Abstract
In advanced water treatment processes, the degradation efficiency of contaminants depends on the reactivity of the hydroxyl radical toward a target micropollutant. The present study predicts the hydroxyl radical rate constant in water (k OH) for 118 emerging micropollutants, by means of quantitative structure-property relationships (QSPR). The conformation-independent QSPR approach is employed, together with a large number of 15,251 molecular descriptors derived with the PaDEL, Epi Suite, and Mold2 freewares. The best multivariable linear regression (MLR) models are found with the replacement method variable subset selection technique. The proposed five-descriptor model has the following statistics for the training set: \( {R}_{\mathrm{train}}^2=0.88 \), RMS train = 0.21, while for the test set is \( {R}_{\mathrm{test}}^2=0.87 \), RMS test = 0.11. This QSPR serves as a rational guide for predicting oxidation processes of micropollutants.
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Introduction
Determining the presence of organic micropollutants in the aquatic environment at the low-nanogram per liter level is considered of great concern, as the risk these compounds have on the environment and human health is still inconclusive (Luo et al. 2014; Sudhakaran et al. 2012).
Although conventional treatment processes have observed insufficient removals of many micropollutants from drinking water, advanced technologies have shown great abilities to degrade or remove many of these micropollutants. In particular, hydroxyl radical-based advanced oxidation processes (AOPs) are effective means for degrading micropollutants during drinking water treatment (Bagheri and Mohseni 2015; Jin et al. 2012). Hydroxyl radicals react relatively non-selectively with organic contaminants (Sudhakaran and Amy 2013) and can be generated by various combinations of reactants such as UV/H2O2, O3/H2O2, Fenton/photo-Fenton, and UV/TiO2.
During oxidative water treatments, the transformation efficiency of micropollutants depends on the reactivity of the hydroxyl radical toward a target micropollutant. Therefore, rate constants are needed to predict the extension to which micropollutants are degraded after a specified treatment duration (Jin et al. 2012; Lee and Gunten 2012). Nowadays, kinetic data are available for a large number of compounds for the reaction with hydroxyl radicals (Buxton et al. 1988). However, due to the complexity of analytical methods and the high experimentation cost, there is still a gap for kinetic data of emerging micropollutants (Jin et al. 2012; Sudhakaran et al. 2012).
Predictive models from the quantitative structure-property relationships (QSPR) theory (Benfenati 2013; Hansch and Leo 1995; Puzyn et al. 2010; Roy 2015) are a fast and cost-effective alternative to experimental evaluation. By means of the QSPR technique, an experimental property of a chemical compound, i.e., the reaction rate constant with hydroxyl radical (k OH), can be predicted through the knowledge of its chemical structure. The structure is quantified by means of a set of suitable molecular descriptors, in other words, numerical quantities carrying specific information on the constitutional, topological, geometrical, hydrophobic, and/or electronic aspects (Diudea 2001; Katritzky and Goordeva 1993; Todeschini and Consonni 2009). Therefore, a set of descriptors is statistically correlated to the experimental property, resulting in a mathematical model that can be used to find out useful structure-property parallelisms.
The application of the QSPR theory to water treatment studies is relatively new, and only a few QSPR models have been proposed using different approaches for ozonation, chlorination, AOPs, membrane filtration, and activated carbon adsorption (Borhani et al. 2016; Delgado et al. 2012). In some k OH modeling studies of organic compounds, Hammett-type relationships have been applied; the main disadvantage of such method is only applicable to substituted aromatic compounds with known substituent constants (Lee and von Gunten 2012; Peres et al. 2010; Zimbron and Reardon 2005). A few QSPR studies based on descriptor selection techniques involve advanced statistical methods, like principal component analysis (PCA) and genetic algorithms (Kusic et al. 2009; Sudhakaran and Amy 2013; Toropov et al. 2012). The application of group contribution methods for k OH prediction (Minakata et al. 2009; Monod and Doussin 2008) faces the problem of availability of data for all possible functional groups and the assumption of additivity of rate constants. All such established QSPR would not be specific to the new emerging micropollutants having diverse molecular structures.
In a recent QSPR study reported by Jin et al. (Jin et al. 2015), the authors predict the reaction rate constant with hydroxyl radical (k OH) in water of 118 emerging micropollutants, composed of endocrine disruptor chemicals (EDCs) and pharmaceuticals and personal care products (PPCPs). A special attention is paid on model validation, applicability domain analysis, and mechanistic interpretation. The dataset is randomly split into a training set of 89 compounds for model calibration and a validation set with 29 compounds for testing its predictive capability. The multivariable linear regression (MLR) method analyzes 951 0D-3D Dragon molecular descriptors through the forward stepwise procedure. The best QSPR established includes seven descriptors related to the electronegativity, polarizability, and double bonds of the compounds. With outliers identified and removed, the final model fits the training set very well and shows good robustness and internal predictivity.
In this work, we report a new alternative QSPR model for the k OH parameter in the same molecular set studied by Jin et al. (2015), however, using the conformation-independent QSPR approach which does not consider the conformational representation of the chemical structure, by only relying on its constitutional and topological representations. It is to be noticed that this method cannot be defined as “geometry independent,” because also the 2D descriptors used depend on the geometry (the molecular graph), not on the conformation: the two concepts are different.
The conformation-independent QSPR approach emerges as an important alternative methodology where the conformational representation of the chemical compounds is not considered (Aranda et al. 2016; Duchowicz et al. 2014; Duchowicz et al. 2012; Duchowicz et al. 2015). Therefore, neither experimental information on the X-ray crystal structure of the compound conformations is required nor the geometry optimization calculation of their molecular structure. The exclusion of such 3D-structural aspects avoids ambiguities due to the existence of compounds in various conformational states, which would also lead to the loss of predictive capability of the QSPR model.
Materials and methods
Experimental dataset
The 118 experimental k OH [M−1s−1] values of emerging micropollutants collected from the literature (Jin et al. 2015) range in the interval (5.4 107, 1.7 1010) and for modeling purposes are converted into decimal logarithmic units (logk OH). The micropollutants include many EDCs and PPCPs and are highly heterogeneous with different chemical classes, such as phenols, polycyclic aromatic hydrocarbons, alkanes, halogenated aromatic compounds, and organophosphorus compounds. The complete list of compounds studied here appear in Table 1S as Supplementary material.
Structural representation and molecular descriptor calculation
The molecules are drawn in MDL mol (V2000) format with ACDLabs ChemSketch freeware (2016). All file format conversions are performed with Open Babel for Windows (2016).
The conformation-independent molecular descriptors are computed as follows. First of all, we use the Pharmaceutical Data Exploration Laboratory (PaDEL) freeware version 2.20 (2016), because it has the advantage that it is a freely available and open source program. PaDEL allows us to calculate 1444 0D-2D descriptors and nine fingerprint types (13,020 bits) (Yap 2011), with molecules in MDL mol (V2000) format. Additional molecular descriptors are also calculated with the molecular descriptors from 2D structures (Mold2) freeware (Hong et al. 2008), which generates 779 1D and 2D structural variables with molecules in MDL sdf format. Finally, eight semiempirical descriptors are calculated (in decimal logarithmic units) from the Estimation Program Interface (EPI Suite 4.11, 2016) freeware modules, with molecules in SMILES format. EPI Suite uses a series of group contribution factors for calculating: (i) the octanol/water partition coefficient logK ow EPI; (ii) the water solubilities logS w1 EPI and logS w2 EPI: the second parameter is based on logK ow EPI; (iii) the Henry’s law constant at 25 °C logK H EPI; (iv) the soil sorption partition coefficients logK oc1 and logK oc2: the first parameter is based on the first order molecular connectivity index, while the second one is based on logK ow EPI; (v) the octanol-air partition coefficient logK oa, based on the ratio K ow EPI and the dimensionless K H EPI; and (vi) the bioconcentration factor logBCF.
Therefore, the total number of non-conformational molecular descriptors explored in this work is 15,251. It is our intention to capture, with such a great number of descriptors, the most relevant structural characteristics affecting the studied property.
Model development
Molecular descriptor selection in MLR
The 15,251 non-conformational molecular descriptors calculated with PaDEL, Mold2, and EPI Suite are analyzed in order to remove the “collinear” descriptors, that is to say, the linearly dependent pairs are identified, and only one variable from each pair is kept for further analysis. This process leads to a set containing 2899 linearly independent 0D-2D descriptors.
We employ the replacement method (RM) technique (Duchowicz et al. 2006) in order to generate MLR models on the training set, by searching in a pool having D = 2899 descriptors for optimal subsets containing d descriptors (d is much lower than D), with smallest values for the standard deviation (S train) or the root mean square error (RMS train).
The main idea behind the RM is that one can approach the minimum of S train by judiciously taking into account the relative errors of the coefficients of the least-squares model given by a set of d descriptors. In other words, we should find the global minimum of S train(d) in a subspace of D ! /[d ! (D − d)!] points d, where D represents the total number of available descriptors. The quality of the results achieved with this technique approaches that obtained by performing an exact (combinatorial) full search of molecular descriptors although, of course, requires much less computational work. This technique has been shown to compare favorably with the genetic algorithm approach (Morales et al. 2006).
Table 2S includes a list of mathematical equations involved in the present study. All the MATLAB-programmed (Matlab 7.6.0.324, 2008) algorithms used in our calculations are available upon request.
Model validation
The best choice for validating a QSPR model consists on testing its ability to predict the property of compounds not considered during the model development, by comparing such predictions with the experimental values. For this purpose, the complete molecular set is split into training (train) and test (test) sets. The training set is used to calibrate the model and to obtain its optimized parameters, while the test set includes compounds “never seen” during the calibration and demonstrates the true predictive power.
It is known that randomly splitting the compounds into the training and test sets does not lead to a rational selection, as such sets should have similar structure-property relationships. For this purpose, the split of the dataset is carried out by means of the balanced subset method (BSM) (Rojas et al. 2015); a procedure developed in our group that ensures that the training set is representative of the test set. The BSM is based on the k-means cluster analysis (k-MCA) method (Kaufman and Rousseeuw 2005): the essence of k-MCA is to create k-clusters or groups of compounds, in such a way that compounds in the same cluster are very similar in terms of distance metrics (i.e., Euclidean distance), and compounds in different clusters are very distinct.
In addition, we also partition the dataset with the property sampling method (PSM) (Leonard and Roy 2006) as done by Jin et al. (2015), in order to compare such results with those obtained with our BSM. In the PSM, the compounds are sorted according to their descending experimental property values, then taking one compound out of every four compounds. Compounds taken out are used as the test set and the remaining ones as the training set.
The linear regression models are theoretically validated through leave-one-out cross-validation (loo) (Golbraikh and Tropsha 2002). According to the specialized literature, the loo explained variance (\( {R}_{\mathrm{loo}}^2 \)) should be greater than 0.5 for a validated model, although this is a necessary but not sufficient condition for its predictive power. A more rigorous leave-30%-out cross-validation (l30%o) is also practiced on the obtained linear model (200,000 cases).
We also validate our established QSPR models with the newly proposed mean absolute error (MAE)-based criteria (Roy et al. 2016). These authors provide some useful guidelines for determining the quality of predictions based on the MAE parameter and its standard deviation computed from the test set predictions after omitting 5% high residual data points, in order to obviate the influence of any rarely occurring high prediction errors that may significantly affect the quality of predictions for the whole external test set. It is considered that an error of 10% of the training set range should be acceptable, while an error value more than 20% of the training set range should be a very high error.
Finally, we scramble the experimental property values with Y-randomization (Rücker et al. 2007) and 10,000 cases, as a way of checking that the model is not a result of chance correlation when RMS rand is greater than RMS train.
Applicability domain
A predictive QSPR model is only able to predict molecules falling within its applicability domain (AD), so that the predicted property is not a result of substantial extrapolation (unreliable prediction) (Gramatica 2007; Roy et al. 2015; Jaworska et al. 2005). The AD definition is dependent on the model’s descriptors and the experimental property. In this way, through the AD definition, it is possible to confirm the validity of the developed models for the training and test set compounds and to identify outliers.
In this work, we determine the AD through two alternative methodologies. The first one is based on the well-known leverage approach (Eriksson et al. 2003), where a test set compound i must have a calculated leverage h i smaller than the warning leverage h ∗. The second one is based on a simple standardization approach (Roy et al. 2015): a given test set compound i having d standardized descriptor values s ik , k = 1 , … , d must have a maximum value \( {s}_{\mathrm{ik}}^{\mathrm{max}}\le 3 \). In the case that \( {s}_{\mathrm{ik}}^{\mathrm{max}}>3 \) and its minimum value \( {s}_{\mathrm{ik}}^{\mathrm{min}}<3 \), then the \( {s}_{\mathrm{i}}^{\mathrm{new}} \) parameter has to be calculated and must fulfill the condition: \( {s}_{\mathrm{i}}^{\mathrm{new}}=\left\langle {s}_{\mathrm{i}}\right\rangle +1.28\cdot {\sigma}_{{\mathrm{s}}_{\mathrm{i}}}\le 3 \), where 〈s i〉 is the mean of s ik values for i and \( {\sigma}_{{\mathrm{s}}_{\mathrm{i}}} \) is the standard deviation for such values.
Importance of model descriptors
In order to find out the relative importance of the jth descriptor in the linear model, the regression coefficients are standardized (\( {b}_{\mathrm{j}}^{\mathrm{s}} \), see Table 1S). The larger is the absolute value of \( {b}_{\mathrm{j}}^{\mathrm{s}} \), the greater is the importance of such descriptor (Draper and Smith 1981).
Results and discussion
We split the dataset into training and test sets with the first partitioning method, the PSM as originally used by Jin et al. (2015). About 25% of the total dataset is used for the validation set (29 molecules). Then, the most representative molecular descriptors of the training set are searched through the RM technique. The best MLR models based on 1–7 structural features are listed in Table 1, while a brief description of the descriptor’s meanings is supplied in Table 3S.
From Table 1, it is appreciated that the RMS train parameter continuously improves with the addition of molecular descriptors to the linear equation, a typical behavior in variable subset selection, but RMS test does not significantly improve beyond the number of four descriptors. In order to keep the model’s size as small as possible, we select such model as the best linear regression QSPR found with the PSM partition. This non-conformational four-descriptor model has an acceptable statistics: \( {R}_{\mathrm{train}}^2=0.89 \), \( {R}_{\mathrm{test}}^2=0.77 \), RMS train = 0.17, and RMS test = 0.34 and can also be favorably compared to the previous reported conformational-dependent seven-descriptor model, achieved with the forward stepwise procedure (Jin et al. 2015): \( {R}_{\mathrm{train}}^2=0.81 \), \( {R}_{\mathrm{test}}^2=0.79 \), RMS train = 0.22, and RMS test = 0.31. In terms of model’s size, our equation has a better quality.
It is our intention now to improve the present QSPR study by applying the second partitioning method of BSM. We apply the k-MCA-based procedure for splitting the dataset into N train = 89 and N test = 29 compounds (refer to Table 1S), thus ensuring a design of balanced molecular sets. The cluster centroid locations in terms of descriptor values are provided as a 87 × 117 matrix in the c1.txt file (Supplementary material).
The results shown in Table 1 clearly reflect that the new training set of 91 compounds from the BSM represents better the dataset than the training set from PSM, as RMS test is lower than RMS train for BSM contrary to PSM. This means that the training set molecules are able to explain the structure-property behavior for the test set molecules. In Table 1, the selected QSPR involves the following five descriptors:
In this equation, R ijmax denotes the maximum correlation coefficient between descriptor pairs, while o2.5 indicates the number of outlier compounds in the training set having a residual (difference between experimental and calculated property) greater than 2.5 times RMS train.
Equation 1 obtained with the BSM partitioning leads to an improved QSPR model for predicting logk OH; a plot for the predictions as a function of the experimental values is provided in Fig. 1. The dispersion plot of residuals in Fig. 2 tends to obey a random pattern around the zero line, suggesting that Eq. 1 predicts the whole dataset without systematic errors or residual bias.
The QSPR represented by Eq. 1 has an acceptable predictive power on the external test set of 29 water micropollutants according to \( {R}_{\mathrm{test}}^2 \) and RMS test parameters. Such model approves the internal validation process of leave-one-out cross-validation through the exclusion of one molecule at a time. The Y-randomization technique demonstrates that the model has RMS train < RMS rand and \( {R}_{\mathrm{rand}}^2<{R}_{\mathrm{train}}^2 \) and that a valid structure-logk OH relationship is established. The recommended external validation criteria (Golbraikh and Tropsha 2002) to assure predictive capability are also achieved: \( 1-{R}_0^2/{R}_{\mathrm{test}}^2(0.0046)<0.1 \) or \( 1-{R}_0^{\prime 2}/{R}_{\mathrm{test}}^2(0.0058)<0.1 \); 0.85 ≤ k(1.0005) ≤ 1.15 or 0.85 ≤ k ′(0.9994) ≤ 1.15; \( {R}_{\mathrm{m}}^2(0.82)>0.5 \).
The prediction performance of our QSPR model on the test set is found to be “good” by the MAE-based criteria, as it is satisfied the following condition: MAE ≤ 0.1 tr and MAE + 3σ ≤ 0.2 tr, where tr is the training set response range (2.5 logarithmic units) and the σ value denotes the standard deviation of the absolute error values for the test set data. In present case, our QSPR satisfies this condition not only for the whole test set (MAE = 0.0892 σ = 0.0661) but also after omitting 5% high residual data points (MAE(95%) = 0.0771, σ(95%) = 0.0495).
The five conformation-independent molecular descriptors appearing in the proposed quantitative structure-OH oxidation rate relationship are readily calculated from the molecular structure, and such variables belong to different classes (Diudea 2001; Katritzky and Goordeva 1993; Todeschini and Consonni 2009):
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An autocorrelation of the topological structure descriptor: AATS0e, the average Broto-Moreau autocorrelation-lag 0/weighted by Sanderson electronegativities. The structural variables introduced by Broto-Moreau are bidimensional autocorrelations between atom pairs (i, j) in a molecule, with the main purpose of capturing the degree of interaction between them. The nature of atoms is considered through a given property as atomic weight (w), i.e., atomic mass, polarizability, electronegativity, or volume. These indices are calculated from the graph by summing products of terms w i ⋅ w j including terminal atomic contributions in all the paths of a prescribed length (lag). For the case of AATS0e, the variable considers in its calculation the atomic composition and the Sanderson electronegativity.
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An information content descriptor: SIC5, the structural information content index (neighborhood symmetry of five-order). The information theory descriptors measure the molecular complexity as the diversity of elements present in the structure, such as atoms, bonds, cycles, symmetry, and centricity. In the present case, the descriptor expresses the five-order neighborhood symmetry for all the vertexes in the chemical graph.
Also, the next descriptors have a straightforward structural interpretation:
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A 2D atom pair fingerprint descriptor: AC.CX7, the count of C-X at topological distance 7, where X is an halogen atom (Cl, Br, and I).
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A Pubchem fingerprint descriptor: PC200, the presence of greater than or equal to 4 (saturated or aromatic) carbon-only ring size 6.
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A Klekota-Roth fingerprint descriptor: KC3738, indicating the count of the SMARTS pattern CCCCOC═O.
The molecular descriptors of Eq. 1 have positive numerical values, and thus, the sign of their regression coefficients in the linear model determines whether their contributions increase or decrease the predicted logk OH values. High numerical values of SIC5 and low values for AATS0e, PC200, KC3738, and AC . CX7 tend to lead to high predicted logk OH values. After standardization, the most important descriptors for predicting the hydroxyl radical rate constants of organic micropollutants are SIC5 (\( {b}_{\mathrm{j}}^{\mathrm{s}}=0.67 \)) and AATS0e (\( {b}_{\mathrm{j}}^{\mathrm{s}}=0.45 \)), whose numerical values change most in accordance with the numerical variations of the experimental property (Table 2). The remaining descriptors KC3738 (\( {b}_{\mathrm{j}}^{\mathrm{s}}=0.25 \)), PC200 (\( {b}_{\mathrm{j}}^{\mathrm{s}}=0.22 \)), and AC . CX7 (\( {b}_{\mathrm{j}}^{\mathrm{s}}=0.11 \)) complement each other inside the linear equation and have a comparable relevance. Some additional model properties of the selected molecular descriptors are provided in Table 2.
It is possible to draw a mechanistic interpretation of the descriptors participating in the QSPR model of Eq. 1. For instance, the AATS0e descriptor has a straightforward correlation to the mean atomic Sanderson electronegativity (Mse) with an intercorrelation coefficient R ij = 0.9995. This is in line with the observations of Jin’s work (Jin et al. 2015), which state that a molecule with a high electronegativity requires a high energy to remove its electrons, thereby making it difficult the OH radical induced electron transfer and impeding oxidation by OH radicals. In other words, AATS0e is negatively correlated to logk OH in Eq. 1.
The AC.CX7 descriptor involves the presence of halogen atoms (Cl, Br, and I) and thus considers the presence of electron withdrawing groups, making the C atom electrophilic and prone to attack by nucleophiles. Therefore, compounds posing halogens are less likely to be attacked by OH radicals, which are electrophiles. In this way, AC.CX7 is negatively correlated to logk OH in Eq. 1 and this observation also agrees with the reported result (Jin et al. 2015).
The remaining SIC5, PC200, and KC3738 contributing descriptors clearly reflex the importance of the topological structure description for the molecules under study.
The model’s squared correlation matrix is provided in Table 4S, showing the absence of high correlations between descriptors pairs. We also calculate the variance inflation factor (VIF), a parameter that measures the multicollinearity among descriptors. A VIF of 1 for a specific descriptor means that there is no correlation between this descriptor and all the remaining descriptors of the model, and a VIF exceeding 10 indicates that multicollinearity is a problem in the dataset (Roy and Roy 2009). From Table 2, it is demonstrated that the VIF parameter for each descriptor of Eq. 1 is near to 1. The numerical descriptor values are given in Table 5S.
Now we demonstrate that the proposed QSPR of Eq. 1 is generalizable and useful for application, that is to say, our model is not determined only by the training set composition due to the specific dataset partitioning of BSM. In Table 3, Eq. 1 derived with the BSM splitting is applied to the PSM splitting of Jin’s work (Jin et al. 2015) and vice versa. It is clearly appreciated that in both the PSM and the BSM splittings, our proposed QSPR has a better predictive capability on the test set according to the \( {R}_{\mathrm{test}}^2 \) and RMSE test parameters.
In addition, we perform 100 different random splittings and recalculate the statistics of the model obtained by Jin et al. and the one proposed by us in the present work. As shown by Table 6S, Eq. 1 leads to \( {R}_{\mathrm{test}}^2 \) for the 100 external test sets ranging from 0.58 to 0.95 and RMS test ranging from 0.15 to 0.26, while for the Jin’s seven-descriptor model, \( {R}_{\mathrm{test}}^2 \) ranges from 0.35 to 0.94 and RMS test ranges from 0.17 to 0.40. These findings suggest that the final model of Eq. 1 has a better stability of its predictive ability than the previous reported model. The good predictivity of our QSPR model on the test set does not result by chance, and the molecular descriptors involved in Eq. 1 work satisfactorily on the different training-test set partitionings.
The analysis of the AD for the QSPR of Eq. 1 reveals that five training set compounds have high leverages exceeding the h ∗ limit (0.202) such as: 54, 38, 101, 117, and 75. However, it is found that all the 29 test set compounds belong to the AD. The Williams plot (standardized residuals as function of h i values) for Eq. 1 is provided in Fig. 3, while the leverages for the 118 compounds are reported in Table 1S. It is known the fact that a compound with a high leverage would reinforce the model if the compound is in the training set (good leverage), but such a compound in the test set could have unreliable predicted data, the result of substantial extrapolation of the model (bad leverage) (Gramatica 2007; Jaworska et al. 2005). Thus, the five training set compounds lying outside the AD reinforce Eq. 1, while their high h i values may be purely attributed to the structurally heterogeneous dataset being studied. The results obtained with the leverage approach coincide with the ones obtained by using the standardization approach, as the two conditions \( {s}_{\mathrm{ik}}^{\mathrm{max}}\le 3 \) or \( {s}_{\mathrm{i}}^{\mathrm{new}}\le 3 \) are followed by all the test set compounds. Thus, the predicted logk OH values for the test set compounds can be considered as reliable.
Finally, it is noteworthy that an improved result is achieved in the published seven-descriptor model (Jin et al. 2015) when removing compounds 51 (Dalapon) and 54 (di(2-ethylhexyl) phthalate). The removal of such two high residual compounds in the reported QSPR leads to N train = 88 and N test = 28, and the following quality: \( {R}_{\mathrm{train}}^2=0.86 \), \( {R}_{\mathrm{test}}^2=0.87 \), RMS train = 0.18, and RMS test = 0.26. In the present study, we consider that our proposed QSPR of Eq. 1 represents an improvement over the reported Jin’s models due to the next main reasons:
-
i.
Equation 1 has a better predictive capability on the test set; \( {R}_{\mathrm{test}}^2=0.87 \), RMS test = 0.11, compared to the published \( {R}_{\mathrm{test}}^2=0.87 \), RMS test = 0.26.
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ii.
Outlier compounds are not removed by Eq. 1, contrary to the published result that removes two compounds.
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iii.
Equation 1 is a simpler model as it involves five descriptors instead of seven from Jin’s work.
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iv.
Our linear QSPR only involves molecular descriptors that do not depend on the three-dimensional conformations of the organic micropollutants, making easier its application for predicting k OH values for new compounds.
The conformation-independent QSPR approach employed in this work has as main advantage that the only experimental input required for designing the QSPR models is the experimental property being analyzed (Jagiello et al. 2016; Aranda et al. 2016; Duchowicz et al. 2014; Duchowicz et al. 2012), the experimental k OH values in the present case. No further experimental information is needed, such as, i.e., the experimental X-ray crystal structure for each compound’s conformation. It is well-known that additional more accurate and specific experimental information is always required when a microscopic and more sophisticated type of modeling methodology is involved in the study of a considered property (Jagiello et al. 2016). However, such specific experimental details are usually unavailable for any chemical system under study. In this work, we achieve our goal by predicting the hydroxyl radical rate constant in water without the need of additional experimental information in an approach that considers only constitutional and topological representations of the chemical structures.
Conclusions
The removal efficiency of contaminants from drinking water, distribution systems, and tap water can be assessed with the knowledge of their susceptibility toward oxidation in water treatment processes, in other words, by predicting the hydroxyl radical rate constant of organic micropollutants. Such experimental kinetic data, which are considered useful for the water industry when screening contaminants for their susceptibility to AOPs, are often unavailable for many emerging micropollutants. It is possible to assess the feasibility of an AOP for a specific compound in a specific natural water, by combining the k OH predictions with the R OH,UV model (Rosenfeldt and Linden 2007). In addition, it is possible to estimate the removal of contaminants in natural water by ozonation treatment using the R ct model (Elovitz and von Gunten 1999), which requires rate constants for each micropollutant screened as input.
In terms of model’s size and conformation independence, our established QSPR models outperform previous published results. In addition, the proposed models are obtained after the simultaneous analysis of a large number of molecular descriptors calculated through freely available softwares like PaDEL, Mold2, and Epi Suite. The consideration of the constitutional and topological aspects of the molecular structures in the conformation-independent QSPR approach achieves once more acceptable results, and new results on other physicochemical and biological properties of interest will be published soon elsewhere.
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Acknowledgements
We acknowledge the reviewers’ comments, which have helped to improve this work. EVO, DEB, SEF, and PRD are members of the scientific researcher career of CONICET.
Funding
We thank the financial support provided by the National Research Council of Argentina (CONICET) PIP11220130100311 project and to Ministerio de Ciencia, Tecnología e Innovación Productiva for the electronic library facilities.
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Ortiz, E.V., Bennardi, D.O., Bacelo, D.E. et al. The conformation-independent QSPR approach for predicting the oxidation rate constant of water micropollutants. Environ Sci Pollut Res 24, 27366–27375 (2017). https://doi.org/10.1007/s11356-017-0315-5
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DOI: https://doi.org/10.1007/s11356-017-0315-5