flexibility of the hydroxypropyl piperazines 1d,e compared to their shorter hydroxyethyl homologs 1a-d. This is not valid for the butano-bridged piperazines 2f and 3f which display very low σ1 affinity, indicating that the bridge size is too bulky for the binding pocket. Obviously the size of the butano-bridge outweighed its positive effect of conformational restriction.
The σ1/σ2 selectivity varies from low preference for the σ1 receptor (2c: σ1/σ2 = 2) up to high selectivity for the σ1 receptor (3d: σ1/σ2 = 178). The PMB-substituted derivative ent-3e (σ1/σ2 = 227) showed the highest σ1/σ2 selectivity.
The bicyclic compounds 2a-d and 3a-d were docked into the binding site of the 3D homology model to determine the free binding energies. Figure 5 illustrates the identified interactions between the high affinity compound ent-3a (K i(σ1human) = 1.6 nM) and the human σ1 receptor (Weber et al. 2016).
The calculated free binding energies of all docked compounds are in good accordance with the experimentally determined receptor binding data. For ent-3a the calculated ΔGbind is −10.93 ± 0.34 kcal/mol corresponding to a calculated K i value of 9.7 nM. This K i value is in good agreement with the K i values recorded with σ1 receptors from guinea pig brain (K i = 5.7 nM) and from human RPMI 8226 cell (K i = 1.6 nM) membrane preparations.
The cell growth inhibition potential of compounds 2a-e and 3a-e was evaluated in five different cancer cell lines (Table 2). The naphthylmethyl substituted derivatives 2b and 3b similarly inhibited the growth and survival of all tested cell lines. The benzyl substituted derivatives 3a and ent-2a and the biphenylylmethyl substituted compound 2c show moderate inhibition of cell growth of the bladder cell line 5637. A clear correlation between σ1 receptor affinity and growth and survival inhibition could not be determined, however, we did discern a trend revealing sensitivity of A-427 cell line against all tested bicyclic compounds. With the exception of 2b and 3b, growth and survival of the other cell lines were not inhibited at compound concentrations up to 10 or 20 μM.
The bridge size does not show additional influence on σ1 receptor affinity. The K i values of 2d and 3d are in the same range as the K i values of the ethano-bridged compounds 2a-c and 3a-c. Although IC50 values are not available for compounds 2e and 3e, cell growth of only 33–46 % could be detected for the A-427 cell line, whereas the growth of the other cell lines was not inhibited (Geiger et al. 2007).
Further experiments directed to elucidate the mechanism of cell growth inhibition showed that ent-2a induced apoptosis in A-427 cells in a time-dependent manner (Weber et al. 2016).
6 Spirocyclic σ1 Receptor Ligands
Spirocyclic compounds 4 represent high affinity σ1 receptor ligands with a favorable pharmacological profile for use as fluorinated PET tracers. The homologous fluoroalkyl derivatives 4a-d bind σ1 receptor with K i values in the low-nanomolar range and show high selectivity over the σ2 receptor. The (S)-configured fluoroethyl substituted compound (S)-4b is currently investigated as PET tracer for imaging of σ1 receptors in the CNS of patients suffering from major depression (Fischer et al. 2011; Wang et al. 2013; James et al. 2012). The spirocyclic σ1 receptor ligands 5 bearing an exocyclic amino moiety allow diverse modifications by the introduction of two N-substituents. Furthermore, the existence of cis/trans isomerism increases the diversity of this compound class (Rack et al. 2011).
6.1 Homologous Fluoroalkyl Derivatives
The homologous fluoroalkyl derivatives 4a-d were developed from the 2-benzofuran 15, a ligand with high σ1 receptor affinity (K i = 1.1 nM) and high selectivity over the σ2 receptor (K i = 1,280 nM) and over 60 other receptors and ion channels like the hERG K+-channel. To eliminate the metabolically unstable acetalic function and to open up the possibility to introduce a fluorine atom into the molecule, a fluoroalkyl residue was installed instead of the acetalic moiety.
The synthesis of fluoroalkyl derivatives 4a-d started with the acetalization of 2-bromobenzaldehyde 13 to yield the dimethyl acetal 14 (Scheme 3). Homologation of 13 with a Wittig reagent provided the α,β-unsaturated acetal 17. Halogen-metal-exchange of the acetals 14 and 17 with n-BuLi followed by addition of 1-benzylpiperidin-4-one and subsequent transacetalization afforded the spirocyclic 2-benzofurans 15 and 18. The 2-benzofuranes 15 and 18 served as key intermediates for the synthesis of alcohols 16. The alcohols were reacted with diethylaminosulfur trifluoride (DAST) to provide the homologous fluoroalkyl derivatives 4 (Maestrup et al. 2009, 2011; Grosse Maestrup 2010; Maier and Wunsch 2002a, b).
The σ1 and σ2 receptor affinity of the homologous fluoroalkyl derivatives 4 was determined with receptor material from guinea pig brain (σ1) and rat liver (σ2).
All four fluoroalkyl homologs 4a-d bind with very high affinity to the σ1 receptor (K i(σ1) = 0.59–1.4 nM) with high selectivity over the σ2 subtype (Table 3). The fluoroethyl derivative 4b, termed fluspidine, shows the most promising ligand-binding profile [K i (σ1) = 0.59 nM, K i (σ2) = 785 nM)].
All four compounds 4a-d were also synthesized in their [18F]-labeled form for the use as PET tracers. For radiosynthesis, the alcohols 14 were transformed into the corresponding tosylates. Nucleophilic substitution of the tosylates with K[18F]F complexed with the cryptand Kryptofix 2.2.2 led to the [18F] labeled spirocyclic σ1 receptor ligands [18F]4a-d with high radiochemical purity (>98%) and radiochemical yield (40–50%) with reaction times <30 min (Fischer et al. 2011; Maestrup et al. 2009; Maisonial et al. 2011, 2012). Because of the high target affinity and selectivity, [18F]4b was further evaluated in animal studies with female CD-1 mice. [18F]4b showed fast and sufficient brain uptake (3.9 and 4.7%ID/g) and high metabolic stability in vivo (>94% parent compound in plasma samples after 30 min, only one metabolite was found). Good concordance between expression of σ1 receptors and binding site occupancy with [18F]4b was found by ex vivo brain section imaging (Fischer et al. 2011). Due to the promising properties of the racemic compound [18F]4b, the enantiomers (R)- and (S)-[18F]4b were separated by chiral HPLC of the tosylate 13b (Holl et al. 2013). The σ1 receptor affinity was 0.57 nM for (R)-[18F]4b and 2.3 nM for (S)-[18F]4b. Thus, the (R)-enantiomer is the eutomer.
6.2 Spirocyclic Ligands with Exocyclic Amino Moiety
For the synthesis of spirocyclic ligands with exocyclic amino moiety, the dimethyl acetal 19 was reacted in a bromine lithium exchange to give an aryllithium intermediate. After addition to cyclohexane-1,4-dione followed by transacetalization under acidic conditions, reductive amination with benzylamine and NaBH(OAc)3 led to the diastereomeric benzylamines cis-5e and trans-5e (R = H, Scheme 4). In order to investigate the influence of the second N-substituent, the benzylamines 5e were transformed into different tertiary amines. Each isomer can adopt different conformations with axially or equatorially oriented amino substituents.
The σ1 and σ2 receptor affinity of spirocyclic ligands with exocyclic amino moiety 5 was determined with membrane preparations obtained from guinea pig brain (for σ1) and rat liver (for σ2) (Table 4).
The shift of the basic amino group to a position outside of the spirocyclic ring was envisaged to come closer to the required distances between the pharmacophoric elements (benzene ring and amino moiety) according to the models of Glennon and Laggner. The benzylpiperidin 15 (Fig. 6) shows high σ1 receptor affinity and high selectivity over the σ2 subtype and over other receptors and ion channels. It was found that small residues at the N-atom resulted in low σ1 affinity whereas a benzyl group turned out to be optimal. The important role of the N-benzyl moiety can be explained by the pharmacophore model of Glennon et al. The benzene ring of the annulated pyrane ring interacts with the primary hydrophobic region and the benzyl moiety of the N-atom interacts with the secondary hydrophobic region. However, the distance between the N-atom and the primary hydrophobic region was too small for both conformers with axially and equatorially oriented phenyl ring. Ideally, the distance should be 6–10 Å due to the pharmacophore model of Glennon et al. In case of 15 the distance was found to be 5.7 and 5.1 Å for the equatorial and axial conformer, respectively (Fig. 6). Therefore it was decided to extend the distance between the N-atom and the O-heterocycle-annulated benzene ring by exclusion of the N-atom from the piperidine ring, resulting in spirocyclic compounds 5 with exocyclic amino group. Another advantage of an exocyclic amino moiety is the possibility to install and to modify two different residues at the N-atom.
As a result of the shift of the basic group, the distances between the N-atom and the O-heterocycle-annulated benzene ring of cis-5a and trans-5a are in good concordance with the distances postulated by Glennon et al. However, the decrease in σ1 affinity (K i(σ1) = 24 and 43 nM) (Rack et al. 2011) provides an example of how receptor binding affinity does not strictly correspond with pharmacophore models. Other considerations like entropic factors should be noted. The introduction of the benzylamino moiety leads to an increased flexibility of the N-substituent.
The σ1 receptor affinity of 5 also depends on the second N-substituent. Only small groups are tolerated. For small methyl and ethyl groups, the K i values are 24 and 107 nM, respectively. Bulky residues like pentyl- or benzyl substituents lead to a salient decrease in σ1 binding affinity (K i(σ1) > 1,000 nM). Generally, cis-configured diastereomers show higher σ1 binding affinity than their trans-configured diastereomers.
7 1,3-Dioxanes
Racemic 1,3-dioxane 6c represents a very potent σ1 receptor antagonist (Utech et al. 2011). With these compounds σ1 binding affinity depends on the relative configuration of the substituents at the 2- and 4-position, size of the oxygen containing heterocycle, and length of the aminoalkyl side chain. Since the racemic compound 6c, consisting of a six-membered O-heterocycle combined with an aminoethyl side chain, was found to be a promising candidate as σ1 receptor ligand, the enantiomers were synthesized and their pharmacology evaluated.
For the synthesis of enantiomerically pure 1,3-dioxanes 6, the enantiomeric azidodiols (S)-22 and (R)-22 were prepared from diester 20 in high enantiomeric excess (Scheme 5). After silylation of 20 and subsequent reduction, the resulting diol 21 was converted into the azidodiols (S)-22 and (R)-22 following two different pathways using lipases as chiral catalysts. Stereoselective acetalization of (S)-22 and (R)-22 with benzaldehyde or acetophenone led to enantiomerically pure azido-1,3-dioxanes, which were subsequently reduced with H2 and Pd/C to obtain the primary amines 6a and 6b. Further functionalization of the amino moiety was performed by reductive monobenzylation with benzaldehyde and NaB(OAc)3 to yield the benzylamines 6c and 6d.
The σ1 and σ2 receptor affinity of 1,3-dioxanes 6 was determined with tissue membrane preparations from guinea pig brain (for σ1) and rat liver (for σ2). The 1,3-dioxanes 6 were also tested against the PCP binding site of the NMDA receptor using pig brain cortex membrane preparations (Table 5).
We found that both enantiomers of the primary amines 6a and 6b do not bind σ1 (K i(σ1) > 10,000 nM) in this assay. According to the pharmacophore model of Glennon et al. (Glennon 2005; Glennon et al. 1994) affinity for σ1 should increase by introducing an N-benzyl group as a second hydrophobic residue flanking the basic amino moiety as it is shown for the secondary amines 6c and 6d. In the case of benzylamines the orientation of the phenyl ring at the 1,3-dioxane ring has minimal influence on σ1 affinity as 6a and 6b show comparable K i values of 6.0 and 17 nM for the (4R)-configured enantiomers and 50 and 11 nM for the (4S)-configured enantiomers. Compound (S,R)-6c with equatorially oriented 2-phenyl moiety shows high σ1 affinity (K i(σ1) = 6.0 nM).
Regarding σ1/σ2 selectivity, we found that primary amines 6a and 6b do not bind σ1 and the benzyl amines 6c and 6d bind σ2 with low affinity (K i(σ2) > 200 nM).
Depending on the absolute configuration the primary amines 6b with axially oriented phenyl moiety reveal high affinity to the PCP binding site of the NMDA receptor with K i values of 46 nM ((R,R)-6b) but only 6,120 nM for (S,S)-6b, respectively. The equatorial orientation of the phenyl ring (6a) as well as the introduction of a benzyl group at the amino moiety (6c and 6d) led to complete loss of NMDA affinity (K i(NMDA) > 10,000 nM).
The benzyl substituted 1,3-dioxane (S,R)-6c represents the most potent candidate among the secondary amines with high σ1 affinity (K i(σ1) = 6.0 nM) and high selectivity over the σ2 subtype and the NMDA receptor.
In further studies performed with racemic 6c (K i(σ1) = 19 nM), promising results were obtained in a capsaicin-induced pain assay with mice. In these studies, even a very low dose of 0.25 mg/kg, rac-6c has high anti-allodynic activity (Utech et al. 2011).
8 Arylalkenylamines
Arylpropenylamines of type 7 show high σ1 binding affinity and high σ1/σ2 selectivity. The influence of the novel σ1 ligands on nerve growth factor (NGF)-induced neurite outgrowth was evaluated in the in vitro PC12 cell neurite sprouting assay.
Michael addition of cylic amines to unsaturated ketone 23 led to the β-aminoketones 24. Subsequent nucleophilic aryllithium addition followed by dehydration with HCl provided the arylalkenylamines 7, which were crystallized as HCl salts (E)-7a-f (Scheme 6). The racemic arylalkylamine 7g was obtained by catalytic hydrogenation of 7a.
The σ1 and σ2 receptor binding affinity of compounds 7a-g .HCl was tested using guinea pig brain (for σ1) and rat liver (for σ2) membrane preparations. Additionally, the selectivity towards the PCP binding site of the NMDA receptor and against μ- and κ-opioid receptors was determined (Table 6).
Piperidinyl substituted compounds 7a and 7b reveal high σ1 receptor affinity independent of the aromatic residue (K i(σ1) = 0.86 and 0.97 nM). Interestingly, naphthalen-2-yl- or biphenyl-4-yl residues appear to be important for high σ1 binding affinity of morpholinyl substituted compounds since only low σ1 affinity is found when a phenyl substituent is present as aromatic moiety (7f, K i(σ1) >1,000 nM). The tested compounds show high selectivity over the σ2 receptor subtype, opioid receptors, and NMDA receptors (the PCP binding site). High σ2 binding affinity was found only for 4-benzylpiperidinyl substituted derivatives 7c and 7d, with K i values of 18 and 16 nM, respectively. 7a represents the most potent and selective σ1 receptor ligand of this set of compounds (K i(σ1) = 0.86 nM, σ1/σ2 = 129). Therefore the corresponding arylalkylamine 7g was included in this study. Receptor binding studies revealed similar σ1 binding affinity (K i(σ1) = 0.70 nM) and selectivity (σ1/σ2 = 147) (Rossi et al. 2011).
clogP and clogD values were calculated for 7a-g. Their drug-like properties were confirmed according to Lipinski’s “rule of five.” With the exception of 7c (logD > 5) all compounds fulfill the “rule of five,” i.e., clogD <5, molecular weight < 500, H-bond acceptors <10, and H-bond donors <5.
In order to determine whether the top compounds 7a and 7g function as agonists or antagonists their influence on nerve growth factor (NGF)-induced neurite outgrowth in PC12 cells was evaluated. 7g potentiated the neurite outgrowth at lower concentrations, consistent with agonist activity. This effect was blocked by co-treatment with the σ1 receptor antagonist BD-1063, demonstrating the participation of σ1 receptors. In contrast, (E)-7a did not significantly increase neurite sprouting (Rossi et al. 2011).
9 Morpholinoethoxypyrazoles
Substituted 1-arylpyrazoles with a basic amino function represent a promising class of σ1 receptor antagonists. For high σ1 binding affinity, the distance between the basic amino moiety and the pyrazole ring is of major importance. In previous studies an ethylenoxy spacer and a morpholino residue as the N-component resulted in high σ1 affinity and excellent selectivity over the σ2 subtype.
For the synthesis of morpholinoethoxypyrazoles 8a-f, the 3-hydroxypyrazole 28 was prepared in a two-step reaction sequence starting from arylhydrazines 25. At first the terminal amino group of hydrazines 25 was protected by acetylation (Scheme 7). Reaction of 26 with β-ketoesters 27 led to the 3-hydroxypyrazoles 28 with high regioselectivity. Subsequent reaction with 4-(2-chloroethyl)morpholine provided the morpholinoethoxypyrazoles 8a-f (Diaz et al. 2012).
The σ1 and σ2 binding affinity of morpholinoethoxypyrazoles 8a-f was determined with human σ1 receptors (from transfected HEK-293 cell membrane preparations) and membrane preparations from guinea pig brain (for σ2).
Generally, the morpholinoethoxypyrazoles 8a-f show only very low affinity for the σ2 receptor. Affinity for σ1 depends on the substitution pattern of the pyrazole ring. Substitution at position 1 with aromatic residues (8b-f) produces high σ1 binding affinity. Non-aromatic residues (tert-butyl, 8a) produce a salient decrease in σ1 binding affinity (Table 7). Only small residues (e.g., CH3, H) are tolerated at 4- and 5-position of the pyrazole ring. In the naphthyl series even a methyl group in position 4 seems to be detrimental for high σ1 affinity (8d, K i(σ1) = 139 nM). The introduction of larger moieties in position 4 (e.g., 8f, C(=O)Me) produces a salient decrease in σ1 binding affinity (K i(σ1) = 741 nM). The 5-alkoxy regioisomer of the most promising ligand 8c (K i(σ1) = 17 nM) shows a complete loss of σ1 affinity (K i > 1,000 nM) (Diaz et al. 2012).
The high σ1 binding affinity of naphthylpyrazole 8c (also known as S1RA and E-52862) cannot be explained completely by the common pharmacophore models. The 2-[1-(2-naphthyl)pyrazol-3-yloxy]ethyl moiety fits well into the primary hydrophobic region of the Glennon model, tolerating sterically demanding residues. However, the morpholine ring does not fulfill the requirements to address the second hydrophobic region.
Ligands 8 with excellent σ1 receptor binding affinity and selectivity were further evaluated for their activity at the hERG channel and for efficacy in mouse models of neuropathic pain. Naphthylpyrazole 8c proved to be the most promising candidate with regard to metabolic stability, interaction with the hERG channel (IC50 > 10 μM), and analgesic activity in different pain models (Diaz et al. 2012). It was found that 8c shows dose-dependent analgesic effects in both the capsaicin-induced hypersensitivity and the formalin-induced pain model. In the partial sciatic nerve ligation mouse model, 8c shows dose-dependent inhibition of thermal hypersensitivity and mechanical allodynia, comparable to the effects of pregabalin, the gold-standard for the treatment of neuropathic pain.
The selectivity of 8c towards 170 other targets including various receptors and ion channels was shown. With the exception of moderate affinity for the human serotonin 5-HT2B receptor (K i(5-HT2B) = 328 nM) other targets were not engaged by 8c. The antagonist profile of 8c was verified using phenytoin as an allosteric modulator of σ1.
The chemical properties of 8c meet Lipinski’s “rule of five.” The pharmacokinetic properties were evaluated in mice. Due to the acceptable solubility and high metabolic stability, a good oral bioavailability can be assumed.
In light of all of the aforementioned properties, 8c entered clinical trials. Passing the single and multiple dose phase I clinical study provided proof-of-concept that 8c is safe and well tolerated by healthy humans. Thus, the development of 8c will be continued into phase II clinical trials (Abadias et al. 2013).
10 3,4-Dihydro-2(1H)-quinolones
3,4-Dihydro-2(1H)-quinolones 9 were developed following the idea of combining a piperidine or morpholine basic element (as realized in the σ1 receptor antagonist 8c) with the quinolone scaffold, which was identified as the interacting element at the σ1 receptor (Oshiro et al. 2000). The aim was to obtain compounds with high affinity for the σ1 receptor and potent anti-nociceptive properties as shown for S1RA.
For the synthesis of quinolones 9, 7-hydroxyquinolone 29 was alkylated with dibromoalkans with various length of the alkyl group (Scheme 8). Subsequent reaction with morpholine or piperidine led to the amines 30, which were converted into 1-alkylated quinolones 9 by reaction with benzyl bromides or iodomethane in presence of NaH (Lan et al. 2014).
The σ1 and σ2 affinity of quinolones 9 was determined in competition experiments using guinea pig brain membrane preparations (Table 8).
The distance between the quinolone scaffold and the morpholine ring has a strong impact on σ1 binding affinity. Whereas 9a with an ethylene spacer has negligible affinity for σ1 (K i(σ1) > 2,000 nM), the corresponding homolog 9b bearing three CH2 moieties in the side chain binds σ1 with high affinity (K i(σ1) = 14.8 nM). Elongation by introduction of additional methylene moieties decreased σ1 affinity in the order n = 3 > n = 4 > n = 5 > n = 6. Compound 9i, with a hexamethylene linker, had the lowest σ1 binding affinity of this set of compounds with a K i value of 682 nM. Replacement of the morpholine ring of the most potent ligand 9b of this series by a piperidine ring led to an almost tenfold increase in σ1 binding affinity (K i(σ1) = 1.84 nM). For the promising piperidine derivatives, the effect of the quinolinone N-substituent on σ1 receptor binding was evaluated by synthesizing different substituted analogs 9c, 9d, and 9f. It has been found that small residues led to decreased σ1 affinity compared with the N-benzyl substituted derivative 9e (K i(σ1) = 1.84 nM). In the case of substitution with a proton or a methyl group, the K i values were only 89 nM (9c) or 34 nM (9d). The substitution of the phenyl ring with an electron-withdrawing fluorine atom led to a slight increase in σ1 binding affinity (9f, K i(σ1) = 1.22 nM).
Regarding σ1/σ2 selectivity, it was found that the most potent σ1 ligand 9f has also the highest selectivity with a σ2 K i > 1,000 nM. For the piperidine derivatives 9c-f, the σ2 affinity increased with decreased size of substituents. The secondary lactam 9c shows the highest σ2 affinity and the lowest σ1/σ2 selectivity of this set of compounds (K i(σ2 = 288 nM, σ1/σ2 = 3). The chain length between the quinolone scaffold and the morpholine residue also influences affinity for the σ2 receptor. Compounds 9a (n = 2), 9h (n = 5), and 9i (n = 6) do not show σ2 affinity. However, compounds 9b and 9g with a trimethylene or tetramethylene linker displayed moderate σ2 affinity, with a K i of approximately 500 nM.
The most potent ligand 9f was further evaluated for its anti-nociceptive activity in the formalin-induced pain assay. It was found that 9f dose-dependently reduced both phases of the pain response with ED50 values of 49.4 ± 4.1 and 50.5 ± 2.5 mg/kg for the acute phase I and the longer-lasting tonic phase II, respectively. The σ1 antagonist activity of 9e was shown using phenytoin as an allosteric modulator of σ1.
11 Conclusion
During the past several years, the fields of σ1 receptor chemistry and pharmacology have made remarkable progress. Various pharmacophore models of σ1 ligands, a 3D homology model of the σ1 receptor, its structure in solution (NMR), and its structure in the solid state (X-ray crystallography) have been reported, allowing a closer look at the binding properties of σ1 receptors to their ligands. Evidence of σ1 as a promising target for the development of new therapeutic approaches has been demonstrated. The σ1 antagonist S1RA (8c) is currently in clinical trials for the treatment of neuropathic pain. Bicyclic piperazines 2 and 3 inhibit the growth of small cell lung cancer cells (A-427 cells) in a dose-dependent manner, demonstrating their potential as new tumor therapeutics. The (S)-configured spirocyclic σ1 antagonist 4b (fluspidine) with a fluoroethyl side chain has been developed as tracer for positron emission tomography (PET) and is currently in clinical trials for imaging and analysis of the brain of patients suffering from major depression.
References
Abadias M, Escriche M, Vaque A, Sust M, Encina G (2013) Safety, tolerability and pharmacokinetics of single and multiple doses of a novel sigma-1 receptor antagonist in three randomized phase I studies. Br J Clin Pharmacol 75:103–117
Bedurftig S, Wunsch B (2004) Chiral, nonracemic (piperazin-2-yl)methanol derivatives with sigma-receptor affinity. Bioorg Med Chem 12:3299–3311
Bermack JE, Debonnel G (2001) Modulation of serotonergic neurotransmission by short- and long-term treatments with sigma ligands. Brit J Pharmacol 134:691–699
Chien CC, Pasternak GW (1993) Functional antagonism of morphine analgesia by (+)-pentazocine-evidence for an anti-opioid sigma(1) system. Eur J Pharmacol 250:R7–R8
Chien CC, Pasternak GW (1994) Selective antagonism of opioid analgesia by a sigma-system. J Pharmacol Exp Ther 271:1583–1590
Chien CC, Pasternak GW (1995) Sigma-antagonists potentiate opioid analgesia in rats. Neurosci Lett 190:137–139
Chu UB, Ruoho AE (2016) Biochemical pharmacology of the sigma-1 receptor. Mol Pharmacol 89:142–153
Diaz JL, Cuberes R, Berrocal J, Contijoch M, Christmann U, Fernandez A et al (2012) Synthesis and biological evaluation of the 1-Arylpyrazole class of sigma(1) receptor antagonists: identification of 4-{2-[5-methyl-1-(naphthalen-2-yl)-1H-pyrazol-3-yloxy]ethyl}morpholine (S1RA, E-52862). J Med Chem 55:8211–8224
Ela C, Barg J, Vogel Z, Hasin Y, Eilam Y (1994) Sigma-receptor ligands modulate contractility, Ca++ influx and beating rate in cultured cardiac myocytes. J Pharmacol Exp Ther 269:1300–1309
Entrena JM, Cobos EJ, Nieto FR, Cendan CM, Gris G, Del Pozo E et al (2009) Sigma-1 receptors are essential for capsaicin-induced mechanical hypersensitivity: studies with selective sigma-1 ligands and sigma-1 knockout mice. Pain 143:252–261
Fischer S, Wiese C, Maestrup EG, Hiller A, Deuther-Conrad W, Scheunemann M et al (2011) Molecular imaging of sigma receptors: synthesis and evaluation of the potent sigma(1) selective radioligand [F-18]fluspidine. Eur J Nucl Med Mol Imaging 38:540–551
Fontanilla D, Johannessen M, Hajipour AR, Cozzi NV, Jackson MB, Ruoho AE (2009) The hallucinogen N,N-dimethyltryptamine (DMT) is an endogenous sigma-1 receptor regulator. Science 323:934–937
Geiger C, Zelenka C, Weigl M, Frohlich R, Wibbeling B, Schepmann D et al (2007) Synthesis of bicyclic sigma receptor ligands with cytotoxic activity. J Med Chem 50:6144–6153
Gilligan PJ, Cain GA, Christos TE, Cook L, Drummond S, Johnson AL et al (1992) Novel piperidine sigma receptor ligands as potential antipsychotic-drugs. J Med Chem 35:4344–4361
Glennon RA (2005) Pharmacophore identification for sigma-1 (sigma(1)) receptor binding: application of the “deconstruction reconstruction elaboration” approach. Mini-Rev Med Chem 5:927–940
Glennon RA, Ablordeppey SY, Ismaiel AM, Elashmawy MB, Fischer JB, Howie KB (1994) Structural features important for sigma(1) receptor-binding. J Med Chem 37:1214–1219
Grosse Maestrup E (2010) Synthese, Charakterisierung und Optimierung fluorierter σ1 Rezeptor-Liganden zur Entwicklung eines PET-Tracers für die Hirnforschung. Westfälische Wilhelms-Universität Münster
Hascoet M, Bourin M, Payeur R, Lombet A, Peglion JL (1995) Sigma ligand S14905 and locomotor activity in mice. Eur Neuropsychopharmacol 5:481–489
Hashimoto K, Ishiwata K (2006) Sigma receptor ligands: possible application as therapeutic drugs and as radiopharmaceuticals. Curr Pharm Des 12:3857–3876
Hayashi T, Su TP (2007) Sigma-1 receptor chaperones at the ER-mitochondrion interface regulate Ca2+ signaling and cell survival. Cell 131:596–610
Holl R, Dykstra M, Schneiders M, Frohlich R, Kitamura M, Wurthwein EU et al (2008) Synthesis of 2,5-Diazabicyclo[2.2.2]octanes by Dieckmann analogous cyclization. Aust J Chem 61:914–919
Holl R, Schepmann D, Wunsch B (2012) Homologous piperazine-alcanols: chiral pool synthesis and pharmacological evaluation. MedChemComm 3:673–679
Holl K, Falck E, Kohler J, Schepmann D, Humpf HU, Brust P et al (2013) Synthesis, characterization, and metabolism studies of fluspidine enantiomers. ChemMedChem 8:2047–2056
Hong WM, Werling LL (2000) Evidence that the sigma(1) receptor is not directly coupled to G proteins. Eur J Pharmacol 408:117–125
Ishikawa M, Ishiwata K, Ishii K, Kimura Y, Sakata M, Naganawa M et al (2007) High occupancy of sigma-1 receptors in the human brain after single oral administration of fluvoxamine: a positron emission tomography study using [C-11]SA4503. Biol Psychiatry 62:878–883
James ML, Shen B, Zavaleta CL, Nielsen CH, Mesangeau C, Vuppala PK et al (2012) New positron emission tomography (PET) radioligand for imaging sigma-1 receptors in living subjects. J Med Chem 55:8272–8282
Kohler J, Wunsch B (2006) Lipase catalyzed enantioselective desymmetrization of a prochiral pentane-1,3,5-triol derivative. Tetrahedron-Asymmetry 17:3091–3099
Kohler J, Wunsch B (2012) Conversion of a pentane-1,3,5-triol derivative using lipases as chiral catalysts and possible function of the lid for the regulation of substrate selectivity and enantioselectivity. Biocatal Biotransformation 30:217–225
Kohler J, Bergander K, Fabian J, Schepmann D, Wunsch B (2012) Enantiomerically pure 1,3-Dioxanes as highly selective NMDA and sigma(1) receptor ligands. J Med Chem 55:8953–8957
Laggner C, Schieferer C, Fiechtner B, Poles G, Hoffmann MD, Glossmann H et al (2005) Discovery of high-affinity ligands of sigma(1) receptor, ERG2, and emopamil binding protein by pharmacophore modeling and virtual screening. J Med Chem 48:4754–4764
Lan Y, Chen Y, Xu XQ, Qiu YL, Liu SC, Liu X et al (2014) Synthesis and biological evaluation of a novel sigma-1 receptor antagonist based on 3,4-dihydro-2(1H)-quinolinone scaffold as a potential analgesic. Eur J Med Chem 79:216–230
Laurini E, Dal Col V, Mamolo MG, Zampieri D, Posocco P, Fermeglia M et al (2011) Homology model and docking-based virtual screening for ligands of the sigma(1) receptor. ACS Med Chem Lett 2:834–839
Laurini E, Marson D, Dal Col V, Fermeglia M, Mamolo MG, Zampieri D et al (2012) Another brick in the wall. Validation of the sigma(1) receptor 3D model by computer-assisted design, synthesis, and activity of new sigma(1) ligands. Mol Pharm 9:3107–3126
Lupardus PJ, Wilke RA, Aydar E, Palmer CP, Chen YM, Ruoho AE et al (2000) Membrane-delimited coupling between sigma receptors and K+ channels in rat neurohypophysial terminals requires neither G-protein nor ATP. J Physiol-London 526:527–539
Maestrup EG, Fischer S, Wiese C, Schepmann D, Hiller A, Deuther-Conrad W et al (2009) Evaluation of spirocyclic 3-(3-fluoropropyl)-2-benzofurans as sigma(1) receptor ligands for neuroimaging with positron emission tomography. J Med Chem 52:6062–6072
Maestrup EG, Wiese C, Schepmann D, Brust P, Wunsch B (2011) Synthesis, pharmacological activity and structure affinity relationships of spirocyclic sigma(1) receptor ligands with a (2-fluoroethyl) residue in 3-position. Bioorg Med Chem 19:393–405
Maier CA, Wunsch B (2002a) Novel spiropiperidines as highly potent and subtype selective sigma-receptor ligands. Part 1. J Med Chem 45:438–448
Maier CA,Wunsch B (2002b) Novel sigma receptor ligands. Part 2. SAR of spiro[[2]benzopyran-1,4′-piperidines] and spiro[[2]benzofuran-1,4′-piperidines] with carbon substituents in position 3. J Med Chem 45:4923–4930
Maisonial A, Maestrup EG, Fischer S, Hiller A, Scheunemann M, Wiese C et al (2011) A F-18-labeled fluorobutyl-substituted spirocyclic piperidine derivative as a selective radioligand for PET imaging of sigma(1) receptors. ChemMedChem 6:1401–1410
Maisonial A, Maestrup EG, Wiese C, Hiller A, Schepmann D, Fischer S et al (2012) Synthesis, radiofluorination and pharmacological evaluation of a fluoromethyl spirocyclic PET tracer for central sigma(1) receptors and comparison with fluoroalkyl homologs. Bioorg Med Chem 20:257–269
Mash DC, Zabetian CP (1992) Sigma receptors are associated with cortical limbic areas in the primate brain. Synapse 12:195–205
Matsumoto RR, McCracken KA, Pouw B, Miller J, Bowen WD, Williams W et al (2001) N-alkyl substituted analogs of the sigma receptor ligand BD1008 and traditional sigma receptor ligands affect cocaine-induced convulsions and lethality in mice. Eur J Pharmacol 411:261–273
Ortega-Roldan JL, Ossa F, Amin NT, Schnell JR (2015) Solution NMR studies reveal the location of the second transmembrane domain of the human sigma-1 receptor. FEBS Lett 589:659–665
Oshiro Y, Sakurai Y, Sato S, Kurahashi N, Tanaka T, Kikuchi T et al (2000) 3,4-Dihydro-2(1H)-quinolinone as a novel antidepressant drug: synthesis and pharmacology of 1-[3-[4-(3-chlorophenyl)-1-piperazinyl]propyl]-3,4-dihydro-5-methoxy-2(1H)-quinolinone and its derivatives. J Med Chem 43:177–189
Rack E, Frohlich R, Schepmann D, Wunsch B (2011) Design, synthesis and pharmacological evaluation of spirocyclic sigma(1) receptor ligands with exocyclic amino moiety (increased distance 1). Bioorg Med Chem 19:3141–3151
Rossi D, Pedrali A, Urbano M, Gaggeri R, Serra M, Fernandez L et al (2011) Identification of a potent and selective sigma(1) receptor agonist potentiating NGF-induced neurite outgrowth in PC12 cells. Bioorg Med Chem 19:6210–6224
Ruoho AE, Chu UB, Ramachandran S, Fontanilla D, Mavlyutov T, Hajipour AR (2012) The ligand binding region of the sigma-1 receptor: studies utilizing photoaffinity probes, sphingosine and N-alkylamines. Curr Pharm Des 18:920–929
Samovilova NN, Nagornaya LV, Vinogradov VA (1988) (+)-[H-3]Skf 10,047 binding-sites in rat-liver. Eur J Pharmacol 147:259–264
Schmidt HR, Zheng SD, Gurpinar E, Koehl A, Manglik A, Kruse AC (2016) Crystal structure of the human sigma 1 receptor. Nature 532:527–530
Schwarz S, Pohl P, Zhou GZ (1989) Steroid binding at sigma-opioid receptors. Science 246:1635–1637
Sharkey J, Glen KA, Wolfe S, Kuhar MJ (1988) Cocaine binding at sigma-receptors. Eur J Pharmacol 149:171–174
Skuza G, Rogoz Z (2006) Effect of BD 1047, a sigma(1) receptor antagonist, in the animal models predictive of antipsychotic activity. Pharmacol Rep 58:626–635
Su TP, London ED, Jaffe JH (1988) Steroid binding at sigma-receptors suggests a link between endocrine, nervous, and immune-systems. Science 240:219–221
Sunnam SK (2010) Synthesis of 7,9-diazabicyclo(4.2.2)decanes as conformationally restricted sigma1 ligands and kappa agonists. Westfälische Wilhelms-Universität Münster
Utech T, Kohler J, Buschmann H, Holenz J, Vela JM, Wunsch B (2011) Synthesis and pharmacological evaluation of a potent and selective sigma(1) receptor antagonist with high Antiallodynic activity. Arch Pharm 344:415–421
Wang X, Li Y, Deuther-Conrad W, Xie F, Chen X, Cui MC et al (2013) Synthesis and biological evaluation of F-18 labeled fluoro-oligo-ethoxylated 4-benzylpiperazine derivatives for sigma-1 receptor imaging. Bioorg Med Chem 21:215–222
Weber F (2012) Synthese und Beziehungen zwischen Struktur, σ-Rezeptoraffinität und cytotoxischer Aktivität von überbrückten Piperazin-Derivaten und deren flexibler Analoga. Westfälische Wilhelms-Universität Münster
Weber F, Brune S, Korpis K, Bednarski PJ, Laurini E, Dal Col V et al (2014) Synthesis, pharmacological evaluation, and sigma(1) receptor interaction analysis of hydroxyethyl substituted Piperazines. J Med Chem 57:2884–2894
Weber F, Brune S, Borgel F, Lange C, Korpis K, Bednarski PJ et al (2016) Rigidity versus flexibility: is this an issue in sigma(1) receptor ligand affinity and activity? J Med Chem 59:5505–5519
Weissman AD, Su TP, Hedreen JC, London ED (1988) Sigma-receptors in post-mortem human brains. J Pharmacol Exp Ther 247:29–33
Zampieri D, Mamolo MG, Laurini E, Florio C, Zanette C, Fermeglia M et al (2009) Synthesis, biological evaluation, and three-dimensional in silico pharmacophore model for sigma(1) receptor ligands based on a series of substituted benzo[d]oxazol-2(3H)-one derivatives. J Med Chem 52:5380–5393
Acknowledgement
This work was supported by the Deutsche Forschungsgemeinschaft, which is gratefully acknowledged. The authors would like to thank Susann Rath and Melanie Bergkemper for their proofreading and especially Dirk Schepmann for his helpful input in developing this review.
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Weber, F., Wünsch, B. (2017). Medicinal Chemistry of σ1 Receptor Ligands: Pharmacophore Models, Synthesis, Structure Affinity Relationships, and Pharmacological Applications. In: Kim, F., Pasternak, G. (eds) Sigma Proteins: Evolution of the Concept of Sigma Receptors. Handbook of Experimental Pharmacology, vol 244. Springer, Cham. https://doi.org/10.1007/164_2017_33
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