Abstract
Purpose of Review
Human erythrocytes are responsible for oxygen delivery in the body. Erythrocytes are a product of terminal differentiated erythroid cells that accumulate hemoglobin and exclude nuclei. The long-held conventional wisdom has been that mature erythrocytes lack any genetic materials. Contrary to this view, accumulating evidence from multiple groups indicates that erythrocytes contain abundant and diverse RNA species. These newly discovered genetic materials suddenly open up opportunities to re-examine many diseases affecting erythrocytes.
Recent Findings
The genomic analysis and functional studies of the erythrocyte transcriptome have revealed important insights into various erythrocyte diseases, stored erythrocytes for transfusion, host-pathogens interactions with malaria parasites, and intercellular communications. We reviewed these findings and provide conceptual frameworks for the future works on other potential applications of the erythrocyte transcriptome.
Summary
Collectively, these studies provide a strong case for the translational potential and functional relevance of these erythrocyte transcripts.
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References
Papers of particular interest, published recently, have been highlighted as: • Of importance •• Of major importance
Kwiatkowski DP (2005) How malaria has affected the human genome and what human genetics can teach us about malaria. Am J Hum Genet 77(2):171–192
Pauling L, Itano HA et al (1949) Sickle cell anemia a molecular disease. Science 110(2865):543–548
Tanke HJ, Nieuwenhuis IA, Koper GJ et al (1981) Flow cytometry of human reticulocytes based on RNA fluorescence. Cytometry 1(5):313–320
• Azzouzi I, Moest H, Wollscheid B et al (2015) Deep sequencing and proteomic analysis of the microRNA-induced silencing complex in human red blood cells. Exp Hematol 43(5):382–392 This paper describes the integrative erythrocyte microRNAs and associated Ago2-associated proteomics in the erythrocytes. These data indicate many of the erythrocytes microRNAs are associated with Ago2-containing RISC complex.
Chen SY, Wang Y, Telen MJ et al (2008) The genomic analysis of erythrocyte microRNA expression in sickle cell diseases. PLoS One 3(6):e2360
Kannan M, Atreya C (2010) Differential profiling of human red blood cells during storage for 52 selected microRNAs. Transfusion 50(7):1581–1588
Rathjen T, Nicol C, McConkey G et al (2006) Analysis of short RNAs in the malaria parasite and its red blood cell host. FEBS Lett 580(22):5185–5188
Sarachana T, S Kulkarni, Atreya CD (2015) Evaluation of small noncoding RNAs in ex vivo stored human mature red blood cells: changes in noncoding RNA levels correlate with storage lesion events. Transfusion 55(11):2672-2683
Xue X, Zhang Q, Huang Y et al (2008) No miRNA were found in Plasmodium and the ones identified in erythrocytes could not be correlated with infection. Malar J 7:47
Sangokoya C, LaMonte G, Chi J (2010) Isolation and characterization of microRNAs of human mature erythrocytes. Methods Mol Biol 667:193–203
•• Mantel PY, Hjelmqvist D, Walch M et al (2016) Infected erythrocyte-derived extracellular vesicles alter vascular function via regulatory Ago2-miRNA complexes in malaria. Nat Commun 7:12727 This paper describes the erythrocyte Ago2-microRNAs can regulate target genes of endothelial cells through the secreted microvescicles from malaria-infected erythrocytes.
• Doss J, Corcoran D, Jima D et al (2015) A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes. BMC Genomics 16(1):952 This paper describes the integrated transcriptome analysis of microRNAs and mRNAs in the mature erythrocytes.
Pritchard CC, Kroh E, Wood B et al (2012) Blood cell origin of circulating microRNAs: a cautionary note for cancer biomarker studies. Cancer Prev Res (Phila) 5(3):492–497
Dore LC, Amigo JD, Dos Santos CO et al (2008) A GATA-1-regulated microRNA locus essential for erythropoiesis. Proc Natl Acad Sci U S A 105(9):3333–3338
Yu D, dos Santos CO, Zhao G et al (2010) miR-451 protects against erythroid oxidant stress by repressing 14-3-3zeta. Genes Dev 24(15):1620–1633
Sangokoya C, Telen MJ, Chi JT (2010) microRNA miR-144 modulates oxidative stress tolerance and associates with anemia severity in sickle cell disease. Blood 116(20):4338–4348
Fu YF, Du TT, Dong M et al (2009) Mir-144 selectively regulates embryonic alpha-hemoglobin synthesis during primitive erythropoiesis. Blood 113(6):1340–1349
Patrick DM, Zhang CC, Tao Y et al (2010) Defective erythroid differentiation in miR-451 mutant mice mediated by 14-3-3zeta. Genes Dev 24(15):1614–1619
Byon JC, Padilla SM, Papaynnopoulou T (2014) Deletion of Dicer in late erythroid cells results in impaired stress erythropoiesis in mice. Exp Hematol 42(10):852-6e1
Wang LS, Li L, Li L et al MicroRNA-486 regulates normal erythropoiesis and enhances growth and modulates drug response in CML progenitors. Blood 125(8):1302–1313
Shaham L, Vendramini E, Ge Y et al (2014) MicroRNA-486-5p is an erythroid oncomiR of the myeloid leukemias of Down syndrome. Blood 125(8):1302–1313 125(8):1292-301
Noh SJ, Miller SH, Lee YT et al (2009) Let-7 microRNAs are developmentally regulated in circulating human erythroid cells. J Transl Med 7:98
Teruel-Montoya R, Kong X, Abraham S et al (2014) MicroRNA expression differences in human hematopoietic cell lineages enable regulated transgene expression. PLoS One 9(7):e102259
Walsh M, Lutz RJ, Cotter TG et al (2002) Erythrocyte survival is promoted by plasma and suppressed by a Bak-derived BH3 peptide that interacts with membrane-associated Bcl-X(L). Blood 99(9):3439–3448
Zhang J, Loyd MR, Randall MS et al (2012) A short linear motif in BNIP3L (NIX) mediates mitochondrial clearance in reticulocytes. Autophagy 8(9):1325–1332
Conboy J, Kan YW, Shohet SB et al (1986) Molecular cloning of protein 4.1, a major structural element of the human erythrocyte membrane skeleton. Proc Natl Acad Sci U S A 83(24):9512–9516
Gill FM, Sleeper LA, Weiner SJ et al (1995) Clinical events in the first decade in a cohort of infants with sickle cell disease. Cooperative Study of Sickle Cell Disease [see comments]. Blood 86(2):776–783
Castro O, Brambilla DJ, Thorington B et al (1994) The acute chest syndrome in sickle cell disease: incidence and risk factors. The Cooperative Study of Sickle Cell Disease. Blood 84(2):643–649
Vichinsky EP, Styles LA, Colangelo LH et al (1997) Acute chest syndrome in sickle cell disease: clinical presentation and course. Blood 89(5):1787–1792
Ashley-Koch AE, Elliott L, Kail ME et al (2008) Identification of genetic polymorphisms associated with risk for pulmonary hypertension in sickle cell disease. Blood 111(12):5721–5726
Steinberg MH, Adewoye AH (2006) Modifier genes and sickle cell anemia. Curr Opin Hematol 13(3):131–136
Sankaran VG, Menne TF, Xu J et al (2008) Human fetal hemoglobin expression is regulated by the developmental stage-specific repressor BCL11A. Science 322(5909):1839–1842
Macari ER, Lowrey CH (2011) Induction of human fetal hemoglobin via the NRF2 antioxidant response signaling pathway. Blood 117(22):5987–5997
Doss JF, Jonassaint JC, Garrett ME et al (2016) Phase 1 study of a sulforaphane-containing broccoli sprout homogenate for sickle cell disease. PLoS One 11(4):e0152895
Deitsch K, Driskill C, Wellems T (2001) Transformation of malaria parasites by the spontaneous uptake and expression of DNA from human erythrocytes. Nucleic Acids Res 29(3):850–853
LaMonte G, Philip N, Reardon J et al (2012) Translocation of sickle cell erythrocyte microRNAs into Plasmodium falciparum inhibits parasite translation and contributes to malaria resistance. Cell Host Microbe 12(2):187–199 .
Hall N, Karras M, Raine JD et al (2005) A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses. Science 307(5706):82–86
Baum J, Papenfuss AT, Mair GR et al (2009) Molecular genetics and comparative genomics reveal RNAi is not functional in malaria parasites. Nucleic Acids Res 37(11):3788–3798
Bahl A, Brunk B, Crabtree J et al (2003) PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. Nucleic Acids Res 31(1):212–215
Lacsina JR, LaMonte G, Nicchitta CV et al (2011) Polysome profiling of the malaria parasite Plasmodium falciparum. Mol Biochem Parasitol 179(1):42–46
Mantel PY, Hoang AN, Goldowitz I et al (2013) Malaria-infected erythrocyte-derived microvesicles mediate cellular communication within the parasite population and with the host immune system. Cell Host Microbe 13(5):521–534
Regev-Rudzki N, Wilson DW, Carvalho TG et al (2013) Cell-cell communication between malaria-infected red blood cells via exosome-like vesicles. Cell 153(5):1120–1133
Nantakomol D, Dondorp AM, Krudsood S et al (2011) Circulating red cell-derived microparticles in human malaria. J Infect Dis 203(5):700–706
Creemers EE, Tijsen AJ, Pinto YM (2012) Circulating microRNAs: novel biomarkers and extracellular communicators in cardiovascular disease? Circ Res 110(3):483–495
Kirschner MB, Kao SC, Edelman JJ et al (2011) Haemolysis during sample preparation alters microRNA content of plasma. PLoS One 6(9):e24145
Tonge DP, Gant TW (2016) What is normal? Next generation sequencing-driven analysis of the human circulating miRNAOme. BMC Mol Biol 17:4
Carson JL, Grossman BJ, Kleinman S et al (2012) Red blood cell transfusion: a clinical practice guideline from the AABB*. Ann Intern Med 157(1):49–58
United States Department of Health and Human Services. The 2011 National Blood Collection and Utilization Survey Report. Washington. 2011 [cited 2014 June 6]; Available from: https://www.hhs.gov/sites/default/files/ash/bloodsafety/2011-nbcus.pdf.
Hess JR (2010) Red cell changes during storage. Transfus Apher Sci 43(1):51–59
Doctor A, Spinella P (2012) Effect of processing and storage on red blood cell function in vivo. Semin Perinatol 36(4):248–259
Kim-Shapiro DB, Lee J, Gladwin MT (2011) Storage lesion: role of red blood cell breakdown. Transfusion 51(4):844–851
Kor DJ, Van Buskirk CM, Gajic O (2009) Red blood cell storage lesion. Bosn J Basic Med Sci 9(suppl 1):21–27
Bennett-Guerrero E, Veldman TH, Doctor A et al (2007) Evolution of adverse changes in stored RBCs. Proc Natl Acad Sci U S A 104(43):17063–17068
Beutler E, Meul A, Wood LA (1969) Depletion and regeneration of 2,3-diphosphoglyceric acid in stored red blood cells. Transfusion 9(3):109–115
Acknowledgements
This research was funded by the Duke Chancellor’s pilot project fund and the Burroughs Wellcome Fund. P.H.C. was supported by the Hung-Taiwan Duke Fellowship and the graduate program of Molecular Genetics and Microbiology.
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Po-Han Chen, Jonathan Hong and Jen-Tsan Chi declare that they have no conflict of interest.
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This article does not contain any studies with human or animal subjects performed by any of the authors.
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This article is part of the Topical Collection on RNA in Pathobiology
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Chen, PH., Hong, J. & Chi, JT. Discovery, Genomic Analysis, and Functional Role of the Erythrocyte RNAs. Curr Pathobiol Rep 5, 43–48 (2017). https://doi.org/10.1007/s40139-017-0124-z
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DOI: https://doi.org/10.1007/s40139-017-0124-z