Abstract
Introduction
Entomopathogenic nematodes (EPNs) are important biocontrol agents of insect pests. To increase the availability of locally adapted entomopathogenic nematode isolates for biocontrol programs, a survey of several agricultural soils in Western Uttar Pradesh, India was conducted.
Materials and methods
Eight hundred and sixty soil samples from the districts Meerut, Bulandshahr, Baghpat, and Bijnor were collected and examined for the presence of entomopathogenic nematodos using the “Galleria baiting method”. Steinernema and Heterorhabditis nematodes were recovered. The isolated Heterorhabditis nematodes were molecularly, and morphologically characterized, and their biocontrol potential was evaluated against Spodoptera litura. Finally, the geographical distribution of entomopathogenic nematodes was studied based on the analysis of ITS GenBank records.
Results
A small proportion of the collected soil samples were positive for Heterorhabditis and Steinernema nematodes. Twelve soil samples were positive for the presence of Heterorhabditis nematodes, and 29 samples were positive for Steinernema. The Heterorhabditis nematodes were identified as Heterorhabditis indica based on morphological, morphometrical and molecular analyses. No other species of Heterorhabditis were isolated from the soil samples analyzed, suggesting that this species is dominant in the western part of Uttar Pradesh, India. The morphology of the nematode isolates was somewhat similar to the morphology of the H. indica isolate used for the original description of this species, with a notable exception mucrons were present in the hermaphrodite and female specimens we collected, but this structure was not observed in the specimens used for the original description of the species. Principal component analyses (PCA) show small inter- and intraspecific morphological variability between the nematodes species of the “Indica” clade. The insecticide properties of one isolate, CH7, were evaluated against Spodoptera litura, and the results show that this isolate effectively killed this pest under laboratory conditions, demonstrating its potential as a biocontrol agent.
Conclusion
This study sets the basis for establishing new biocontrol agents to be used in future pest management programs in India.
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Introduction
Entomopathogenic nematodes (EPNs) of the families Steinernematidae and Heterorhabditidae are lethal parasites of insects [33]. Nematode species from these two families are of great interest to the scientific community, because of their biocontrol attributes [32, 33, 42]. The only free-living and infective stage is the third-stage juvenile, which is associated with symbiotic bacteria, that are found throughout the alimentary canal of Heterorhabditis species [30] but compartmentalized in specialized structures in Steinernema species [17, 52]. Different formulations of these nematodes are used for safeguarding crops and forests from insect attack [75], and are currently important bio-pesticides in integrated pest mangament (IPM) programs. To maximize their biocontrol potential, the use of locally adapted isolates is though to be more suitable, as local nematodes might exhibit better performance under particular abiotic and biotic conditions than alien nematode isolates [14, 15].
The genus Heterorhabditis is less speciose than Steinernema, with only 16 species of the former and 100 species of the latter that have been identified and described [9, 38]. The genus Heterorhabditis is “circumtropical”, or “widely distributed in equatorial and subequatorial areas”. India is a mega-diverse country and has diverse niches and habitats due to its varied climatic zones and different edaphic conditions, but information on the influence of these factors on EPNs and related diversity is limited. Only three Heterorhabditis species and 17 Steinernema species have been isolated and reported from Indian soils [13, 14].
Spodoptera litura (Lepidoptera: Noctuidae) (Fabricius 1775) causes great losses to many economically important crops [15, 22, 64]. This destructive pest is widespread in almost all Indian states and has frequently been reported to cause widespread damage to soybean (Glycine max L.) crops (26–29%) and groundnut (Arachis hypogaea L.) (27.3%) at several localities in India [23, 26, 27]. Recent outbreaks of S. litura on soybean in Kota (Rajasthan state), and Marathwada and Vidarbha (Maharashtra state) regions of India have been reported to cause monetary losses of USD 45 million and USD 225 million, respectively [26]. To control this pest, various chemical pesticides are frequently used, but this insect species has evolved resistance to many chemical insecticides particularly pyrethroids and carbamates [5, 39, 43] and has low susceptibility to transgenic Bt cotton [87], increasing its pest significance due to the difficulty to control it. Therefore, control of this and other harmful insects using effective indigenous biocontrol agents such as entomopathogenic nematodes is a promising alternative. In this study, local entomopathogenic Heterorhabditis nematodes were isolated, identified and their biocontrol potential evaluated. The aims of the study were: (1) to isolate Heterorhabditis spp. from agricultural soils of Meerut, India; (2) to identify the isolated nematodes using morphological and molecular techniques; (3) to investigate morphological variations among Heterorhabditis from agricultural soils of Meerut, India using principal component analysis (PCA); and (4) to investigate the biocontrol potential of some of the isolated Heterorhabditis spp.
Materials and Methods
Nematode sampling and trapping
A total of 860 soil samples were collected from agricultural fields of Western Uttar Pradesh, India. Samples were collected from the district Meerut (28° 59′ N, 77° 42′ E, 225 m above sea level (m.a.s.l.), 397 samples), Bulandshahr (28° 41′ N, 77° 85′ E, 209 m.a.s.l., 197 samples), Baghpat (28° 94′ N and 77° 23′ E and 223 m.a.s.l., 164 samples) and Bijnor (29° 37′ N and 78° 38′ E and 237 m.a.s.l., 102 samples). Each sample contained 1 kg of soil, which was a mixture of five soil subsamples collected at five locations within each agricultural field (one sample from each corner of the field, and one from the center of the field). Samples were collected at 15–20 cm depth. Samples were analyzed to determine the presence of EPNs by the soil baiting technique [8]. Ten 3rd instart Galleria mellonella (Lepidoptera: Pyralidae) larvae were buried in 250-ml plastic containers containing 250 g of fine soil, covered with muslin cloth and stored in an incubator at 28 ± 2 °C for 7 days. Containers were inspected daily to recover nematode infested insect cadavers, rinsed with distilled water, disinfected with 0.1% sodium hypochlorite (NaOCL) solution and transferred to modified White traps [88] to obtain emerging infective juveniles (IJs). White traps were incubated in an incubator at 28 ± 2 °C and checked daily for the emergence of IJs from the cadavers. Emergence started after 5–7 days and the emerged IJs migrate to water surrounding the petri-dish. Nematode were collected regularly until nematode emergence ceased after 10–20 days [40].
Morphology and morphometry
Infective juveniles (IJs) were surface sterilized with a 1% NaOCl solution. Fifteen Galleria mellonella larvae were infected with 100 IJs each in sterile Petri dishes. To recover first- and second-generation adults, larvae were dissected 3–4 days or 5–7 days after infection, respectively; while IJs were recovered from White traps as described above [88]. The different nematode generations were killed in hot water, fixed in TAF (7-ml formalin, 2-ml triethanolamine, 91-ml distilled water) [25], dehydrated using the Seinhorst method and mounted in a small drop of glycerin [70, 82]. Nematode morphological features were observed using a light compound microscope (Magnus MLX) and a phase-contrast microscope (Nikon Eclipse 50i). Twenty adults of each generation and 20 IJs were analyzed. The measurements were carried out with the help of the inbuilt software of Nikon Eclipse 50i (Nikon DS-L1).
Various morphometric traits obtained from fixed nematodes, including body length, a, b, c, excretory pore, nerve ring to anterior end, pharynx length, tail length, anal body diameter, spicule length, gubernaculum length, D%, SW%, GS% and greatest body diameter, were used for PCA analysis of the IJs and adult generations (Table 2). The characters used for male-based PCAs were: L, a, b, c, mid-body diameter, excretory pore to anterior end (EP), nerve ring to anterior end (NR), pharynx length (PS), tail length (T), anal body diameter (ABD), D%, spicule length (SL), gubernaculum length (GL), SW% and GS%. The characters for the female-based PCAs were: L, a, b, c, V%, mid-body diameter, excretory pore to anterior end (EP), nerve ring to anterior end (NR), pharynx length (PS), tail length (T), anal body diameter (ABD), D% and E%. The characters for the IJ-based PCAs were: L, a, b, c, mid-body diameter, excretory pore to anterior end (EP), nerve ring to anterior end (NR), pharynx length (PS), tail length (T), anal body diameter (ABD), D% and E%.
To evaluate the morphological variations between the nematodes isolated in this study and nematodes of other closely related species, a principal component analysis (PCA) with different morphological traits was conducted. PCA analysis was carried out in XLSTAT [4]. Values are shown as mean ± SD. The morphometric measurements of original populations of species of the Indica clade [80] were taken from their original descriptions. The measures were normalized through XLSTA software prior to their analysis [4]. The scores values were determined for each isolate based on each of the principal components, and the scores for the first two components were used to form a two-dimensional plot (PC1 and PC2) of each isolate based on eigenvalues given by the software XLSTAT.
Molecular identification
The genomic DNA was extracted from infective juveniles using DNeasy Blood and Tissue Kit (Germany) following manufacture’s indications with some modifications. Internal transcribed spacer (ITS) regions of rDNA were amplified using primers 18S: 5′-TTGATTACGTCCCTGCCCTTT-3′ (forward) and 28S: 5′-TTTCACTCGCCGTTACTAAGG-3′ (reverse) [86] and partial sequence of 28S gene, D2–D3 domains were amplified using primers D2F: 5 ́-CCTTAGTAACGGCGAGTGAAA-3 ́ (forward) and 536: 5 ́-CAGCTATCCTGAGGAAAC-3 ́ (reverse) [54]. The PCR master mix consisted of nuclease-free dH2O 16.8 μl, 10 × PCR buffer 2.5 μl, dNTP mix (10 mM each) 0.5 μl, 1 μl of each forward and reverse primers, dream taq DNA polymerase 0.2 μl, and 3 μl of DNA extract. The PCR profiles used was: 1 cycle of 94 °C for 3 min followed by 40 cycles of 94 °C for 30 s, 55 °C for 30 s for ITS rDNA or 52 °C for 30 s for 28S rDNA, 72 °C for 60 s, and a final extension at 72 °C for 10 min [65, 10]. The ITS and D2D3 rDNA sequences were sequenced and finally deposited in the NCBI databank (Table 1). The phylogenetic trees based on the ITS and 28S rRNA gene sequences were obtained by the minimum evolution method [67] in MEGA 7.0 [44]. Caenorhabditis elegans was chosen as out-group taxa and to root the trees.
Isolation and molecular characterization of entomopathogenic bacteria
The symbiotic bacteria associated with Heterorhabditis indica CH7 was obtained by crushing 500 surface-sterilized IJs in 1-ml PBS buffer (8-g NaCl, 0.2-g KCl, 1.15-g Na2HPO4, 0.2-g KH2PO4). 100 µl of the resulting suspension was spread on nutrient agar supplemented with 0.004% (w/v) triphenyltetrazolium chloride and 0.0025% (w/v) bromothymol blue (NBTA medium) and left overnight at 28 °C [6]. Single colonies were transferred with a sterile toothpick to Luria broth [6] and cultivated in liquid media with an orbital shake (180 rpm) at 27 °C. Bacterial DNA was extracted from a 2-day-old culture using DNeasy Blood and Tissue Kit (QIAGEN, Hilden, Germany) according to the manufacturer’s instructions. 16S rRNA gene was amplified using primers 10F: 5′-AGTTTGATCATGGCTCAGATTG-3′ (forward) and 1507R: 5′-TACCTTGTTACGACTTCACCCCAG-3′ (reverse) [68]. The PCR master mix consisted of nuclease-free H2O 16.8 µl, bovine serum albumin 1 µl, 10 × dream Taq buffer 2.5 µl, dNTPs mix (10 mM) 0.5 µl, 0.75 µl of each forward and reverse primers, dream Taq DNA polymerase 0.2 µl and 2 µl of DNA [11]. The PCR profile was: one cycle at 94 °C for 3 min followed by 33 cycles at 94 °C for 60 s, 55 °C for 60 s, 72 °C for 2 min, and a final extension at 72 °C for 10 min [12]. All PCR products were sequenced and deposited in the GenBank under the MK559716 accession number. Bacteria 16S rRNA gene sequences were aligned with sequences of other Photorhabdus species [49, 50] using default Clustal W parameters in MEGA 7.0 [44]. The evolutionary history was inferred using the Maximum Likelihood method based on the Hasegawa–Kishino–Yano model [36]. The tree with the highest log likelihood ( – 3288.79 is shown. The percentage of trees in which the associated taxa clustered together is shown next to the branches. Initial trees for the heuristic search were obtained automatically by applying Neighbor-Join and BioNJ algorithms to a matrix of pairwise distances estimated using the Maximum Composite Likelihood (MCL approach, and then selecting the topology with superior log likelihood value. A discrete Gamma distribution was used to model evolutionary rate differences among sites (5 categories (+ G, parameter = 0.4633. The rate variation model allowed for some sites to be evolutionarily invariable ([+ I], 81.52% sites. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. Evolutionary analyses were conducted in MEGA7 [44].
Phenotypic and biochemical characterization of symbiotic bacteria
Phenotypic variations were observed in symbiotic bacteria on the basis of adsorption properties towards bromothymol blue (BTB) and neutral red. The adsorption of BTB was examined on NBTA agar [6] and neutral red adsorption on MacConkey agar and were incubated for 24–48 h at 28 °C. The biochemical characterization was examined using a KB003 Hi25 Enterobacteriaceae Identification Kit from Hi-media (Mumbia, India), designed for the identification of Gram-negative Enterobacteriaceae species. A total of 13 conventional biochemical tests and 11 carbohydrate utilization tests were performed using this kit. For biochemical characterization, bacteria were cultured on NBTA media and blue–green colonies were transferred into 5-ml heart infusion broth (Hi-media). The culture was grown overnight and 50-μl aliquots were then inoculated into each of the 24 wells of the kit. The kit was incubated according to the manufacturer’s instructions and changes in the color of media were recorded as positive or negative reactions as indicated by the manufacturer.
Geographical distribution
The ITS sequence was selected for the analysis, as it enables a clear distinction of the species in heterorhabditids, unlike another frequently sequenced markers as the D2D3 region of the 28S rDNA. To find H. indica sequences, the BLAST search was performed with the sequence of the type isolate (AY321483) as a query. The sequences that showed 97% or higher similarity scores were downloaded and their taxonomic identity was confirmed by phylogenetic analysis. The information about the site of isolation, if available, were obtained from the NCBI GenBank database, or related publications.
Virulence and reproduction on Spodoptera litura
The virulence of Heterorhabditis isolate CH7 was evaluated on fourth instar S. litura larvae. Spotoptera litura were originally purchased from ICAR- National Bureau of Agriculturally Important Insects (NBAII), Bangalore (National accession no. NBAII-MP-NOC-02) in March, 2018 and were artificially reared in the laboratory on castor leaves (Ricinus communis). Larvae of similar size and weight were used.
Infectivity experiments were carried in six-well plates (Tarson, India) (well size 3.5 cm). Each well was lined with a double-layered Whatman filter paper no. 1. One-week-old IJs were used in all experiments [15]. Four concentrations: 25, 50, 100 and 200 IJs were suspended in 450-µl distilled water and inoculated onto the filter paper. Controls received water only. Ten, fourth instar larvae of similar size and similar weight for each nematode concentration were used (n = 10). Experiments were repeated twice. Plates were incubated at 28 ± 2 °C and larval mortality was recorded every 12 h until all insects died. Ten larvae infected with 25, 50, 100 and 200 IJs/larva were transferred after seven days to modified White traps [88] to observe the persistence of infection and emergence of IJs (18–20 days). Larval mortality assay was analyzed statistically through probit analysis using SPSS software and LC50 values were calculated at a 95% confidence limit. Differences between percent mortalities, depending on the isolates, were assessed further using analysis of variance. Data were presented as percentage ± SD. The total number of IJs/larva of the studied nematodes was modeled by a quadratic regression and 95% confidence intervals were calculated in SigmaPlot 14.0.
Results and Discussion
In this study, a total of eight hundred and sixty soil samples from several districts of the western Uttar Pradesh (India) were collected and examined for the presence of entomopathogenic nematodes. A total of 41 nematode isolates were recovered from those soil samples: 29 Steinernema spp. and 12 Heterorhabditis spp. Here, the molecular and morphological characterization of the Heterorhabditis isolates is reported (Table 1). The characterization of the Steinernema isolates is reported somewhere else [13, 14, 15, 16]. The pH of the soil where nematodes were isolated ranged from 5.8 to 9.6., and were mainly sandy loam and alluvial and the climate in these areas is mainly warm and temperate to humid subtropical with dry winters. Mounted slides and live specimens were deposited in the Nematology Laboratory of Department of Zoology, Chaudhary Charan Singh University, Meerut, India. Currently, only isolate CH7 is available as living specimens, all others were unfortunately lost.
Morphology and morphometry
The twelve Heterorhabditis isolates obtained during the present survey of agricultural soils were identified as H. indica. The morphology of the specimens isolated showed high resemblance with the specimens used for the original description of the species. Notably, the presence of mucrons in the hermaphrodite and amphimictic female specimens of this study (Fig. 1a and b) was observed, which was not the case in the adults used for the original description of the species. This mucron was, however, observed in synonymised species, such as Heterorhabditis pakistanense (syn. H. indica, Hunt and Subbotin [38]). The anal swelling of nematodes isolated during this study was very prominent in both hermaphroditic and amphimictic females (Fig. 1a and b); while in the specimens used for the original species descriptions, it was more prominent in hermaphroditic females than in amphimictic females. The rest of the morphological features were very similar between the nematodes isolated in this study and the nematodes used for the original description of the species. The morphometrical measurements of all the generations of the present heterorhabditid isolates were similar to the original population of H. indica [63], but some variations were observed when they were compared with each other or with the original description. A comparison in morphometric parameters in all generations is shown in Table 2.
PCA analysis
PCA results show morphometric variation between the hermaphroditic females, males and IJs of the twelve H. indica nematode isolates from this study, and the different developmental stages of nematodes that belong to the original population of H. indica and the other six described species of the Indica clade [80] namely: Heterorhabditis noenieputensis [51], Heterorhabditis amazonensis [7], Heterorhabditis baujardi [61], Heterorhabditis taysearae [74], Heterorhabditis mexicana [58], and Heterorhabditis floridensis [57]. The analyzed morphological characters allowed a clear separation between the different nematode isolates of this study: the 12 isolates used in this study and the type population of H. indica, and other species of the Indica clade (Fig. 2a–c).
An accumulated variability of 62.83% was observed in the IJ-based PCA. In this study, the contribution of PC1 observed was 43.05%, and of the PC2 was 19.78% (Fig. 2a; Table 3). Two parameters: ratio c (r = 0. 889) and E% (r = 0.942) were positively correlated across nematode isolates/species. On the contrary, three parameters: anterior end to excretory pore (r = – 0.771), nerve ring to anterior end (r = – 0.689) and tail length (r = – 0.725) were negatively correlated across nematode isolates/species. Moreover, eight morphometric characters out of twelve were positively correlated across isolates and the rest displayed a negative coefficient of correlation (Fig. 2a). The highest coefficient of correlation with PC2 was observed in pharynx length (r = 0.937) (Table 3).
An accumulated variability of 55.83% was observed in the hermaphroditic female-based PCA. Specifically, the contribution of PC1 observed was 35.99%, and of PC2 was 19.84% (Fig. 2b; Table 3). Eleven out of thirteen morphometric characters were positively correlated across nematode isolates/species, except D% (r = – 0.114) and V (r = – 0.309) (Fig. 2b). Body length (r = 0.951) had the highest coefficient of correlation within the PC1 (Fig. 2b). Regarding the PC2, six characters were positively correlated and the remaining six were negatively correlated. The c ratio exhibitted the highest coefficient of correlation (r = 0.904) (Table 3).
An accumulated variability of 49.78% was observed in the male-based PCA. In this case, it was observed that the contribution of the PC1 was 27.35%, and of the PC2 component was 22.34%. Among the fifteen morphometric variables, eight were positively correlated and seven were negatively correlated (Fig. 2c). Spicule length (r = 0.598) and SW% (r = 0.880) exhibit the highest correlation of coefficient within the PC1 (Fig. 4). In the case of PC2, all characters except c ratio (r = – 0.249) and SW% (r = – 0.141) were negatively correlated (Table 3).
It was observed in the PCAs that some nematodes isolates grouped together, but we did not observe the same groups in all the PCAs, or on nematodes isolated from the same regions. These results indicate that there is intraspecific morphological variation across nematode isolates, and it does not depend on the nematode developmental stage or sampling location (Table 1; Fig. 2a–c). Additionally, a clear separation between species/isolates was not observed, which indicates that the nematodes that belong to the Indica clade are morphologically very similar. Several studies have observed large intraspecific morphological variability across nematode isolates, which is consistent with our findings [1, 2, 20, 29]. Many external factors as food source, climate conditions, and environmental toxins cause morphometric variation in nematodes. Recently, for instance, studies found large variations in the morphology of Steirnenema feltiae nematodes upon exposure to cucurbitacin-containing phytonematicides, which was explained as morphological adjustments to avoiding hydrostatic pressure damage in the pseudocoelom [53].
Molecular characterization
ITS sequences of the 12 Indian Heterorhabditis indica isolates (CH7–CH15, CH17, CH19 and CH20) isolated in this study showed two nucleotide differences with the sequences of the topotype population of H. indica (NCBI accession number: AY321483) at position 331 (g.331 T > A), and at position 663 (g.663delT) (Supplementary Fig. 1). The ITS rDNA sequences of present isolates of H. indica are separated from those of other described Heterorhabditis species by 10–197 bp. No sign of intra-individual variability in the ITS rRNA gene sequence was observed. Regarding the D2/D3 region of the 28S rRNA gene sequence, no differences were observed. The D2 and D3 expansion fragments of the 28S rRNA gene sequence of all the nematode isolates isolated in this study were separated by 2–55 bp from other described Heterorhabditis species.
Phylogenetic analysis
The ITS rRNA gene sequence-based phylogenetic analyses of all Heterorhabditis species show that the present 12 nematode isolates form a monophyletic clade with the originally described H. indica, thus confirming their taxonomic identity (Fig. 3). Sequences of H. indica formed a monophyletic group with other members of the Indica clade: Heterorhabditis noenieputensis Malan, Knoetze and Tiedt [51], Heterorhabditis amazonensis Andaló, Nguyen and Moino [7], Heterorhabditis baujardi Phan, Subbotin, Nguyen and Moens [61], Heterorhabditis floridensis Nguyen, Gozel, Köppenhöfer & Adams [57] and Heterorhabditis mexicana Nguyen, Shapiro-Ilan, Stuart, Mccoy, James and Adams [58] and together formed a sister clade with the members of the Bacteriophora clade and Megidis clade (Fig. 3). Similar results were observed in D2/D3-based phylogeny. The nematode isolates from this study formed a monophyletic group with H. indica. In turn, H. indica forms a monophyletic group with all described members of the Indica clade and together formed a sister clade with the members of the Bacteriophora clade and the Megidis clade (Fig. 4). Thus, based on the phylogenetic reconstruction of ITS and D2/D3 sequences, the 12 Heterorhabditis isolates belong to the nematode species H.indica.
Symbiont bacteria: phenotypical, biochemical and molecular diagnosis
Bacteria isolated from H. indica CH7 are Gram-negative rods. On nutrient agar, colonies have a brownish pigmented center, appear shiny and opaque, and are circular to irregular and convex. Phase I colonies adsorb neutral red, forming red colonies on MacConkey agar, and adsorb bromothymol blue, forming blue colonies on NBTA agar plates [6]. They are motile and catalase positive, facultatively anaerobic, utilized citrate and used myo-inositol in low concentration. Saccharose was weakly hydrolyzed. Urease, oxidase and nitrate reduction were positively assimilated (Table 4). Mostly negative for KB003 Hi25 Enterobacteriaceae Identification Kit of Hi-media tests (Table 4). Bioluminescence, as assessed by observation in the dark, was visible in 3–6-day cultures of the primary forms of the symbiotic bacteria of H. indica CH7.
Based on the 16S rRNA gene sequences, the bacterial isolate CH7 is closely related to Photorhabdus akhurstii (Fischer-Le Saux et al. 1999) [50] and share 98.6% sequence similarity. Phylogenetic relationship reconstructions confirm this observations and suggest that the bacterial isolate CH7 belongs to the Photorhabdus akhurstii species (Fig. 5). Given the observed ITS sequence similarity scores (98.6%), it might be that CH7 bacteria constitute a different subspecies within Photorhabdus akhurstii. Full genome sequences are required to confirm this hypothesis [49, 50].
Geographic distribution of species of the Indica clade
The specimens of H. indica used to describe the species were collected in Tamil Nadu, India and the description was based only on morphology and morphometry, but not on a molecular data. Using the NCBI database, we found that H. indica isolates have also been isolated from the USA (15), Pakistan (14), India (110), Thialand (59), China (9), Nepal (7), Switzerland (9), Vietnam (3), Brazil (3), Benin (4), Lebanon (2), Egypt (10), South Africa (2), Czech Republic (1), Mexico (2), Philippines (1), Turkey (2), Peru (3), France (1), Taiwan (6), Ireland (1) and Palestine (2) (Supplementary Table 1a). The majority of isolates have been recovered from Thailand (59) and India (110). Based on the NCBI GenBank records, the species seems to be widespread in India as it has been isolated from 9 states throughout the country. In South India, it has been reported from Karnataka (7), Kerala (2), Tamil Nadu (39), Telangana (3), and Maharashtra (11). In North India, it has been reported from Uttar Pradesh (38). From the North West of India, it has been reported in Haryana (2) and Gujarat (1) and from the North East of the country, it has been reported in Mizoram (6) (Supplementary Table 1a). The number of the sequences in GenBank from a particular region reflects not only the abundance of the organism within the area, but also the actual sampling effort. However, the species seems to be present in almost all continents except Australia and Antarctica, but widely spread throughout the Indian subcontinent. In India, two other species of Heterorhabditis have been reported, H. bacteriophora from Kashmir, Tamil Naidu and Haryana [11, 77] and H. baujardi from Mizoram [84]. No other species of Heterorhabditis have been reported from India till date. Heterorhabditis indica is the most prevalent species of the Heterorhabditis genus in India followed by H. bacteriophora, while most of the other species are apparently endemic. For instance, H. beicherriana has been reported only from China, H. georgiana and H. floridensis from USA, H. noenieputensis and H. safricana from South Africa, H. amazonensis from Brazil, and H. atacamensis from Chile. This distribution may perhaps be related to distribution of suitable insect hosts, soil temperature and moisture, pH, oxygen, soil texture, soil type, crops and to the species of nematode involved [45, 46, 66]. It is also surprising that in the present study only H. indica, was isolated and no other Heterorhabditis species, in spite of the relatively high number of sampled soils. A potential explanation is that H. indica might be a strong intraspecific competitor and could supress other Heterorhabditis species. Soil metagenomic studies might answer this question.
Heterorhabditis indica was the first species of the genus recorded from India [63]. Since then, various surveys showed that H. indica is the most predominant species of Heterorhabditis in India and is found in almost all the geographical parts of the country [79]. The abundance of H. indica is obvious in comparison with other species of the heterorhabditid group (Supplementary Table 1b). In the NCBI GenBank database, there are more than 266 records for H. indica. Other closely related species have less frequently been reported. A possible explaination for this observation might be that H. indica nematodes are able to survive in different habitats and are less affected by changes in abiotic conditions [21, 24, 81]. This distribution pattern suggests that dispersal mechanisms can be highly effective and probably occur by a combination of active and passive dissemination mechanisms [3].
Pathogenicity tests
Laboratory pathogenicity tests showed that H. indica isolate CH7 is highly pathogenic against Spodoptera litura (Fig. 6). Heterorhabditis indica CH7 killed 100% of the tested hosts even at very low IJ concentrations within 48 h. The nematode dose required to kill 50% of the insect host (LD50) within 24 h is 159.48, while only 24.27 nematodes are required to kill the same number of insects within 36 h, demonstrating the high killing capacity of this nematode isolate (Fig. 6). Using similar amount of nematodes, S. pakistanense and S. abbasi killed 100% of S. litura larvae within 48–192 h, suggesting that isolate CH7 is more effective [13, 41]. Differences in virulence against these pests might be explained by nematode adaptations to specific hosts [15, 41, 76]. In addition, many other factors can explain these results, such as the rate of penetration, reproductive potential, type of bacterial symbiont carried by the nematode, doses applied and several other biotic and abiotic factors [31, 35, 42]. The reproductive potential of isolate CH7 is also very high (Fig. 7). It was observed that the number of emerging IJs is optimal when 100 IJs/larva were used to infect S. litura larva (Fig. 7). Susurluk and Ehlers (2008) also observed highest nematode reproduction ouput at doses of 100 IJs/larva. The present result was also in accordance with Selvan et al. [71] who observed that the production of IJs of H. bacteriophora increased with increasing the initial nematode dose up to approximately 100 IJs/larva and suggested that decrease in production rate at high inoculum level is due to an instraspecific competition.
In conclusion, H. indica is the dominant Heterorhabditis species in agricultural soils of the Western Uttar Pradesh districts in India. Morphological traits might provide little information to determine their taxonomic position, as there is large intra- and inter-specific variation. Molecular indentification tools are, therefore, recommended for future studies. Heterorhabditis indica isolate CH7 show great potential to control S. litura larvae under laboratory conditions and, therefore, future efforts should be focused to evaluate its virulence and pathogenicity against different agricultural pests throughout the country under field conditions. This may lead to incorporate isolate CH7 as a regular biological control agent in integrated pest management programs in the future.
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Acknowledgements
The authors thank the Head of the Department of Zoology for providing necessary laboratory facilities. Thanks also goes to Suman Bhargava for assisting in reference setting according to journal format.
Funding
AHB is thankful to the Department of Science and Technology for providing DST Inspire Fellowship/2014/76. The work of RARM is supported by the Swiss National Science Fundation (PZ00P3_186094).
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Bhat, A.H., Chaubey, A.K., Shokoohi, E. et al. Molecular and Phenotypic Characterization of Heterorhabditis indica (Nematoda: Rhabditida) Nematodes Isolated During a Survey of Agricultural Soils in Western Uttar Pradesh, India. Acta Parasit. 66, 236–252 (2021). https://doi.org/10.1007/s11686-020-00279-y
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DOI: https://doi.org/10.1007/s11686-020-00279-y