Abstract
The reaction of magnesium nitrate with hexamethylenetetramine (HMTA) in the presence of thiocyanide, dicyanamide (DCA), or azide ions resulted in the formation of the hydrated magnesium(II) compounds [Mg(H2O)6](SCN)2·2HMTA·3H2O (1a), [Mg(H2O)6](DCA)2·3HMTA·H2O (1b) and [Mg(H2O)6](N3)2·2HMTA·4H2O (1c) (DCA = dicyanamide). The compounds were characterized by elemental analysis, IR spectroscopy, thermal analysis, and single-crystal X-ray structure analysis. These coordination compounds crystallize in the Triclinic, P1, Tetragonal, P42/n, and Monoclinic, P21/n space groups, respectively for 1a, 1b, and 1c. The 3D crystal packing structure results from a combination of O–H/H–N interactions. Hirshfeld surface (HS) analysis of the complexes was undertaken to investigate further the intermolecular interactions. Thermal studies of 1a and 1b was undertaken to determine their suitability as precursors for MgO nanoparticles.
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Introduction
The coordination chemistry of the s-block metals recently experienced intense research focus, due to their properties and potential applications in diverse domains such as medicine, catalysis, organometallic synthesis, nanotechnology, industry, and research.(Fromm 2008; Kruszynski et al. 2012, 2015; Westerhausen 2017); The significant roles played by alkali metal ions such as Li + , Na+, and K+ in different biological processes, have rendered their coordination chemistry to be very important, while that of alkaline earth metals is a result of their application in pigments and pharmaceuticals owing to their lower toxicity, lower cost, etc., over the transition and lanthanoid metals.(Fromm 2008; Kruszynski et al. 2015; Shah et al. 2019).
The idea that alkali and alkaline earth metals form stable complexes predominantly with O-donor ligands as compared to N-donor ligands slowed the development of this chemistry. There is a recent surge in the chemistry of these metals, especially towards N-donor ligands, since heterocyclic N-donor ligands can be used as model ligands for many bioactive processes.(Das et al. 2013) An expansion of this research domain is important to understand the types of interactions and structure types formed by these metal ions with bioactive molecules. Likewise, information acquired on the coordination chemistry of these metal ions, with other ligands, will permit us to make comparisons of their coordination patterns and properties to those of transition metals, since s-block metal–organic compounds already find applications in pigments and pharmaceuticals.(Fromm 2008) Also, this will enable the acquisition of relevant information on the useful properties of dinuclear, multinuclear, and polymeric coordination compounds of s-block metals.(Czubacka et al. 2011; Ezzayani et al. 2021; Mengle et al. 2014; Read et al. 2014; Underwood et al. 2014) The interaction of these metals with neutral ligands as well as an understanding of the factors that drive self-organization in the supramolecular structures formed, is of interest, given the importance of these metals in medicine and nanotechnology.(Ezzayani et al. 2021; Leonarski et al. 2019; Rodzik et al. 2020).
Different ligands have been employed in the construction of supramolecular networks with s-block elements. Amongst these ligands used, hexamethylenetetramine (HMTA), a cost-effective, benign, and readily available heterocyclic organic compound with a cage-like structure has been much explored. It has four bridge-head nitrogen atoms with coordination patterns ranging from terminal monodentate to bridging mode between two metal atoms, It is highly soluble in water and polar organic solvents (Kirillov 2011; Yufanyi et al. 2015). HMTA is an excellent hydrogen acceptor with several reports of H-bonded molecular adducts with organic molecules.(Lemmerer 2011; Rivera et al. 2019) While H-bonded networks of transition(Banerjee et al. 2007; Chen et al. 2005; Chopra et al. 2004; Dagur et al. 2003; Ganesh et al. 1990; Hu et al. 2002; Kaihua & Shuhong 2018; Li et al. 2008; Yao et al. 2008; Zhu et al. 2003a, b; Zhu et al. 2003a, b) and lanthanoid (Kumar et al. 2012; Trzesowska-Kruszynska et al. 2010) metals with HMTA have been explored, that of s-block metals is still developing.(Dahan 1974, 1975; Katsaros 1983; Kruszynski et al. 2012, 2015; Sieranski & Kruszynski 2011).
Research interest into understanding the role played and the effects of non-covalent interactions, such as hydrogen bonding (e.g., N–H⋅⋅⋅O, O–H⋅⋅⋅O, and O–H⋅⋅⋅N), weak interactions (e.g. C–H⋅⋅⋅O, C–H⋅⋅⋅N, C–H⋅⋅⋅π, and π⋅⋅⋅π), dipole–dipole, hydrophobic interactions, etc., on the self-assembly of molecular building blocks to generate supramolecular structures, is increasing.(Aakeröy et al. 2010; Desiraju 1994; Jagan et al. 2021; Janiak and Scharmann 2003; Lu et al. 2010; Whitesides and Boncheva 2002) These interactions have enabled the development of supramolecular networks with diverse structures and functional applications, based on a careful choice of metal ion, ligand, co-ligand, and solvent, which are crucial to the structure types obtained and the interactions therein.
We have been interested in the coordination chemistry of transition metals with N-donor ligands, particularly HMTA. This interest is motivated by the fact that some metal complexes of HMTA had previously been used as precursors for metal dispersions,(Afanasiev et al. 2008) metal carbides and nitrides,(Chouzier et al. 2011) and oxide nanoparticles.(Yufanyi et al. 2014) While interactions between magnesium and HMTA are known,(Kaihua and Shuhong 2018; Katsaros 1983; Sieranski and Kruszynski 2011) the influence of other co-ligands on the non-covalent interactions as well as the structure type, and hence crystal packing has not been explored. Herein, we have made use of reactants with different numbers of atoms (potential acceptors or donors) to produce co-crystallized adducts with diverse non-covalent interactions in the structures, on account of the presence of Mg(H2O)62 + , H2O, SCN− (or N3−, or C2N3−) and HMTA. Hirschfeld surface analysis was also performed to visualize the short contacts in the supramolecular structures and to determine the relative contributions of the various non-covalent interactions present in the crystal structures using two-dimensional fingerprint plots. The thermal decomposition study of these compounds has also been presented.
Results and discussion
The reaction of the magnesium salt with HMTA and the co-ligand in methanol, at room temperature, afforded the mononuclear compounds 1a–c, which were found to be air-stable. The compounds were characterized by single-crystal X-ray diffraction, elemental analysis, IR spectroscopy, and thermal analysis. The residues from the thermal analysis were analysed by powder X-ray diffraction.
The molecular structures, along with the atom numbering schemes of 1a–c are presented in Fig. 1 and the packing diagrams in Fig. 2. While the crystal data are presented in Table 1, selected interatomic distances and angles are listed in Table 2. X-ray crystal structure analysis reveals that 1a–c crystallize in the triclinic P1, tetragonal P42/n, and monoclinic, P21/n space groups, respectively. The structures consist of a complex cation Mg(H2O)62+ in addition to two SCN−, three lattice water molecules and two HMTA molecules for 1a, two DCA, one lattice water, and three HMTA molecules for 1b as well as azide, lattice water, and HMTA molecules for 1c, assembled into a 3D supramolecular framework through intermolecular H-bonds. The magnesium (II) ion is in a slightly distorted octahedral coordination environment in which both the equatorial plane and trans-axial planes are occupied by four and two coordinated water molecules, respectively.
In the complex cation Mg(H2O)62 + , the Mg-O bonds [2.0375–2.0696 Å] are within the expected ranges and comparable to literature values.(Sieranski and Kruszynski 2011) The cis-bond angles [87.20(7)–93.15(7)°] around the Mg centers in Mg(H2O)62+ for 1a-c deviate from ideal values, indicating that the octahedra are slightly distorted.
In the crystal structures, several non-covalent interactions exist. Hydrogen bonds abound in the crystal structures of 1a-c which link the molecules into a 3D supramolecular structure. In 1a the O–H···NSCN, O–H···O and O–H···NHMTA H-bonds are found. Each cation, Mg(H2O)62+, is linked through O–H···NSCN, O–H···O and O–H···NHMTA H-bonds (Fig. 3, Table 3) to two HMTA, four SCN− and two water molecules. In addition, C11–H11···S1 H-bonds between HMTA and SCN− are present. This highly intricate H-bonding network between the cation, water, SCN−, and HMTA molecules results in chains and rings of different sizes.
The crystal structures of 1b and 1c are stabilized by a variety of O–H···N intermolecular H-bonds. The O1 and O3 atoms of Mg(H2O)62+ in 1b and 1c are each H-bonded to one DCA and one HMTA or an azide and one HMTA molecule, respectively, while the other O-atoms are H-bonded to one HMTA and a water molecule. In addition to these, weak C–H···N intermolecular interactions extend the complexes into 3D structures.
IR spectroscopy
The relevant infrared bands of HMTA, the co-ligands, and the complexes are listed in Table 4 while the FTIR spectra of the complexes are shown in Fig. 4. The broad bands at 3426–3452 cm−1 are attributed to ν(OH) of coordinated water, while that at 3160 cm−1 is assigned to ν(OH) of lattice water (Afanasiev et al. 2008; Ng et al. 2004). The band at 1230 cm−1, assigned to the ν(CH2) rocking vibration of the free HMTA ligand, is observed at 1238, 1243, and 1240 cm−1, respectively in 1a-c. Strong prominent peaks at 1000 cm−1 and 812 cm−1 due to the C–N stretching vibration of HMTA are slightly shifted to 1005 cm−1 and 813 cm−1, respectively, in the complexes due to changes in the chemical environment.(Agwara et al. 2008) The sharp peak at 2053 cm−1 due to the C≡N vibration of free thiocyanate ion was observed at 2084 cm−1 in 1a while the C–S stretching vibration of the thiocyanate was observed at 751 cm−1 in both the free thiocyanate ion and in 1a. Furthermore, in 1b, the bands at 2287, 2229, and 2181 cm−1 corresponding to νs + νas (C≡N), νas(C≡N) and νs(C≡N) of the dicyanamide were observed at 2254, 2219, and 2162 cm−1, respectively. The very strong band at 2106 cm−1 assigned to νas asymmetric NNN stretch was observed at 2080 cm−1 in 1c.
1a-c contain several different chemical species indicating that there are many possibilities of intermolecular interactions. A good description of these intermolecular interactions is necessary to understand how the crystal is stabilized. The qualitative and quantitative analysis of the intermolecular interactions found in 1a-c was done using 3D Hirschfeld surface analysis and 2D fingerprint map, respectively. The intermolecular interactions were analysed for HMTA and the \({\left[\mathrm{Mg}{\left({\mathrm{H}}_{2}\mathrm{O}\right)}_{6}\right]}^{2+}\) cation in the unit cell to compare the chemical environments in the complexes. The visualization of the Hirschfeld 3D dnorm surface and the overall 2D fingerprint of these chemical species are presented in Fig. 5 for HMTA and Fig. 6 for \({\left[\mathrm{Mg}{\left({\mathrm{H}}_{2}\mathrm{O}\right)}_{6}\right]}^{2+}\).
The analysis of the HS around HMTA (Fig. 5) indicates that all its nitrogen atoms are involved in strong H-bonding with hydrogen atoms of three \({\left[\mathrm{Mg}{\left({\mathrm{H}}_{2}\mathrm{O}\right)}_{6}\right]}^{2+}\) cations and one water molecule. There are also weak hydrogen bonds involving hydrogen atoms of HMTA, one SCN− and one H2O for 1a as well as two N3− and one H2O for 1c. H–H contacts are the most predominant interactions due to the abundance of hydrogen on the molecular surface, followed by N–H and S–H interactions (in 1a). Here, the contribution of C–H–X (X=N, O, S) is about 5%. The contribution of these interactions to the Hirshfeld surface is not the same for the HMTA of the asymmetric unit. These results show that, in the crystal packing of 1a-c, HMTA is mostly engaged in H–H interactions with the surrounding molecules.
The analysis of the 3D Hirschfeld surface around the \({\left[\mathrm{Mg}{\left({\mathrm{H}}_{2}\mathrm{O}\right)}_{6}\right]}^{2+}\) cation of 1a-c reveals the presence of an intense red spot around each hydrogen atom of the complex ion. Hence, all these hydrogen atoms are involved in strong hydrogen bonds with neighbouring chemical species. For 1b and 1c, six of these hydrogen bonds are formed with nitrogen atoms of six HMTA, four with nitrogen atoms of four anions and the other two with the oxygen atoms of two water molecules. In 1a, the same atoms are involved except that there are 3 water molecules and 3 SCN− (one interacts with N atom and 2 with S atom). The white areas of the HS of 1a-c indicate the presence of H–H interactions. These interactions are identified on the 2D fingerprint of these molecules by the tips at \({d}_{i} +{d}_{e}\) between 2.4 and 2.7 Å which is higher or equal to twice the van der Waals radius of hydrogen atom. Thus, the H–H interactions present in 1a-c are attractive van der Waals interactions. Therefore, they participate in the molecular self-assembly process and contribute to the stabilization of the crystal packing.
The contributions of these different interactions obtained from the decomposition of the 2D fingerprints are presented in Table 5. The H–H intermolecular interactions are the most prevalent in these crystal structures followed by N–HOH interactions. However, for 1b all the hydrogen bonds constitute about 55% of the Hirshfeld surface of the \({\left[\mathrm{Mg}{\left({\mathrm{H}}_{2}\mathrm{O}\right)}_{6}\right]}^{2+}\) cation, while it is 45% of the Hirshfeld surfaces of 1a and 1c.
To better appreciate the intermolecular interactions responsible for the crystal packing structure, the nature of the contacts was analyzed by considering the Hirshfeld surface around all the molecules and ions of the asymmetric unit as well as the 2D fingerprint. The results are presented in Fig. 7. The percentage contribution of the contacts to the HS obtained from the decomposition of the 2D fingerprint of 1a, 1b and 1c are summarized in Table 5. From the HS, we observe that strong hydrogen bonds, weak hydrogen bonds, and H–H contacts are all present in the crystal packing of these compounds. H–H interactions are most prevalent, followed by N–H and S–H (1a) interactions. In the crystal packing of 1a, all hydrogen bonds are slightly predominant (4.4 percent) compared to H–H contacts, while in 1b and 1c H–H and all hydrogen bonds have almost the same contribution. The difference between the contributions of hydrogen bonds and H–H contacts is 0.5% and 2.6% for 1b and 1c respectively. C–H–X (N, O, S) weak interactions contribute less (˂ 10%) to the crystal packing of 1a and 1b and it is absent in 1c.
Thermogravimetric analysis
The thermoanalytical curves TG–DTA of 1a-b are presented in Fig. 8 and the data are summarized in Table 6. Both samples decompose in several steps. These thermograms are characterized by endothermic peaks between 130 and 170 °C for 1a and at 170 °C for 1b. The exothermic processes that follow reveal huge mass losses. The endothermic processes that occur within the temperature range 100–190 °C are attributed to the successive loss of both lattice and coordinated water molecules.
The next decomposition step, for 1a, in the range 200–280 °C with mass loss of 26.33% corresponds to the loss of HMTA molecule (Calc. 26.51). The mass loss of 16.07% between 280 and 340 °C is probably due to the loss of two H2O and CO2 molecules (Calc. 15.15%). In the temperature range 380-740 °C which, from the derivative TG plots, consists of several overlapping decomposition steps, there is a mass loss of 32.55% which can be assigned to the decomposition of carbon material and thiocyanate molecule (Calc. 34.02%) in the form of a mixture of gases (CO2, CO, SO2). A 7.04% residue (Calc. 6.80%) is left.
The TG and DTA curves of 1b show the removal of 6 water molecules corresponding to a mass loss of 19.08% in the temperature region 130–180 °C (Calc. 18.62%). The mass loss of 24.46% in the region 200–280 °C can be attributed to the decomposition of HMTA marked by a broad exotherm. Another mass loss of 21.76% is observed at about 300–430 °C which is assigned to the loss of three CO2 molecules (Calc. 22.75%). A final mass loss of 27.79% at 450–750 °C can be assigned to the loss of 2 NO2, CO2, and CO (Calc. 28.27%) with a 7% solid residue (Calc. 7.4%).
Powder XRD
The PXRD patterns of the residues (Fig. 9) indicate that they are highly crystalline with well-defined diffraction patterns, and the peaks could be indexed to the MgO cubic phase. The peaks for MgO at 36.94, 42.90, 62.30, 74.67, and 78.61correspond to the (111), (200), (220), (211), and (222) crystals planes and match the JCPDS (45–0947).(Khandolkar et al. 2015) The average crystallite sizes of 28.5 nm and 44.8 nm, respectively, for 1a and 1b, were calculated from the peak-width at half-height of the (200) peaks, using the Debye–Scherrer equation.
Conclusions
The hydrated magnesium compounds 1a–c, with \({\left[\mathrm{Mg}{\left({\mathrm{H}}_{2}\mathrm{O}\right)}_{6}\right]}^{2+}\) as cation, have been synthesized in which all the HMTA ligands are in the outer coordination sphere, H-bonded to water molecules and the co-ligands SCN−, DCA− or N3−, also present in the outer coordination sphere. The presence and number of the different co-ligands in the complexes affect the number and types of intermolecular interactions present in the crystal structures. Hirshfeld surface analysis indicates that H–H intermolecular interactions are the most prevalent in these crystal structures followed by N–HOH interactions. These hydrogen bonds constitute about 55% of the Hirshfeld surface of the \({\left[\mathrm{Mg}{\left({\mathrm{H}}_{2}\mathrm{O}\right)}_{6}\right]}^{2+}\) cation for 1b, while it is 45% of the Hirshfeld surfaces of 1a and 1c. The Hirshfeld surface around HMTA indicates that all its nitrogen atoms are involved in strong H-bonding with hydrogen atoms of three \({\left[\mathrm{Mg}{\left({\mathrm{H}}_{2}\mathrm{O}\right)}_{6}\right]}^{2+}\) cations and one water molecule. There are also weak hydrogen bonds involving hydrogen atoms of HMTA, one SCN− and one H2O for 1a as well as two N3− and one H2O for 1c. H–H contacts are the most predominant interactions due to the abundance of hydrogen on the molecular surface, followed by N–H and S–H interactions (in 1a). 1a and 1b decompose in a comparable manner in air and the same decomposition product (MgO nanoparticles) is obtained. This indicates that these compounds can be used as suitable precursors for MgO nanoparticles.
Experimental
Materials
Hexamethylenetetramine (HMTA, C6H12N4) was obtained from Prolabo while, magnesium (II) nitrate hexahydrate (Mg(NO3)2·6H2O), and Ammonium thiocyanate (NH4SCN), were obtained from Riedel-de Haën, sodium dicyanamide (NaN(CN)2), and sodium azide (NaN3) were obtained from Sigma Aldrich. All the chemicals were of reagent grade and were used without further purification. All solvents used were dried and distilled according to standard methods.
Synthesis of [Mg(H 2 O) 6 ](SCN) 2 ·2HMTA·3H 2 O (1a).
Mg(NO3)2. 6H2O (1 mmol, 0.25 g) in 10 mL of methanol was added dropwise to 10 mL methanol solution of HMTA (2 mmol, 0.2803 g) and stirred for 30 min. NH4SCN (2 mmol, 0.15 g) in 10 mL methanol was added to the mixture and further stirred for 2 h 30 min. The white precipitate formed was filtered, washed with MeOH, and dried in a desiccator over silica gel. Slow evaporation of the filtrate at room temperature afforded 1a as colorless crystals (80%), m.p. 209˚C: Elemental anal. calcd (%) for C14H42MgN10O9S2 (583.00): C 31.76, H 6.81, N 26.48; found: C 31.26, H 6.15, N 26.52.
Synthesis of [Mg(H 2 O) 6 ](DCA) 2 ·3HMTA·H 2 O (1b).
This was synthesized following the same procedure as for 1a but using NaN(CN)2 (2 mmol, 0.18 g). The white precipitate formed was filtered, washed with MeOH, and dried in a desiccator over silica gel. Slow evaporation of the filtrate at room temperature afforded 1b as colorless crystals (85.2%): Elemental anal. calcd (%) for C16H40MgN14O8 (580.93): C 33.0, H 6.89, N 33.74; found: C 32.85, H 6.43, N 33.01.
Synthesis of [Mg(H 2 O) 6 ](N 3 ) 2 ·2HMTA·4H 2 O (1c).
This was synthesized following the same procedure as for 1a but using NaN3 (2 mmol, 0.13 g). Slow evaporation of the filtrate at room temperature afforded 1c as colorless crystals (82.6%): Elemental anal. calcd (%) for C12H44MgN14O10 (568.92): C 25.31, H 7.73, N 34.45; found: C 25.04, H 7.37, N 33.92.
Characterization
The melting point temperature was recorded using the Leica VMHB Kofler system. Elemental analysis (C, H, N) was carried out on a Flash 2000 Thermo Scientific analyzer while IR spectra of samples, as KBr pellets prepared in a nitrogen-filled glove box, were recorded on a Perkin–Elmer System 2000 FTIR spectrometer in the range 400–4000 cm−1. Thermogravimetric measurements were obtained using a Pyris 6 PerkinElmer TGA 4000 thermal analyzer. The TGA analysis was conducted between 30 and 900 °C in air at a flow rate of 20 mL/min and a temperature ramp of 10 °C/min. Powder XRD measurements were performed with a Stoe-StadiP powder diffractometer with a CuKα (154.0598 pm) X-ray source (0.5°/step and 30 s/step (2 repetitions); tube power: 40 kV/40 mA; scan mode: Debye–Scherrer) using borosilicate glass capillary as sample holder during the measurement. The powder diffraction patterns were analyzed with the help of the STOE powder diffraction system software in combination with the ICDD powder diffraction database (International Centre for Diffraction Data).
Single crystal X-ray structure
Single Crystal X-ray data were collected with an Xcalibur, Sapphire3, Gemini diffractometer λ(Mo-Kα) = 0.71073 Å, T = 130 K for 1a and 1b, and a GEMINI CCD diffractometer (Rigaku Inc.), λ(Mo–Kα) = 0.71073 Å, T = 150(2) K, ω-scan rotation for 1c. Data reduction was performed with CrysAlis Pro including the program SCALE3 ABSPACK for empirical absorption correction. (CrysAlisPro 2013). All structures were solved by dual-space methods with SHELXT-20xy while structure refinement was done with SHELXL-2018 by using full matrix least-square routines against F2. (Sheldrick 2015) The pictures were generated with the program Mercury (Macrae et al. 2006). CCDC 2, 159, 208 for 1a, 2, 159, 209 for 1b, and 1, 485, 334 for 1c contain the supplementary crystallographic data for this paper. These data can be obtained free of charge via www.ccdc.cam.ac.uk/data_request/cif (or from the Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK; fax: (+ 44)1223-336-033; or deposit@ccdc.cam.uk).
Hirshfeld surface (HS) analysis
A Hirshfeld surface analysis was performed to visualize the different types of interactions present within the structures of 1a–c using the CrystalExplorer 21.5 software (Spackman et al. 2021) software. Hirshfeld surface(McKinnon et al. 1998; Spackman and Byrom 1997)and the fingerprint plot (McKinnon et al. 2004; Spackman and McKinnon 2002) together constitute a powerful resource for visualizing, exploring, analyzing, and quantifying intermolecular interactions in molecular crystals(McKinnon et al. 2007) and therefore they can be used to compare molecular crystal structures containing similar atoms(Collins et al. 2010; McKinnon et al. 2007; Parkin et al. 2007).
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Acknowledgements
The authors are grateful to Dr. Kevin Klausmeyer of the Department of Chemistry and Biochemistry, Baylor University, Waco, TX 76798-7348, and Peter Lönnecke of the Institute of Inorganic Chemistry, Universität Leipzig, Johannisallee 29, 04103 Leipzig, Germany, for assistance with single crystal X-ray measurements of the complexes.
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Milo, T.N., Tabong, C.D., Nono, J.H. et al. Hydrated magnesium (II) with H-bonded hexamethylenetetramine and co-ligands: synthesis, structural characterization, thermal decomposition, and hirshfeld surface analysis. Chem. Pap. 76, 6385–6400 (2022). https://doi.org/10.1007/s11696-022-02322-w
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DOI: https://doi.org/10.1007/s11696-022-02322-w