Abstract
GSTP1 involved in the metabolism of carcinogens and toxins, reduces damage of DNA and act as a suppressor of carcinogenesis. Many studies have reported that 313 A > G polymorphism is associated with different cancer in Indian population, but the results remain conflicting rather than conclusive. Therefore, we have performed meta-analysis to clarify the more precise association of GSPT1 313 A > G polymorphism with cancer risk in Indian population. We retrieved all relevant published literature from PubMed (Medline) and Google scholar web database and included those study only based on the established inclusion criteria. Pooled ORs and 95% CIs were used to appraise the strength of association. Publication bias and sensitivity analysis was also evaluated. A total of 6581 confirmed cancer cases and 8218 controls were included from eligible thirty nine case–controls studies. Pooled analysis suggested that the variant genotypes significantly increased the risk of cancer in allele (G vs. A: OR 1.266, 95% CI 1.129–1.418, p = 0.001), heterozygous (AG vs. AA: OR 1.191, 95% CI 1.047–1.355, p = 0.008), homozygous (GG vs. AA: OR 1.811, 95% CI 1.428–2.297, p = 0.001), dominant (GG + AG vs. AA: OR 1.276, 95% CI 1.110–1.466, p = 0.001) and recessive (GG vs. AG + AA: OR 1.638, 95% CI 1.340–2.002, p = 0.001) genetic models. The stability of these observations was confirmed by a sensitivity analysis. Begger’s funnel plot and Egger’s test did not reveal any publication bias. This meta-analysis suggests that the GSTP1 313 A > G polymorphism may contribute to genetic susceptibility to cancer in Indian population. However, larger studies and randomized clinical trial will be required to elucidate the biological and molecular mechanism of GSTP1 gene in cancer.
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Introduction
Cancer is the most dreadful disease and is the leading cause of high morbidity and mortality in worldwide [1]. Approximately 70% of deaths from cancer occur in developing countries. In India, cancer incidence is predicted to reach 1,148,757 cases in the year 2020 that may lead to a huge socio-economic burden [2]. Cancer is considered as a polygenic disease, whose pathogenesis and molecular mechanism are still intricated and difficult to resolve [3]. Epidemiological studies indicate that interaction between genetic susceptibility genes with an environmental factors and metabolism dysfunction play a key role in development of cancer [4]. Host genetic factors make it even more complex as all individuals who are exposed to these risk factors will not develop the disease since inter-individual differences in genetic susceptibility exist. Identification of host genes and genetic variation in an individual patient may contribute to new approaches to treatment and prevent cancer adeptly [5].
The genes responsible for metabolizing the tobacco carcinogens appear to be prime candidates for the investigative search of cancer susceptibility genes. Glutathione S-Transferases (GSTs) superfamily consists of the broadly expressed phase II xenobiotic metabolizing enzymes located in cytosol. GSTs mediate the conjugation of reduced glutathione with a variety of endogenous and exogenous electrophilic compounds, including several potentially toxic carcinogens and chemotherapeutic drugs, thereby reducing the reactivity of the compounds by making them water soluble and facilitating their elimination from the body for critical defense against carcinogens [6].
Pi-class glutathione-S-transferase (GSTP1) gene spanning approximately 2.84 kb is located on chromosome 11q13 encodes a phase II metabolic enzyme [7], play a key role in the inactivation of toxic and carcinogenic electrophiles [8]. Several single nucleotide polymorphisms (SNPs) has been reported in GSTP1 that lead to changes in amino acids. Among them one is characterized by an A → G transition at nucleotide 313, which replaces ATC (isoleucine) at codon 105 with GTC (valine) (I105V) within the active site of the enzyme [9]. This substitution results in a lower enzymatic activity and is associated with higher hydrophobic adduct levels and higher levels of polycyclic aromatic hydrocarbon-DNA adducts in human lymphocytes [10]. Recent genome-wide association studies (GWAS) have clearly unveiled that SNPs is the most common forms of human genetic variation have an important role in defining individual susceptibility to cancer [11].
Considering the importance of GSTP1 in the detoxification process and protect cell from various carcinogens, the possible influence of 313 (A > G) (rs1695) polymorphism in GSTP1 gene on different cancer risk in Indian population has been investigated extensively [12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50]. However, the results from these studies are inconsistent. Individual published studies contained small number of subjects and may have been underpowered to detect the modest effects of the GSTP1 313 (A > G) polymorphism on cancer susceptibility. To overcome this situation, nowadays meta-analysis statistical tool is used to explore the host risk factors associated with the complex diseases, because it employs a quantitative method to combine the data drawn from individual studies where sample sizes are small to provide reliable conclusions [51]. Given these inconclusive results and the limits of a single study with a small sample size, we performed the present meta-analysis on all eligible published studies in Indian populations to estimate the cumulative association of GSTP1 313 (A > G) gene polymorphism and overall cancer susceptibility.
Materials and Methods
Identification and Eligibility of Studies
The relevant research studies were searched in PubMed, Medline and Google Scholar electronic databases updated in February 2018. The search key words were ““cancer”, “carcinoma,” “malignancy”, and “tumor”, “Glutathione-S-transferase”, “GSTP1”, “Glutathione-S-transferase P1”, and “genetic polymorphism”, “single nucleotide polymorphism”, “genetic variants”, and ‘‘Indian”, “India’’. Furthermore, manual retrieval was undertaken additionally by browsing the references from retrieved articles for other eligible studies. If the same study was researched by more than one study, only the one with the largest sample size was included in our study. If one study investigated multiple cancers, each cancer type was counted as a separate comparison in the group stratified by cancer type. All retrieved articles were downloaded and further screened to identify potentially eligible studies.
Inclusion and Exclusion Criteria
Studies included in the meta-analysis had to meet the following inclusion criteria: (1) original case–control or cohort studies; (2) Cancers cases should have been confirmed by histology or pathology; (3) must have investigated the association between GSTP1 313 A > G polymorphism and cancer susceptibility in Indian population; (4) provided detailed frequency of genotype distribution in the cases and controls. The criteria for exclusion were (1) case reports, editorial, reviews, overlapped data, animal or mechanism studies; (2) no genotype frequency or genotype information provided; (3) no usable data reported.
Data Extraction and Quality Assessment
To minimize the bias and improve the reliability, the methodological quality assessment and data extraction were independently extracted from all eligible studies by two researchers according to the inclusion–exclusion criteria mentioned above. The data collected from each study were as follows: first author’s name, publication year, cancer type, genotyping method, and genotype distribution in cases and controls. Based on the main cancer type of the included studies, cancer types were classified. Disagreement was solved by full discussion until a consensus was reached.
Statistical Analysis
The strength of relationships between GSTP1 313 (A > G) polymorphism and cancer risk was estimated by calculating pooled ORs and their corresponding 95% CIs. Heterogeneity assumption between studies was evaluated by the Chi square-based Q-statistic and I2 statistic [52]. The random effects model (DerSimonia and Laird method) was used to assess pooled OR when there was a significant difference in terms of heterogeneity (if p < 0.05) [53]. Otherwise fixed effects model (the Mantel–Haenszel method) was used [54]. Potential publication bias was estimated by funnel plots and Egger’s test [55]. Moreover, the stability of the results was assessed using sensitivity analysis by deleting each single study involved in the meta-analysis one at a time to reflect the influence of the individual study to the pooled ORs. All p values were two sided and statistical significance level was considered for any test was p value < 0.05.The statistical analysis involved in this meta-analysis was performed by Comprehensive meta-analysis (CMA) version 2 software program (Biostat Inc., USA). To ensure the reliability and accuracy of the statistical analysis, two researchers entered the data into the software program independently and reached a consensus.
Results
Literature Search and Meta-analysis Databases
We have identified one hundred thirty three studies through literature search from the PubMed (Medline) and Google scholar for detailed evaluation. As per the pre-set selection (inclusion–exclusion) criteria, a total thirty nine published studies on association with the GSTP1 313 A > G gene polymorphism and susceptibility to multiple cancers were included in the meta-analysis (Fig. 1). Studies either showing GSTP1 polymorphism to predict survival OR as an indicator for response to therapy of patients were excluded straightaway. Similarly, research articles investigating the levels of GSTP1 mRNA or protein expression and relevant review articles were also excluded. We included only case–control or cohort design studies having frequency of all three genotypes. Eligible studies, publication year, cancer types, total numbers of controls and cases, genotyping methods, distribution of genotypes and minor allele frequency (MAF) in the controls have been shown in Tables 1 and 2.
Publication Bias
Begg’s funnel plot and Egger’s linear regression test were conducted to estimate the possible publication bias among the included studies for this meta-analysis. In the funnel plots, standard error of the log (OR) of each study was plotted against it log (OR). The appearances of funnel plot were symmetrical in all of the comparison models. Furthermore, Egger’s regression test, a linear regression approach for measuring funnel plot on the natural logarithm scale of the OR was used to provide statistical evidence to the funnel plot symmetry and showed no publication bias for all the genetic models (Table 3).
Evaluation of Heterogeneity
In order to test heterogeneity among the selected studies, Q-test and I2 statistics were employed. Heterogeneity was observed in all genetic models, i.e., allele (G vs. A), homozygous (GG vs. AA), heterozygous (AG vs. AA), recessive (GG vs. AG + AA) and dominant (GG + AG vs. AA). Thus, random effects model was applied to synthesize the data for above models (Table 3).
Association of GSTP1 313 A > G Polymorphism and Overall Cancer Susceptibility
We pooled all thirty nine studies together and it resulted into 6581 confirmed cancer cases and 8218 healthy controls to examining the overall association between GSTP1 313 A > G gene polymorphism and cancer risk. The pooled OR from overall analysis indicated that it was significantly associated with increased risk of cancer in allele (G vs. A: OR 1.266, 95% CI 1.129–1.418, p = 0.001), heterozygous (AG vs. AA: OR 1.191, 95% CI 1.047–1.355, p = 0.008), homozygous (GG vs. AA: OR 1.811, 95% CI 1.428–2.297, p = 0.001), dominant (GG + AG vs. AA: OR 1.276, 95% CI 1.110–1.466, p = 0.001) and recessive (GG vs. AG + AA: OR 1.638, 95% CI 1.340–2.002, p = 0.001) comparison models (Figs. 2, 3, 4, 5, 6).
Sensitivity Analysis
To evaluate the stability of the pooled results, sensitivity analysis was conducted. The influence of each study on the pooled OR was checked by repeating the meta-analysis while omitting each study, one at a time. The result of sensitivity analysis showed the corresponding pooled OR value did not significantly change when omitting any single study (figure not shown). This revealed that our results were statistically robust.
Discussion
Diagnosis and prevention of cancer have become one of the most important challenges of this era. Potent markers for screening high-risk populations are urgently needed for early detection and preventive actions. It is therefore, important to identify molecular markers that may help in the diagnosis of this dreadful disease in Indian populations. Several studies have supported an important role for genetics in determining the risk for cancer, and association studies are pertinent for searching susceptibility genes involved in cancer [56].
Metabolism is a cellular process required for the survival and proliferation of all cells, and increased proliferation and sustained survival are hallmarks of cancer [57]. As detoxifying enzyme, GSTs plays an important role in protecting cells from cytotoxic and carcinogenic agents in the defense system. Evidence suggests that the level of expression of GST is a crucial factor in determining the sensitivity of cells to a broad spectrum of toxic chemicals. The altered GST activity associated with the polymorphisms is expected to affect cancer risk through decreased protection against DNA damage from reactive electrophiles.
GSTP1 is widely expressed in normal epithelial cells and metabolize large hydrophobic electrophiles, such as polycyclic aromatic hydrocarbon-derived epoxides [58]. Studies have shown that GSTP1 was present at high levels in many solid tumors and in a wide range of cancer cell lines [59], GSTP1 null mice disposed with carcinogen polycyclic aromatic hydrocarbons demonstrated highly significantly increased risk of cancer [60]. This signified the role of GSTP1 as an important determinant in cancer susceptibility.
Currently, relationship between GSTP1 polymorphisms and cancer is a major area of research focus. The GSTP1 313A > G polymorphism was shown to be a predisposing risk factor for a number of human malignancies, but small size of study is a common limitation of biomarker validation studies. In the present meta-analysis, our main focus was to establish a more conclusive association between the GSTP1 313A > G polymorphism and overall cancer susceptibility in Indian population. Meta-analysis increases statistical strength and precision in estimating effects by combining the results of previous studies, thus overcoming the problem of small sample size and the inadequate statistical strength of complex trait genetic studies [61].
To the best of our knowledge, this meta-analysis is the first study to investigate the association between the GSTP1 313 A > G polymorphism and susceptibility to overall cancer in a large number of Indian populations. After rigorous statistical analysis has been performed for overall comparison of pooled ORs, we found significant increased risk between the GSTP1 313 A > G polymorphism and susceptibility to cancer in allele, homozygous, heterozygous, dominant and recessive genetic models. This result suggested that the GSTP1 313 A > G polymorphism may be a possible susceptibility factor for cancer in the Indian population, especially in individuals with mutant allele and mutant homozygous genotype. Alteration of GSTP1 activity due to 313 A > G polymorphism may lead to increased cell vulnerability to oxidative DNA damage and the accumulation of DNA base adducts, which can precede other genetic alterations lead to carcinogenesis. Numerous studies supported that G allele of GSTP1 313 A > G polymorphism substantially reduced enzyme activity and increased the risk of DNA mutation, resulting in poor elimination of hydrophilic metabolites and consequently increasing the susceptibility to cancer when individuals are exposed to carcinogens [62].
Genetically complex diseases differ from simple Mendelian diseases and cancer etiology is polygenic, a single genetic variant is usually inadequate to predict the risk of this deadly disease. Though, we interpreted our findings with full caution, but, some limitation of our meta-analysis should be addressed. Heterogeneity is an important issue while interpreting the results of meta-analysis, although that can be minimized by applying random-effects model. In the present study we detected heterogeneity in the entire genetic model, which might be due to the control sources and mix of cancers. Most of the studies used hospital-based patients as controls, who were not strictly healthy individuals and could not represent the general population. Gene environment interaction and adjusted OR have not been performed due to the limited number of data.
In spite of these, our meta-analysis still has some advantages. First, this is the first large association study between GSTP1 313 A > G polymorphism demonstrating susceptibility to cancer, which dramatically increase the statistical power of the present analysis than single study. Second, all the eligible studies included in the current meta-analysis researched in Indian population. The participants have the same genetic background, which can reduce the effects of ethnicity on pooled ORs. Third, there was not any publication bias detected, which indicated that the entire pooled result is robust and authentic. Fourth, sensitivity analysis was carried out by deleting each single study involved in the meta-analysis each time and the results did not alter, suggesting that our meta-analysis results were robust and reliable. Moreover, we used strict data extraction criteria and statistical analysis to make satisfactory and consistent conclusion.
Conclusion
Our meta-analysis indicated that the GSTP1 313 A > G gene polymorphism is a strong contender as a genetic susceptibility to cancer in Indian population. This could be used as a biomarker for clinical application and early identification and prevention of cancer. Furthermore, larger scale studies and impact of gene–gene and gene-environment interactions on the GSTP1 313 A > G polymorphism and cancer risk is necessary for providing a better comprehensive understanding of the association.
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The authors acknowledge the software related service support provided by Research and Scientific Studies Unit, College of Nursing and Allied Health Sciences, Jazan University, Saudi Arabia.
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Mandal, R.K., Mittal, R.D. Glutathione S-Transferase P1 313 (A > G) Ile105Val Polymorphism Contributes to Cancer Susceptibility in Indian Population: A Meta-analysis of 39 Case–Control Studies. Ind J Clin Biochem 35, 8–19 (2020). https://doi.org/10.1007/s12291-018-0787-1
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DOI: https://doi.org/10.1007/s12291-018-0787-1