Abstract
Context
In the face of global change, evidence-based information for policy development and political action is needed. Research syntheses have the potential to produce more reliable and generalizable results than are possible from small and regional extent primary studies. Data-sharing and detailed reporting are indispensable prerequisites for syntheses, however syntheses often are seriously hindered by insufficient reporting of primary data.
Objectives
Since many ecological processes are strongly influenced by spatial pattern, we suggest reporting guidelines for landscape-ecological studies. Better data reporting will not only benefit the quality of primary research studies, and allow replication, but also facilitate research syntheses.
Methods
We evaluated how landscape context information was reported in primary research articles including recently published articles in the journal Landscape Ecology. We further looked at the author guidelines for several journals to check what authors are expected to report.
Results
Specifically, we found that the existing reporting of landscape context information was insufficient to evaluate the effects of tropical forest edges on bird nest predation risk. More generally, exact study locations were not provided in any evaluated article. No journal gave detailed instructions to authors on how to report study characteristics.
Conclusions
We argue that consideration of the following reporting guidelines could substantially facilitate research syntheses: (1.1) detailed map of study area, (1.2) spatial location of sampling points; (2.1) land-use types; (2.2) vegetation, key resources, soil, geology, and disturbance history; (2.3) additional site parameters; (3) results for each sampling point.
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Introduction
In the face of global change, research needs to provide evidence-based information for political actions. Unfortunately, most ecological studies are conducted at smaller spatial extents so that the possibility of reaching more general conclusions is limited (Hillebrand and Gurevitch 2013). At the same time, large numbers of primary research studies are available. Modern research synthesis techniques offer an exciting potential to compare results across studies and arrive to more reliable results and to detect important generalities (Thompson et al. 2000; Stewart 2010; Hillebrand and Gurevitch 2013). A prerequisite for substantial research syntheses is a “data-sharing culture” (Pullin and Salafsky 2010) and detailed reporting (Hillebrand and Gurevitch 2013). Today, digital data depositories allow storage of huge amounts of data (Pullin and Salafsky 2010; DRYAD 2014) and make the importance of documentation even more important. As one reviewer of this ms reminded us “raw data and specific coordinates provide (the) potential for re-analysis at later dates even generations from now that will be extremely important in these times of global change”. Nevertheless, research synthesis is seriously hindered by insufficient reporting of primary data.
In ecology, Hillebrand and Gurevitch (2013) have recently drawn attention to the importance of extensive reporting, commenting on the lack of “basic and essential details” in ecological studies and advocating a standardized reporting. The journal Ecology Letters has added a new checklist for reporting standards in experimental studies to their author guidelines (Hillebrand and Gurevitch 2013). Reporting guidelines are important tools for ensuring the applicability of research results. In health research, more than 200 reporting guidelines are listed and promoted by The EQUATOR Network (2014). Authors, reviewers, and editors commonly apply these guidelines and are aware of their value and benefit for high-quality research.
The delayed development in reporting guidelines for ecological studies might be due to the extreme variability in study subjects, conditions, and designs. Estimates of the world’s number of species vary between 5 and 30 million and only about 1.8 million species have been described so far (Vié et al. 2009). Health researchers, in comparison, only have to deal with one focal, albeit complex, study subject: humans. Ecological studies commonly have to deal with a number of largely uncontrollable and mostly unmodifiable conditions; e.g., species interactions, climatic influences, and anthropogenic disturbances. Because many ecological processes are strongly influenced by spatial pattern, the landscape context necessarily needs to be considered (Turner 1989; Pickett and Cadenasso 1995; Thompson et al. 2000). Manipulation of landscapes is either impossible or extremely costly and laborious. Health research, in contrast, benefits from powerful designs that allow for secure inferences, e.g., randomized controlled trials (Sibbald and Roland 1998). In addition, parameters that possibly influence study results can more easily be sampled and are consistently applied, e.g., sex, age, weight, or medication.
Manipulative experiments are not often practical or possible in many ecological studies carried out in real landscapes, so inferences need to be drawn from different data designs. More often than not, data collection is influenced by a variety of possibly moderating effects (Thompson et al. 2000; Shaffer and Johnson 2008; Sagarin and Pauchard 2010), e.g., climatic conditions, different land-use types, or human attitudes and activities. These conditions further drive the need to report information about landscape context in such detail that research syntheses become possible. Better data reporting will not only benefit the quality of primary research studies, but also facilitate research syntheses (Thompson et al. 2000; Nichols et al. 2007; Hillebrand and Gurevitch 2013). We therefore argue that reporting guidelines for studies carried out in real landscapes are urgently needed.
In the following, we present evidence of insufficient reporting of landscape context information from two literature searches and suggest a list of reporting guidelines for landscape-ecological studies.
Methods
We here refer to an already published meta-analysis (Example 1), where we aimed to analyze the influence of edge effects on avian nest predation (Vetter et al. 2013a). This meta-analysis has a strong biological focus and thus only reflects one aspect of landscape ecology (Bastian 2001; Wu 2006). We present it here because it nicely highlights the problem of insufficient reporting of landscape context information for a focused research synthesis. To also consider a broader variety of landscape ecological studies, we additionally evaluated reporting in recently published articles in Landscape Ecology (Example 2).
Example 1: reporting for a concrete case of research synthesis
For our meta-analysis, we searched for articles that evaluated the effects of tropical forest edges on bird nest predation risk (Vetter et al. 2013a). We found 20 articles on artificial nest predation studies that fulfilled our study inclusion criteria and tested for an influence of edge distance on nest predation risk. Moreover, we were interested in analyzing the influence of the landscape context. In particular, matrix type (here defined as land-use types other than native forest) (Angelstam 1986; Andrén 1995; Marzluff and Restani 1999; Lahti 2001), forest fragment sizes (Hanski et al. 1996; Marzluff and Restani 1999) and forest cover (Donovan et al. 1997; Hartley and Hunter 1998; Lahti 2001; Thompson et al. 2002) were hypothesized to have an influence on nest predation rates. We therefore extracted available information on matrix types adjacent to studied forest, forest fragment sizes, and forest cover from the Methods sections of the 20 evaluated studies.
Example 2: reporting in current articles of Landscape Ecology
We perused the most recently published articles in Landscape Ecology. We chose the journal because it traditionally publishes studies with a focus on landscape pattern and spatial heterogeneity. On April 23rd 2015, we searched all recently published articles and discarded those which had not conducted their own field work (Table S1). We searched the Methods sections of the articles not for specific parameters, as in Example 1, but for general information on the location of the study area and sampling points. We considered reporting of the precise sampling point locations as important, because respective information would allow generating desired landscape parameters for research synthesis (see “Discussion”). We documented if the following information was provided: coordinates of the study site(s), coordinate precision, a map with coordinates or distinct reference points, and precise locations of sampling points. We further documented if the authors had recorded and reported additional site parameters that were of interest for their specific study, e.g., canopy cover, number of snags, stem density, vegetation height, or distance to edge.
Journal instructions on reporting
We additionally looked at the Author Guidelines of various journals in order to check what they expected authors to report. We selected the five highest ranked journals in the Journal Citation Report 2012 (5-year IF) for the category “Biodiversity Conservation” in the Web of Knowledge. We looked for specific instructions on how to describe study sites and landscape parameters.
Results
Example 1: reporting for a concrete case of research synthesis
Matrix types
Although all 20 articles gave some information on the matrix types present in the study area, descriptions mostly offered little detail (Table S2). Twelve articles mentioned the presence of one matrix type in their study areas (e.g., pasture or farmland). Of the other eight articles that reported more than one matrix type, seven did not clearly relate matrix types to studied forest (fragments), although two reported results by matrix type. Only one article that reported different matrix types clearly related them to the studied fragments.
Fragment sizes
Seven articles reported sizes of studied fragments, but in only three articles could results be related to fragments. Four articles did not provide information on fragment sizes. Of the remaining nine articles, two had conducted research in continuous forest and seven in a forest block, although the sizes of the forest blocks were not always reported.
Forest cover
Six articles did not give information on forest cover in the study area. The reporting in the remaining articles had little detail and was diverse so that no useful information could be derived for analysis.
As a consequence, we could only test for an influence of matrix types in coarse categories and were unable to test for an influence of forest fragment sizes. Regarding forest cover, we used the location of the study area and generated the desired data ourselves via satellite images and GIS software. Yet, the exact positions and extents of the study areas were not available (Table S3). Mostly, coordinates were not precise (e.g., 17°45′N, 89°W) or represented only a delineation of the study area (e.g., 19°06′–19°18′S and 39°45′–40°19′W). We therefore calculated forest cover at three radii around the study area center which we defined by either the given coordinate pair or by averaging the provided delineation.
Example 2: reporting in current articles of Landscape Ecology
After excluding all articles that had not reported field work, we evaluated 20 articles (Tables S1, S4). Sixteen articles did not report coordinates. One article reported coordinates in degrees and three articles in minutes. The problem of different resolutions is evident when one realizes that (assuming a position at the equator) 1° latitude = 110.6 km = 60 min, 1 min = 1842.9 m = 60 s, and 1 s = 30.7 m. Similarly, 1° longitude = 111.3 km = 60 min, 1 min = 1855.3 m = 60 s, and 1 s = 30.9 m (calculated at http://msi.nga.mil/MSISiteContent/StaticFiles/Calculators/degree.html). Of the 20 articles, 18 articles presented maps, of which three articles displayed maps with coordinates (degrees/minutes) and two articles with other distinct reference points. No article reported precise locations of sampling points, although two articles stated that they had recorded each sampling point by GPS. Additional site parameters had been measured in 16 articles, but were not reported.
Journal instructions on reporting
No journal gave detailed instructions to authors on how to report study characteristics (Table S5). Only two journals (Global Change Biology and Conservation Letters) instructed authors to report sufficient detail to allow replication. One journal (Diversity and Distributions) offered authors the possibility to refer to outside data repositories where data used in their paper can be accessed by other scientists. All journals offered online supplementary material space to the authors. The lack of instructions for reporting important landscape context information in sufficient detail is obvious. We suggest that history probably has played a part in this problem. When journals were only printed, space was a fiscal constraint. Now that many journals are almost exclusively electronic, the constraint is relaxed. We now have the opportunity to rethink how to describe study sites and landscape parameters and to improve reporting.
Discussion
In our meta-analysis (Example 1) research synthesis was hindered by insufficient reporting of landscape context information. Analyzing the influence of matrix type, forest fragment sizes, and forest cover would have been relevant to explain variation across studies. Yet, analysis was only possible with little detail (matrix type, forest cover) or none at all (forest fragment sizes). The problem of insufficient reporting of the landscape context for research synthesis has been recognized repeatedly (Thompson et al. 2000; Parker et al. 2005; Nichols et al. 2007; Gardner et al. 2008; Mortelliti et al. 2010; Batáry et al. 2011; Vetter et al. 2011; García-Morales et al. 2013; Hillebrand and Gurevitch 2013; Vetter et al. 2013a). Landscape context matters (Ritchie 1997; Lindenmayer et al. 2002) as do scale and resolution (Bissonette 2013), and yet are not referenced consistently in primary research papers.
A variety of metrics and tools to quantify landscape pattern, e.g., landscape patchiness, edge density, landscape richness, or landscape shape index have been developed (Turner 1989; Turner 2005). The value of such metrics for reporting guidelines is however problematic, since metrics change with the resolution and extent of sampling and return different results depending on the classification of habitats or definition of a patch (Hargis et al. 1998; Turner 2005). Consider the simple measure of % forest cover: If primary studies provided % forest cover for their study area, but differed in extents or definition of ‘forest’, comparability would be problematic. Another issue is the amount of work for the primary authors. A hydrological study measuring nitrate concentration for a certain catchment area (Arvola et al. 2015) could be of interest for research synthesis on the impact of landscape patchiness on water quality (expressed by nitrate concentration). Yet, reporting landscape patchiness for their study area may be beyond the original purpose of the primary authors. The requirements of reporting guidelines will certainly create additional work for the primary authors. We argue that, considering the advantages and benefits of better reporting and facilitated research synthesis, a certain additional amount of work may be justifiable. It may be possible to distribute the additional workload appropriately between primary authors and scientists conducting research synthesis.
Below, we propose guidelines that do not require the primary authors to report a compulsory list of landscape metrics, but rather to provide the necessary information that allow scientists synthesizing studies to generate the desired landscape parameters themselves. For example, precise coordinate locations of sampling points would enable access to available land cover data and satellite images of known resolution and date, e.g., Corine Land Cover data (Copernicus Programme 2014), Landsat data (U.S. Geological Survey 2015), National Land Cover Database (NLCD) (Multi-Resolution Land Characteristics (MRLC) Consortium 2015) and allow re-generation of the desired data (for examples see Parker et al. 2005; Batáry et al. 2011; Vetter et al. 2013a). If primary authors in our meta-analysis (Example 1) had provided precise coordinate locations of sampling points, we would have been able to generate and analyze data on matrix types adjacent to studied forest, forest fragment sizes, and a more precise estimate on % forest cover of the study area. Yet, information on locations of sampling points was not given and information on study locations was imprecise. Example 2 suggests that insufficient reporting of landscape context information, including precise locations of study areas and sampling points, is not an occasional, but a common problem in most landscape-ecological studies.
Reporting guidelines for landscape-ecological studies
We suggest that the following basic data be provided for every paper:
Where was the study conducted? Where were the samples taken?
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1.1.
A detailed map of the study area, and/or a shapefile
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1.2.
Spatial location of sampling points with a clear description of the sampling protocol
Which conditions were present at sampling points?
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2.1.
Land-use types present in the study area and at the location of each sampling point
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2.2.
Vegetation, key resources, soil, geology, and disturbance history at sampling points
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2.3.
Author-provided additional site parameters
What results were found?
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3.
Results, i.e., associations or raw data, in relation to each sampling point
1. 1 A detailed map of the study area, and/or a shapefile
A detailed map provides a reference for the land cover data and/or satellite images. Coordinates, resolution and extent, lines of latitude and longitude, and map generation details (map source, projection, time/date, for satellite images: sensor, spectral bands) allow for referencing the map to a GIS-environment. Ideally, the map could be detailed enough to allow distinct sampling points to be recognized (Fig. 1).
Preferably, a shapefile containing the sampling points of the study area could be provided and stored in an online archive (see Shapefile files 1-6 in supplementary material). Additional information connected to the sampling points (e.g., date and time of sampling, investigator) could also be reported (in attribute table).
1.2 Spatial location of sampling points with a clear description of the sampling protocol
Providing precise locations of sampling points is essential, because by knowing the sampling point locations, most landscape parameters can be generated via land cover data or satellite images. Data on sampling point locations enable, for example, the consideration and analysis of fragment sizes, adjacent matrix types, edge distance, or fragment isolation. Ideally, coordinates in table format (see Table S6) or a shapefile (see above) containing the sampling points could be provided. In any case, we suggest coordinates be reported with a precision of seconds (e.g., 47°34′18″N; 7°40′25″E) or of ca. 30 m resolution (see above) (Table 1). Detailed reporting on sampling point locations already covers information on extent and resolution of the sampling. However, a clear description of the sampling protocol could be given, including information on where, why, when, and how data were sampled. Considering endangered species or privacy issues, reporting precise locations of sampling points might not always be possible or feasible. Primary authors may then instruct scientists aiming for research synthesis how and from whom they could get permission to access restrained data.
2.1 Land-use types present in the study area and at the location of each sampling point
The type of the land-use in a study area can have far-reaching influences on numerous ecological processes and conditions (Foley et al. 2005), such as ecosystem services (Kremen et al. 2007), soil quality (Islam and Weil 2000), species diversity (Blair 1996), or river ecosystems (Allan et al. 1997). Generating land-use types for research synthesis on basis of sampling point locations may not be possible, if no detailed land-cover data are available for the studied region. We therefore ask primary authors to either cite a reference of a land-cover database where data on land-use types of their study region can be found or to report land-use types present in the study area and at each sampling point. In the latter case, land-use types could be reported in table form (Table 1) or as a detailed map (for examples see Vergara et al. 2013; Loos et al. 2015).
2.2 Vegetation, key resources, soil and (if any) disturbance history at sampling points
For some studies, finer-resolution parameters going beyond the information derivable from satellite images or land-cover databases might be relevant. Vegetation structure and composition can impact species presence, abundance, movements, and fitness (Wiens 1969; Rotenberry 1985; Patterson and Best 1996; Bakker et al. 2002; Sekercioglu 2002; Mueller et al. 2011). For large frugivorous bats, for example, mature forest trees with big fruits represent important food resources (Schulze et al. 2000; Vleut et al. 2013). Orangutans (Pongo abelii, Lesson) find important food trees in riverine lowland forests (Kelle et al. 2014). For the capercaillie (Tetrao urogallus, L.), blueberry cover (Vaccinium myrtillus, L.) is essential (Storch 1997). Studies on species responses could therefore provide a description of vegetation structure and composition at sampling points (Table 1). In addition, for specialized species key resources may need to be reported (e.g., deciduous dead wood for the white-backed woodpecker (Dendrocopos leucotos, Bechstein), Angelstam and Mikusinski 1994).
Soil characteristics influence plant growth and vegetation composition (Huenneke et al. 1990; van Breemen et al. 1997). Hydrological processes might be impacted as much by geologic as by soil characteristics (Leland and Porter 2000; Tague and Grant 2004; Western et al. 2004). Soil types could therefore be reported for vegetation studies and geologic characteristics and soil types for hydrological studies.
Anthropogenic disturbances, e.g., agriculture, forestry, hunting, tourism, or cattle grazing, as well as natural disturbances, e.g., strong wind and fire events, can affect ecological processes and conditions (Connell 1978; Pickett and White 1985; Peres 2000; Laurance et al. 2006; Thiel et al. 2008; Vleut et al. 2013; Hao et al. 2014; Liu et al. 2015). Information on the date, type, extent, frequency, and intensity of disturbances will be valuable for cross study analyses. Because frequency and intensity are confounded variables (Benedetti-Cecchi 2003), a qualitative assessment of intensity could suffice, e.g., return to bare mineral soil, wind throw, or an earlier successional stage. Because of potential legacy effects, the reporting of past land-use activities can be important for research synthesis. For example, current vegetation composition and structure can be strongly influenced by past agricultural practices (Bellemare et al. 2002; Flinn and Marks 2007).
2.3 Author-provided additional site parameters
Frequently, authors may record additional (site) parameters of interest that are not included in this list of reporting guidelines. For example, Campbell et al. (2015) also estimated canopy cover while studying flow regime impacts on meta-communities, Galitsky and Lawler (2015) also sampled the number of snags and presence of water while studying bird community composition, and Lu et al. (2014) recorded tree height and diameter while studying the ecosystem services of plantations. We argue that all recorded information is valuable for research synthesis and should not be lost (see also Thompson et al. 2000), but made available. Additional parameters, such as key resources, forest stand characteristics, topography, and climatic characteristics or soil type, could be presented for each sampling point in online appendices. Since primary authors will usually have data on additional parameters ready and prepared for analysis, publishing as online appendices normally would require little extra effort. Our evaluation of current reporting in 20 articles published in Landscape Ecology (Example 2) showed that 16 articles had recorded or estimated additional parameters, but none reported them (Table S4).
3. Results, i.e., associations or raw data for each sampling point
Most primary studies in landscape ecology sample data with replicated, spatially distinct sampling designs. Yet, in almost all cases authors report results combined for the entire study area. Due to this practice, results are only available at broader resolution and existent scientific evidence is lost for research synthesis. In our Example 1, seven articles reported sizes of studied fragments, but only three articles reported results separated per fragment. We could easily have analyzed the influence of fragment size on nest predation for at least seven articles if the other four articles had presented results separated per fragment. Another four articles did not give information on fragment size nor on results per fragment. If all articles had given information on sampling point location plus results per sampling point, we could have included all articles in an analysis of fragment size effects on nest predation. The reporting of sampling point location therefore inevitably needs to be linked to the reporting of results, i.e., associations (between stressor, driver, condition, and observed response) (Ziegler et al. 2015) or raw data per sampling point (Table 1). As a consequence, many landscape parameters could be considered in research synthesis, improving our ability to draw general conclusions (Hillebrand and Gurevitch 2013).
Publishing raw data has additional benefits, because the recurring challenge of finding an appropriate effect size for a meta-analysis (Lajeunesse 2013) would greatly be facilitated (Mengersen et al. 2013). Meta-analysis is a powerful statistical summary method used to combine results from primary research studies (Borenstein et al. 2009; Koricheva et al. 2013; Vetter et al. 2013b). The great variation in primary studies is also expressed in the variety of measurements that are used to present results and effect sizes. For meta-analysis, a variety of measurements needs to be transformed into a common effect size, a process that frequently leads to the exclusion of articles which did not present results in a usable or transformable format (Lajeunesse 2013; Mengersen et al. 2013). Technical storage conditions are no longer a viable reason for excluding raw data, since data can quite easily be stored in online archives, e.g. DRYAD (2014).
Conclusion
Research syntheses in ecology offer the great advantage of combining results across mostly small and regional studies, improving the reliability of results and generality of conclusions. We have shown that insufficient reporting of the landscape context (including study area and sampling point locations) substantially hinders research syntheses. We presented a list of Reporting Guidelines for landscape-ecological studies that focused on the reporting of precise sampling point locations (item 1) in connection with the reporting of results per sampling point (item 3). We argue that by reporting the where (location) and what (results) of future ecological studies, research synthesis can be facilitated considerably. We explicitly address these concerns not only to authors, but primarily to editors and reviewers. We argue that reporting guidelines will help with drawing inferences “founded on solid empirical information” and thus make a significant contribution to the advancement of landscape ecological research (Wiens 1996).
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Acknowledgments
D.V. was supported by a grant from the ‘‘Landesgraduiertenförderung Baden-Württemberg’’. Support for J.A.B. was provided by the Department of Wildland Resources and the USGS Utah Cooperative Fish and Wildlife Research Unit at Utah State University. We are grateful to all our colleagues from the Chair of Wildlife Ecology and Wildlife Management for providing input and ideas. We thank T. Ludwig for help and advice with all GIS-related questions. Three anonymous reviewers made valuable comments on earlier versions and helped to improve the manuscript.
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Table S1
Most recently published articles in Landscape Ecology (searched on April 23rd 2015) (docx 34 kb)
Table S2
A concrete case of research synthesis: Reporting of matrix type(s), forest fragment sizes, and forest cover (docx 21 kb)
Table S3
A concrete case of research synthesis: Reporting of location of the study area and sampling points (docx 20 kb)
Table S4
Reporting of location of the study area and sampling points in recently published articles in Landscape Ecology (docx 21 kb)
Table S5
Evaluation of the Author Guidelines of the five highest ranked journals in the Journal Citation Report 2012 (5-year IF) in the Web of Knowledge (Category: Biodiversity Conservation) (docx 17 kb)
Table S6
Coordinates of the study locations for our concrete case of research synthesis (Example 1). Coordinates are displayed in WGS 84 system and can be directly imported to a GIS environment. Note that the coordinates refer to study locations, but we suggest providing sampling point locations for your primary study (xlsx 10 kb)
Shapefile files 1-6
Shapefile containing the study locations for our concrete case of research synthesis (Example 1). Note that the shapefile contains study locations, but we suggest providing sampling point locations for your primary study (zip 4 kb)
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Vetter, D., Storch, I. & Bissonette, J.A. Advancing landscape ecology as a science: the need for consistent reporting guidelines. Landscape Ecol 31, 469–479 (2016). https://doi.org/10.1007/s10980-015-0296-z
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DOI: https://doi.org/10.1007/s10980-015-0296-z