Abstract
The performance of different detrending methods in removing the low-frequency contribution to the calculation of turbulent fluxes is investigated. The detrending methods are applied to the calculation of turbulent fluxes of different scalars (temperature, ultrafine particle number concentration, carbon dioxide and water vapour concentration), collected at two different measurement sites: one urban and one suburban. We test and compare the performance of filtering methodologies frequently used in real-time and automated procedures (mean removal, linear detrending, running mean, autoregressive filter) with the results obtained from a reference method, which is a spectral filter based on the Fourier decomposition of the time series. In general, the largest differences are found in the comparison between the reference and the mean-removal procedures. The linear detrending and running-mean procedures produce comparable results, and turbulent-flux estimations in better agreement with the reference procedure than those obtained with the mean-removal procedure. The best agreement between the running mean and the spectral filter is achieved with a time window of 15 min at both sites. For all the variables studied, average fluxes calculated using the autoregressive filter are increasingly overestimated for a time constant \(\tau \) compared with that obtained using the spectral filter. The minimization of the difference between the two detrending methods is achieved with a time constant of 120 s, with similar behaviour observed at both sites.
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1 Introduction
The eddy-covariance (EC) technique is the most direct, efficient and reliable method for measuring the turbulent flux of a scalar, including greenhouse gases such as carbon dioxide (Baldocchi 2003; Aubinet 2008), methane (Alberto et al. 2014; Detto et al. 2011), ammonia (Ferrara et al. 2012; Sun et al. 2015), and nitrogen oxides (Famulari et al. 2010; Christen 2014) above the Earth’s surface. The EC approach has been widely used to study the complex behaviour of aerosol fluxes in the atmospheric surface layer, including particle formation, growth, and surface exchange processes (Seinfeld and Pandis 2006). As the processes relating to vertical transport and the exchange of particles are highly relevant to air quality and climate modelling (Wesely and Hicks 2000; Kanakidou et al. 2005; Textor et al. 2006), significant efforts have been made to determine turbulent aerosol fluxes in the atmosphere over several types of canopy: in rural environments (e.g. Gallagher et al. 2002; Deventer et al. 2015a; Rannik et al. 2015), over water surfaces (e.g. Donateo et al. 2012; Bell et al. 2015), and over ice/snow (e.g. Nilsson and Rannik 2001; Grönlund et al. 2002; Contini et al. 2010). Urban environments have also been the focus of several recent studies to characterize particle emission velocities (e.g. Dorsey et al. 2002; Mårtensson et al. 2006; Nemitz et al. 2008; Schmidt and Klemm 2008; Jarvi et al. 2009; Contini et al. 2012; Deventer et al. 2015b). Eddy covariance was further used to directly measure chemically resolved turbulent fluxes of submicron aerosols using a high-resolution time-of-flight aerosol mass spectrometer, quantifying both organic and inorganic components, including ammonium, sulphates and nitrate (Nemitz et al. 2008; Farmer et al. 2011, 2013).
In the last few decades, with the proliferation of long-term worldwide networks of flux sites, such as EuroFlux (Valentini et al. 2000), AmeriFlux (Baldocchi et al. 2001), AsiaFlux (Ueyama et al. 2010; Suzuki and Ichii 2010), and global networks such as FluxNet (Baldocchi et al. 2001), real-time automated procedures have become necessary to reduce the burden of quality control, and to verify the theoretical basis for EC measurements (Finnigan et al. 2003; Moncrieff et al. 2004). Moreover, it is important that data are made available in the public domain as soon as possible after the measurements are made (Mauder et al. 2013).
Requirements for high-quality EC measurements include stationary conditions and fully developed turbulence. In general, it is assumed that most of the net vertical transfer is due to turbulent eddies, and that there are no low-frequency trends in the data. The presence of a trend, which is any frequency component with a period longer than the record length, introduces non-stationarity into the time series. In the surface layer, non-stationarity may originate from diurnal trends and boundary-layer temporal transitions, synoptic-scale or mesoscale variability (Cava et al. 2004; Andreas et al. 2008), and turbulence interaction with sub-mesoscale motions (i.e. wave-like phenomena) (Mahrt 2010; Cava et al. 2015; Sun et al. 2015).
Nowadays, the quality control of eddy-covariance data is based on the stationarity test (Mahrt 1998; Foken et al. 2012; Cava et al. 2014) and on the test of integral turbulence characteristics (Foken et al. 2012). Turbulence statistics computed in non-stationary conditions may lead to biased estimates and to an ambiguous physical interpretation due to the modulation of fluxes related to non-stationary motions (Van de Wiel et al. 2002), which can produce contamination from large time and spatial scales (i.e. mesoscale). For this reason, it is necessary to remove the long-term trends that produce distortion at the low-frequency end of the spectrum (Kaimal and Finnigan 1994; Gash and Culf 1996; Vickers and Mahrt 2003; Barnhart et al. 2012). Non-stationary contributions may occur simultaneously over a variety of time scales, are often not sharply separated from turbulence by a well-defined spectral gap, and are only partially removed by detrending and filtering. According to Kaimal and Finnigan (1994), since the nature of the detrending method determines the shape of the detrended spectrum and the location of its maximum, care is required when using trend removal. However, turbulent fluxes have recently been obtained from raw data through different detrending methodologies, both in real-time and in off-line post-processing to reduce or eliminate the non-stationary effects of long-term contributions (Finnigan et al. 2003). Our aim here is to investigate the performance of the commonly used detrending procedures for the calculation of turbulent fluxes in real-time and automated procedures by comparing the fluxes of different scalars at two different sites.
While different methods for trend removal have been proposed in the literature, general agreement on how to separate low-frequency perturbations from turbulence has not yet been reached. The most commonly applied methods in real-time procedures include linear detrending, two types of high-pass filters, namely the moving average or running mean (Moncrieff et al. 2004), and the autoregressive filter (McMillen 1988; Rannik and Vesala 1999), which are to be compared here with a spectral filter approach based on the Fourier decomposition of the time series in post-processing analyses. The spectral filter is used as the reference method because of its ability to separate turbulent and larger-scale motions in the presence of a well-defined spectral gap (Mahrt 2014).
Detrending methods are applied here to the calculation of turbulent fluxes of different scalars (temperature, ultrafine particle number concentration, carbon dioxide and water vapour concentrations). The fluxes measured at two different measurement sites (an urban and a suburban site) are compared to assess the performance of the various methodologies, and their possible dependence on site characteristics.
2 Detrending Methods
The simplest method for obtaining the fluctuating components for the calculation of covariances according to Reynolds averaging under ideal stationary conditions is the mean removal method (Monin and Yaglom 1971; Stull 1988). Here, the turbulent fluctuation \({x}'\) is obtained as a difference between the measured time series \(x\mathrm{(}t\mathrm{)}\) and the non-fluctuating part
In the case of mean removal, \(\bar{x}\) may be determined simply as the arithmetic mean of the time series x over a period T (or a number of points N for a discrete series) as
While mean removal is adequate in stationary conditions, steady-state conditions rarely exist in the atmosphere.
2.1 Linear Detrending
The linear detrending of eddy-correlation data for flux calculations (Gash and Culf 1996) initially divides data into blocks of, e.g., 30 min, followed by the linear regression of the block of data as a function of time for
where S and I are, respectively, the slope and intercept of the line obtained from a linear regression of x for each block of time. This rapid method can be used to calculate turbulent fluxes in real-time during data acquisition. While linear detrending is a computationally efficient procedure in removing non-stationarity due to synoptic-scale variations, it is not so helpful in the case of non-stationarity due to sub-meso or mesoscale flows (Camarori et al. 1994).
2.2 Running Mean
Another method to obtain the fluctuating components for covariance calculation is to use a running mean based on the previous N data points, where N depends on the chosen time window \(t_\mathrm{w}\) (generally from 5 to 15 min). The running mean is a high-pass filter of contributions to the covariance from atmospheric motions of a time period longer than the specified window width (Bendat and Piersol 1958). A smaller time window results in the removal of higher frequency components from the time series.
2.3 Autoregressive Filter
In the autoregressive filter, \(\bar{x}\) is obtained by high-pass filtering the time series x
where \(a=\hbox {exp}\left( {-\Delta t/\tau } \right) , \Delta t\) is the time difference between two consecutive measurements and \(\tau \) is the time constant of the filter (Rannik and Vesala 1999). The filter is similar to the simple running mean, but weighted in such a way that distant samples have an exponentially decreasing weight on the current mean, while never reaching zero.
Of the four detrending methods described above in attenuating the low-frequency part of the cospectrum, the mean removal has the smallest effect on the cospectrum, whereas the autoregressive filter attenuates the cospectrum the most (Rannik and Vesala 1999). The time constant \(\tau \) has to be related to the required cut-off frequency of the filter, with McMillen (1988) suggesting a value of 200 s as adequate for his dataset. The same value was also adopted by Rannik (1998), while Rannik and Vesala (1999) showed that higher values (around 1000 s) overestimated the variances.
2.4 Spectral Filter
Spectral decomposition allows for the determination of the typical time scales contributing to turbulent energy and fluxes. The power spectrum (\(S_{x})\) of an arbitrary flow variable x is defined as the Fourier transform of the autocorrelation function of x and its integral is proportional to its variance
where f is the natural frequency in Hz. The cross spectrum between two variables (scalars) x and y is the Fourier transform of the cross-correlation function of x and y (Jenkins and Watts 1968). The real part is the cospectrum (\(C_{xy})\), the integral of which gives the covariance
The spectra and cospectra of momentum and scalars exhibit a peak related to the dominant turbulent time scales, which is often separated by a spectral gap between the mesoscale and sub-mesoscale motions. The time scale of turbulent eddies and of the gap region depends on the atmospheric stability, and in near-neutral and unstable conditions the wavelength of the gap tends to naturally increase with height. In stable conditions, the gap remains almost constant (Vickers and Mahrt 2003).
The effect of mesoscale flow on turbulent statistics and fluxes is filtered by removing all low-frequency spectral contributions below a threshold as detected on the basis of the spectral gap position in different stability conditions. Spectral analysis of velocity components and scalars is executed by means of a fast Fourier transform on runs of about 3 h in length in order to minimize the red-noise effect (produced by frequencies lower than 1/T, where T is the period for calculation) on the range of frequencies of interest. The high-pass filtered time series is obtained by nullifying the Fourier coefficients relative to frequencies lower than the detected threshold, and then by applying the inverse Fourier transform. Turbulence statistics and fluxes are computed on the filtered time series using an averaging time of 30 min as for the other detrending procedures. While this procedure is often applied in post-processing analyses, it is used as a reference method here because of its ability to separate turbulent and mesoscale motions, in particular in identifying the aforementioned spectral gap.
3 Measurement Campaigns
We collected turbulence data during two different experimental campaigns over surfaces with different degrees of complexity (Table 1): suburban (Donateo and Contini 2014) and urban (Contini et al. 2012) canopies (in Italy).
3.1 Suburban Canopy
The measurement campaign in the suburban area was carried out between 12 and 30 July 2010 in the experimental field of the Lecce Unit of Institute for Atmospheric Sciences and Climate within the University Campus, which is located about 3.5 km south-west from the town of Lecce. The site is a rectangular field with the longer side of about 200 m; it is characterized by short vegetation, with the two contiguous sides surrounded by small trees. More details of the site can be found in Donateo and Contini (2014) and Conte et al. (2015).
3.2 Urban Canopy
The urban measurement campaign was performed between 12 March and 8 April 2010 in the urban area of Lecce (Puglia) located in the south-east of Italy. Instruments were placed on the corner of a roof of a high school on a mast about 2.5 m tall at a total height of 14 m above ground level. The school is located near a four-lane road with traffic rates of up to 2400 vehicles per hour. A more detailed discussion and characterization of this site can be found in Contini et al. (2012).
4 Instruments
At both experimental sites, micrometeorological systems based on the EC technique measured turbulent fluxes of momentum, mass and energy. The wind velocity components (u, v, w) and sonic temperature (\(T_\mathrm{s})\) were measured using an ultrasonic anemometer (Gill R3); water vapour (q) and carbon dioxide \((\hbox {CO}_{2})\) concentrations were measured by means of a \(\hbox {CO}_{2}/\hbox {H}_{2}\hbox {O}\) infrared open-path analyzer (LI-COR LI-7500) at both the urban and suburban sites. The open-path infrared gas analyzer LI-7500 has a fixed path length of 125 mm and measures both water vapour and \(\hbox {CO}_{2}\) concentrations through absorption at wavelengths centred at 4.26 and 2.59 \(\upmu \hbox {m}\) (Mauder et al. 2007). For the calculation of particle number fluxes, a condensation particle counter (CPC-Grimm Aerosol, model 5.403; Contini et al. 2012; Conte et al. 2015) measured the total particle number concentration at a sampling frequency of 1 Hz. Additionally, a slow-response thermohygrometer (Rotronic MP100A) was used at both sites for the measurement of temperature and relative humidity.
5 Data Processing
We computed turbulent fluxes for an averaging period of 30 min with standard instrumental and physical corrections of the measured time series. Discarded were spikes in the measurements and wind directions for which the tower wake contaminates data. The wind velocity components are rotated in a streamline coordinate system according to McMillen (1988); the third rotation omitted if the rotation angle exceeded \(10^\circ \) (the absolute value). Fluctuating parts of the measured time series are extracted using the different detrending approaches discussed in Sect. 2, after which turbulent fluxes were computed. Given the fast response of the \(\hbox {CO}_{2}/\hbox {H}_{2}\hbox {O}\) detector, a correction for the high-frequency losses in the calculation of latent heat and \(\hbox {CO}_{2}\) fluxes was not applied. Scalar fluxes of water vapour and \(\hbox {CO}_{2}\) are corrected for density effects following Webb et al. (1980). The effect of air density fluctuations on particle number fluxes is corrected using the approach reported in Buzorius et al. (2000), and, considering its absolute value, the correction was negligible, both for the urban (1%) and suburban (0.2%) campaigns. Due to the relatively long first-order time response of the condensation particle counter (1.3 s), the full atmospheric cospectrum between the vertical wind component and the particle number concentration is under-sampled at high frequencies. The turbulent aerosol flux is thus corrected using the analytical formulation proposed by Horst (1997). The average correction for the high-frequency losses on the particle flux is about 23% in the suburban measurements, and 33% for the urban site. For all scalar fluxes, the correction due to the separation of the scalar instruments and the anemometer (a distance of about 0.15 m) is estimated (Massman 2000) to be negligible, being between 1 and 2% for the scalars considered, and hence not applied in our calculations. The uncertainty of particle-flux estimates due to the random statistical counting errors in the condensation particle counter is estimated assuming random Poissonian counting statistics as reported in Fairall (1984). The average statistical error in the measurements in the urban and suburban campaigns is 0.33 and 1%, respectively. Finally, a stationarity test is performed according to Mahrt (1998), in which a threshold of two is chosen for the non-stationarity index. The percentage of non-stationary data does not change significantly with different detrending methods, varying generally by \({<}1\)%. The cases of non-stationary data change according to the variable studied and, especially, depending on the measurement site (Cava et al. 2014). The average percentages of non-stationary data are reported in Table 2, which also reports the number of residual points after the removal of non-stationary data from the analysis according to the particular detrending method.
To obtain a quantitative comparison, fluxes calculated by applying the spectral filter and autoregressive method (at different time constants) are compared, and a series of statistical parameters computed. The slope (S) and the intercept (I) of the best-fit regression line are calculated, together with Pearson’s correlation coefficient (C), which describes the degree of co-linearity between the two datasets. However, these statistics are oversensitive to outliers and insensitive to additive and proportional differences between different datasets (Legates and McCabe 1999).
Several error indices are commonly used in data comparison, including the root-mean-square error (RMSE), a normalized version of which is used here. Specifically, a comparison evaluation statistic is calculated (Singh et al. 2004), viz. the RMSE-observations standard deviation ratio (RSR), which standardizes RMSE values using the standard deviation \(\sigma \) of the reference dataset
where \(x_{SF} \) is the \(\hbox {i}\mathrm{th}\) observation for the constituent being evaluated, \(x_d \) is the \(\hbox {i}\mathrm{th}\) compared value for the method being evaluated. The RSR values vary from a large positive value down to the optimal value of zero, which indicates \({{ RMSE}} = 0\) or residual variation and therefore a perfect data fit, to a large positive value.
The Nash-Sutcliffe efficiency (NSE) is a normalized statistic that determines the relative magnitude of the residual variance (“noise”) compared with the measured data variance (Nash and Sutcliffe 1970), indicating how well the scatter plot of the data fits the 1:1 line, where
Here, \(x_{SF} \) is the \(\hbox {i}\mathrm{th}\) observation for the constituent being evaluated, \(x_d\) is the \(\hbox {i}\mathrm{th}\) compared value for the method being evaluated, and \(x_{mean} \) is the mean of observed data for the method being evaluated. Here, NSE values range between \({-}\infty \) and 1, with NSE = 1 being the optimal value. Values between zero and 1 are generally considered as acceptable, whereas values lower than zero indicate an unacceptable performance.
Other statistical parameters are calculated to establish a good comparison between different methods, in particular the fractional bias defined as
and the average relative difference defined as
where \(x_{SF} \) and \(x_d \) are defined as in Eq. 7. We evaluate the running-mean method (for different time windows), mean removal and linear trending with respect to the spectral filter in a similar manner.
6 Results and Discussion
The different detrending methods described in Sects. 2.1–2.3 are tested here and compared with results obtained by the spectral-filtering method for the extraction of high-frequency turbulent fluctuations. As specified in Sect. 2.4, the spectral filter is used as the reference approach because of its ability to successfully separate turbulent and mesoscale motions, in particular in the presence of a detectable spectral gap between the different flow scales.
The thresholds separating turbulent eddies are chosen on the basis of spectral and cospectral analyses at each experimental site, and for different stability conditions. Spectra and cospectra are computed for periods of about 3 h, and averaged over the entire duration of each of the measurement campaigns. The period of 3 h is chosen to resolve both turbulent and mesoscale motions, and to locate the gap between these two flow components. Moreover, this choice appeared optimal for differentiating the different phases of the diurnal cycle. Figure 1 shows normalized mean spectra and cospectra of temperature and number particle concentration for the urban site, as an example. Spectra and absolute values of cospectra have been artificially shifted and divided into two groups (with different colours) for night (blue shading) and day (red shading) hours for clearer comparison. The 3-h time frames are grouped on the basis of the analysis of the atmospheric stability during the sampling period (not shown). Spectra of \(T_\mathrm{s}\) and cospectra involving \(T_\mathrm{s}\) exhibit clear gaps at \(f = 0.00056\, \hbox {Hz}\, ({\approx }30\, \hbox {min}\)) during daytime and at \(f = 0.0017\, \hbox {Hz}\, ({\approx }10\,\hbox {min}\)) during nighttime, and follow the inertial subrange scaling (Kolmogorov 1941). While the spectra and cospectra of momentum and other scalars exhibit a similar behaviour, the spectral behaviour of number particle concentration appears noisier in the high-frequency range (due to the limited instrumental time response), as well as in the low-frequency range. Because this behaviour has been frequently observed elsewhere (Damay et al. 2009; Held 2014), the comparison with spectra and cospectra of other scalars is often used to obtain more reliable estimates of particle turbulent fluxes (Held 2014). On the basis of these observations, the thresholds for the spectral filter were chosen as the positions of the gaps observed in scalar spectra and cospectra above the urban canopy. The spectral behaviour and, as a consequence, the thresholds obtained for the suburban site, were comparable to those of the urban canopy, probably because of the similar surface characteristics and atmospheric conditions.
To assess how the different detrending methodologies affect the contribution of different scales to the scalar transport, cospectra are calculated for the unfiltered (mean removal) and detrended time series (with linear detrending, autoregressive filter and running mean), taking into account the sensible heat flux in two separate daily periods [1200–1500 LT (daytime) and 2100–2400 LT (nighttime)], as reported in Fig. 2.
As expected, all detrending methods alter the low-frequency range. Some detrending methods act more incisively than others, and in particular, linear detrending and a running mean are more efficient in eliminating low frequencies with respect to the autoregressive method, as also observed below in the statistical analysis.
The autoregressive filter is used with a variable time constant \(\tau \) (from 10 to 400 s, with different time steps, as reported in Fig. 3) for sensible heat, latent heat, \(\hbox {CO}_{2}\), and particle number fluxes.
As for both the spectral-filter and autoregressive methods, the distinction between daily (from 0900 to 1800 LT) and nocturnal hours (from 0000 to 0800 LT and from 1900 to 2300 LT) was investigated for the possible effects of atmospheric stability. However, no particular differences were observed between nighttime and daytime data, so that the same \(\tau \) is applied to all hours of the day, and at both sites. The relative difference \(\Delta \) and the relative ratio clearly show that the average fluxes are increasingly underestimated relative to the reference detrending procedure, for an increasing magnitude of the time constant \(\tau \) to 130 s. However, beyond this value, the fluxes are overestimated for all the variables studied. In particular, all fluxes are underestimated by between 40 and 4%, and overestimated by 2% to about 12% (as averaged over the entire day). At the same time, it is particularly evident from the RSR (Fig. 3c, d) and NSE (Fig. 3e, f) values that the best agreement, meaning the minimization of the difference between autoregressive and the spectral-filter detrending, is achieved with a time constant of about 130 ± 10 s. Therefore, particle number fluxes behaved similarly to the other variables with respect to the autoregressive filtering procedure at both measurement sites. For the two campaigns, the worst performance is obtained for fluxes of low magnitude, for example, the latent heat flux at the urban site or the particle number flux at the suburban site.
The performance of the running mean with respect to the spectral-filter method is evaluated similarly to that done for the autoregressive filter. The running-mean detrending method is used with \(t_\mathrm{w}\) from 3 to 21 min (with different timesteps, as reported in Fig. 4). Our comparison highlights the underestimation of average fluxes with respect to the reference procedure, and increasingly so with a decrease in \(t_\mathrm{w}\) from 15 to 3 min for all the variables studied. Otherwise, all fluxes are overestimated with the increasing of \(t_\mathrm{w}\) from 15 to 21 min.
Specifically, for \(t_\mathrm{w}\) increasing from 3 to 10 min, the sensible heat flux is underestimated and overestimated with respect to the spectral filter by 8 and 1%, respectively (as average over all the day); likewise, the \(\hbox {CO}_{2}\) flux is underestimated and then overestimated by 4 and 2%, respectively, while the latent heat flux is underestimated and overestimated by 16 and 1%, respectively. Similarly, the particle number flux suffered an underestimation of 9% at \(t_\mathrm{w} = 3\) min, to an overestimation of 1% for \(t_\mathrm{w} = 15\) min. The best collinearity between the running mean and the spectral filter is achieved for \(t_\mathrm{w} = 10\) and \(t_\mathrm{w} = 15\) min at the urban and suburban sites, respectively, as inferred from RSR and NSE values (Fig. 4). As for the autoregressive method, a distinction between daily and nocturnal periods is made, so that a difference between the two sets of data may be found. For the daytime, the least difference between the running mean and spectral methods is achieved for \(t_\mathrm{w} = 15\) min, while for the nighttime, the difference is minimized for \(t_\mathrm{w} = 10\) min.
The daily hourly patterns are calculated for fluxes after the application of detrending of the scalars (Fig. 5). The autoregressive method is applied for \(\tau = 130\) s for all variables at both sites. The running mean is applied for the urban and suburban sites with \(t_\mathrm{w} = 10\) and \(t_\mathrm{w} = 15\) min during night and day, respectively. In addition, the daily patterns for linear detrending and mean removal are reported for comparison. Relative differences with respect to the reference method are greater for nighttime than daytime, for sensible and latent heat, and for particle fluxes at urban and suburban sites. These differences may be due to the low values of fluxes observed during the night, so that large relative differences result even with small absolute differences. However, it is not possible to exclude the possible influence of atmospheric stability.
The quantitative inter-comparison between the fluxes calculated on a 30-min basis and the chosen reference method is based on the Pearson correlation coefficient, the RSR value, and the NSE value as shown in Fig. 6 for each variable at both sites. All detrending methods produce an overestimation with respect to the reference procedure. In general, the relative difference is most marked between the reference and mean-removal procedures, becoming less marked in passing from the mean-removal to linear-detrending, to the running-mean procedures. Specifically, the mean removal produces, on average, an overestimation of 3% for all variables for the two sites, while linear detrending gives an average difference of about 2%. From these results, it is clear that linear detrending improved the estimation of turbulent fluxes with respect to the mean-removal procedure, but the best performance is obtained with the running-mean method (with a relative difference of 0.5%). On the contrary, the autoregressive filter is markedly different from the reference method, but is not significantly different from mean-removal procedure.
7 Conclusions
We investigated the performance of common detrending methods used for removing the low-frequency contribution to turbulent fluxes, both in real-time and in off-line post-processing automated procedures. The filtering methods were tested and compared with a spectral filter based on the Fourier decomposition of the time series, used here as a reference. Band-pass filters based on Fourier analysis are often used in post-processing analyses to separate turbulent fluctuations from other mesoscale or sub-mesoscale motions (for example, turbulence and horizontal meandering or nocturnal gravity waves). Filtering methodologies appear optimized in the presence of a well-defined spectral gap, where a clear separation between turbulence and larger scales is evident (Mahrt 2014).
The spectral filter has been used here as the ‘reference method’ because a spectral analysis of data exhibited a clear spectral gap in most cases, thus guaranteeing a reliable result in the filtering process.
We compared detrending methods for the calculation of the turbulent fluxes of different scalars (temperature, ultrafine particle number concentration, carbon dioxide and water vapour concentration) using data collected at two different measurement sites: an urban site and a suburban area. The autoregressive filter was used with time constants \(\tau \) from 10 to 400 s, where average fluxes were underestimated with respect to the reference filter, and increasingly so for time constants \(\tau \) up to 130 s, and overestimated beyond this threshold for all the variables studied. The minimization of the difference between autoregressive detrending and the reference was achieved with a time constant of 130 s. No particular differences were observed between nighttime and daytime data, and a similar behaviour was observed at both measurement sites. A running mean was used with different time windows from 3 to 21 min. In general, the average fluxes were underestimated with respect to the reference procedure, for time windows \(t_\mathrm{w}\) from 15 to 3 min, for all the variables studied. Otherwise, all fluxes were overestimated with the increasing of \(t_\mathrm{w}\) from 15 to 21 min. The running mean showed differences in the best time window, related to the different stability conditions, similarly to what has been observed for the spectral filter. The best performance was obtained when the running-mean method was applied, in both the urban and suburban environments, for \(t_\mathrm{w} = 10\) and 15 min during night and day, respectively. All detrending methods overestimated fluxes with respect to the reference procedure. In general, the relative difference was most marked when comparing the reference with the mean-removal procedure, reducing when passing to the linear and running-mean procedures. From these results, it is clear that linear detrending improved the turbulent-flux estimation with respect to the mean-removal procedure, but the best performance was obtained with the running-mean detrending. In contrast, the autoregressive method showed significant differences with respect to the reference method.
Our study was based on the idea of a comparison between different detrending methods, each being a filter based on a specific temporal window. Thresholds for all temporal windows change, for example, as a function of the surface characteristics of the site and/or as a function of the atmospheric stability conditions. Therefore, threshold parameters must be calibrated accurately for every dataset. However, in conclusion, if the spectral filter method is not used, linear detrending and the running-mean method seem to be better detrending procedures for time-series data than the autoregressive filter (or mean removal), and in particular, the running-mean method is suitable for calculating the particle flux.
References
Alberto MCR, Wassmann R, Buresh RJ, Quilty JR, Correa TQ Jr, Sandro JM, Arloo C, Centeno R (2014) Measuring methane flux from irrigated rice fields by eddy covariance method using open-path gas analyzer. Field Crop Res 160:12–21
Andreas EL, Geiger C, Trevĩno G, Claffey K (2008) Identifying non-stationarity in turbulence series. Boundary-Layer Meteorol 127:37–56
Aubinet M (2008) Eddy covariance \(\text{ CO }_{2}\) flux measurements in nocturnal conditions: an analysis of the problem. Ecol Appl 18:1368–1378
Baldocchi D (2003) Assessing the eddy covariance technique for evaluating carbon dioxide exchange rates of ecosystems: past, present and future. Glob Change Biol 9:479–492
Baldocchi DD, Falge E, Gu L, Olson R, Hollinger D, Running S, Anthoni P, Bernhofer C, Davis K, Evans R, Fuentes J, Goldstein A, Katul G, Law B, Lee X, Malhi Y, Meyers T, Munger W, Oechel W, Paw UKT, Pilegaard K, Schmid HP, Valentini R, Verma S, Vesala T, Wilson K, Wofsy S (2001) FLUXNET: a new tool to study the temporal and spatial variability of ecosystem-scale carbon dioxide, water vapour and energy flux densities. Bull Am Meteorol Soc 82:2415–2435
Barnhart BL, Eichinger WE, Prueger JH (2012) A new eddy-covariance method using empirical mode decomposition. Boundary-Layer Meteorol 145:369–382
Bell TG, De Bruyn W, Marandino CA, Miller SD, Law CS, Smith MJ, Saltzman ES (2015) Dimethylsulfide gas transfer coefficients from algal blooms in the Southern Ocean. Atmos Chem Phys 15:1783–1794
Bendat JS, Piersol AG (1958) Measurement and analysis of random data. Wiley, New York
Buzorius G, Rannik Ü, Mäkelä JM, Keronen P, Vesala T, Kulmala M (2000) Vertical aerosol fluxes measured by the eddy covariance method and deposition of nucleation mode particles above a Scots pine forest in southern Finland. J Geophys Res 105:19905–19916
Camarori P, Schuepp P, Desjardins R, MacPherson I (1994) Structural analysis of airborne flux estimates over a region. J Clim 7:627–640
Cava D, Giostra U, Siqueira M, Katul G (2004) Organised motion and radiative perturbations in the nocturnal canopy sublayer above an even-aged pine forest. Boundary-Layer Meteorol 112:129–157
Cava D, Donateo A, Contini D (2014) Combined stationarity index for the estimation of turbulent fluxes of scalars and particles in the atmospheric surface layer. Agric For Meteorol 194:88–103
Cava D, Giostra U, Katul G (2015) Characteristics of gravity waves over an Antarctic ice sheet during an austral summer. Atmosphere 6:1271–1289
Christen A (2014) Atmospheric measurement techniques to quantify greenhouse gas emissions from cities. Urban Clim 10:241–260
Conte M, Donateo A, Dinoi A, Belosi F, Contini D (2015) Influence of nucleation events on number particles fluxes and size distributions in south-eastern Italy during summer season. Atmosphere 6:942–959
Contini D, Donateo A, Belosi F, Grasso FM, Santachiara G, Prodi F (2010) Deposition velocity of ultrafine particles measured with the eddy-correlation method over the Nansen Ice Sheet (Antarctica). J Geophys Res Atmos 115:D16202
Contini D, Donateo A, Elefante C, Grasso FM (2012) Analysis of particles and carbon dioxide concentrations and fluxes in an urban area: correlation with traffic rate and local micrometeorology. Atmos Environ 46:25–35
Damay PE, Maro D, Coppalle A, Lamaud E, Connan O, Hebert D, Talbaut M, Irvine M (2009) Size-resolved eddy covariance measurements of fine particle vertical fluxes. J Aerosol Sci 40:1050–1058
Detto M, Verfaillie J, Anderson F, Xu L, Baldocchi D (2011) Comparing laser-based open- and closed-path gas analyzers to measure methane fluxes using the eddy covariance method. Agric For Meteorol 151:1312–1324
Deventer MJ, Held A, El-Madanya TS, Klemm O (2015a) Size-resolved eddy covariance fluxes of nucleation to accumulation mode aerosol particles over a coniferous forest. Agric For Meteorol 214–215:328–340
Deventer MJ, El-Mandany T, Griessbaum F, Klemm O (2015b) One-year measurement of size-resolved particle fluxes in an urban area. Tellus 67B:25531
Donateo A, Contini D (2014) Correlation of dry deposition velocity and friction velocity over different surfaces for PM2.5 and particle number concentrations. Adv Meteorol. doi:10.1155/2014/760393
Donateo A, Contini D, Belosi F, Gambaro A, Santachiara G, Cesari D, Prodi F (2012) Characterization of PM2.5 concentrations and turbulent fluxes on an island in the Venice lagoon using high temporal resolution measurements. Meteorol Z 21:385–398
Dorsey JR, Nemitz E, Gallagher MW, Fowler D, Williams PI, Bower KN, Beswick KM (2002) Direct measurements and parameterisation of aerosol flux, concentration and emission velocity above a city. Atmos Environ 36:791–800
Fairall CW (1984) Interpretation of eddy correlation measurements of particulate deposition and aerosol flux. Atmos Environ 18:1329–1337
Famulari D, Nemitz E, Di Marco C, Phillips GJ, Thomas R, House E, Fowler D (2010) Eddy-covariance measurements of nitrous oxide fluxes above a city. Agric For Meteorol 150:786–793
Farmer DK, Kimmel JR, Phillips G, Docherty KS, Worsnop DR, Sueper D, Nemitz E, Jimenez JL (2011) Eddy covariance measurements with high-resolution time-of-flight aerosol mass spectrometry: a new approach to chemically resolved aerosol fluxes. Atmos Meas Tech 4:1275–1289
Farmer DK, Chen Q, Kimmel JR, Docherty KS, Nemitz E, Artaxo PA, Cappa CD, Martin ST, Jimenez JL (2013) Chemically resolved particle fluxes over tropical and temperate forests. Aerosol Sci Technol 47:818–830
Ferrara RM, Loubet B, Di Tommasi P, Bertolini T, Magliulo V, Cellier P, Eugster W, Rana G (2012) Eddy covariance measurement of ammonia fluxes: comparison of high frequency correction methodologies. Agric For Meteorol 158–159:30–42
Finnigan JJ, Clement R, Malhi Y, Leuning R, Cleugh HA (2003) A re-evaluation of long-term flux measurement techniques. Part 1: Averaging and coordinate rotation. Boundary-Layer Meteorol 107:1–48
Foken T, Leuning R, Oncley SP, Mauder M, Aubinet M (2012) Corrections and data quality control. In: Aubinet M, Vesala T, Papale D (eds) Eddy covariance: a practical guide to measurement and data analysis. Springer, Dordrecht, pp 85–132
Gallagher MW, Nemitz E, Dorsey JR, Fowler D, Sutton MA, Flynn M, Duyzer J (2002) Measurements and parameterisations of small aerosol deposition velocities to grassland, arable crops, and forest: influence of surface roughness length on deposition. J Geophys Res 107:AAC8-10
Gash JHC, Culf AD (1996) Applying a linear detrend to eddy correlation data in real time. Boundary-Layer Meteorol 79:301–306
Grönlund A, Nilsson ED, Koponen IK, Virkkula A, Hansson ME (2002) Aerosol dry deposition measured with eddy covariance technique at Wasa and Aboa, Dronning Maud Land, Antarctica. Ann Glaciol 35:355–361
Held A (2014) Spectral analysis of turbulent aerosol fluxes by Fourier transform, wavelet analysis, and multiresolution decomposition. Boundary-Layer Meteorol 151:79–94
Horst TW (1997) A simple formula for attenuation of eddy fluxes measured with first-order-response scalar sensor. Boundary-Layer Meteorol 82:219–233
Jarvi L, Rannik Ü, Mammarella I, Sogachev A, Aalto PP, Keronen P, Siivola E, Kulmala M, Vesala T (2009) Annual particle flux observations over a heterogeneous urban area. Atmos Chem Phys 9:7847–7856
Jenkins GM, Watts DG (1968) Spectral analysis and its applications. Holden-Day, Oakland, 525 pp
Kaimal and Finnigan (1994) Atmospheric boundary layer flows. Oxford University Press, Oxford, 289 pp
Kanakidou M, Seinfeld JH, Pandis SN, Barnes I, Dentener FJ, Facchini MC, Van Dingenen R, Ervens B, Nenes A, Nielsen CJ, Swietlicki E, Putaud JP, Balkanski Y, Fuzzi S, Horth J, Moortgat GK, Winterhalter R, Myhre CEL, Tsigaridis K, Vignati E, Stephanou EG, Wilson J (2005) Organic aerosol and global climate modelling: a review. Atmos Chem Phys 5:1053–1123
Kolmogorov AN (1941) The local structure of turbulence in incompressible viscous fluid for very large Reynolds number. Dokl Akad Nauk 30:9–13
Legates DR, McCabe GJ (1999) Evaluating the use of “goodness-of-fit” measures in hydrologic and hydroclimatic model validation. Water Resour Res 35(1):233–241
Mahrt L (1998) Flux sampling errors for aircraft and towers. J Atmos Ocean Technol 15:416–429
Mahrt L (2010) Variability and maintenance of turbulence in the very stable boundary layer. Boundary-Layer Meteorol 135:1–18
Mahrt L (2014) Stably stratified atmospheric boundary layers. Annu Rev Fluid Mech 46:23–45
Mårtensson EM, Nilsson ED, Buzorius G, Johansson C (2006) Eddy covariance measurements and parameterisation of traffic related particle emissions in an urban environment. Atmos Chem Phys 6:769–785
Massman WJ (2000) A simple method for estimating frequency response corrections for eddy covariance systems. Agric For Meteorol 104:185–198
Mauder M, Oncley SP, Vogt R, Weidinger T, Ribeiro L, Bernhofer C, Foken T, Kohsiek W, De Bruin HAR, Liu H (2007) The energy balance experiment EBEX-2000. Part II: intercomparison of eddy-covariance sensors and post-field data processing methods. Boundary-Layer Meteorol 123:29–54
Mauder M, Cuntz M, Drüe C, Graf A, Rebmann C, Schmid HP, Schmidt M, Steinbrecher R (2013) A strategy for quality and uncertainty assessment of long-term eddy-covariance measurements. Agric For Meteorol 169:122–135
McMillen RT (1988) An eddy correlation technique with extended applicability to non-simple terrain. Boundary-Layer Meteorol 43:231–245
Moncrieff J, Clement R, Finnigan J, Meyers T (2004) Averaging, detrending, and filtering of eddy covariance time series. In: Lee X, Massman WJ, Law B (eds) Handbook of micrometeorology: a guide for surface flux measurement and analysis. Kluwer Academic Publishers, Dordrecht, 250 pp
Monin AS, Yaglom AM (1971) Statistics fluid mechanics. The MIT Press, Cambridge, 769 pp
Nash JE, Sutcliffe JV (1970) River flow forecasting through conceptual models: part 1. A discussion of principles. J Hydrol 10(3):282–290
Nemitz E, Jimenez JL, Huffman JA, Ulbrich IM, Canagaratna MR, Worsnop DR, Guenther AB (2008) An eddy-covariance system for the measurement of surface/atmosphere exchange fluxes of submicron aerosol chemical species—first application above an urban area. Aerosol Sci Technol 42:636–657
Nilsson ED, Rannik Ü (2001) Turbulent aerosol fluxes over the Arctic Ocean 1. Dry deposition over sea and pack ice. J Geophys Res Atmos 106:32125–32137
Rannik Ü (1998) On the surface layer similarity at a complex forest site. J Geophys Res 103:8685–8697
Rannik Ü, Vesala T (1999) Autoregressive filtering versus linear detrending in estimation of fluxes by the eddy covariance method. Boundary-Layer Meteorol 91:259–280
Rannik Ü, Zhou L, Zhou P, Gierens R, Mammarella I, Sogachev A, Boy M (2015) Aerosol dynamics within and above forest in relation to turbulent transport and dry deposition. Atmos Chem Phys Discuss 15:19367–19403
Schmidt A, Klemm O (2008) Direct determination of highly size-resolved turbulent particle fluxes with the disjunct eddy covariance method and a 12 stage electrical low pressure impactor. Atmos Chem Phys 8:7405–7417
Seinfeld JH, Pandis SN (2006) Atmospheric chemistry and physics: from air pollution to climate change. Wiley, New York
Singh J, Knapp HV, Demissie M (2004) Hydrologic modelling of the Iroquois River watershed using HSPF and SWAT. Illinois State Water Survey. www.sws.uiuc.edu/pubdoc/CR/ISWSCR2004-08.pdf
Stull RB (1988) An introduction to boundary layer meteorology. Kluwer Academic Publishers, Dordrecht, 666 pp
Sun K, Tao L, Miller DJ, Zondlo MA, Shonkwiler KB, Nash C, Ham JM (2015) Open-path eddy covariance measurements of ammonia fluxes from a beef cattle feedlot. Agric For Meteorol 213:193–202
Suzuki T, Ichii K (2010) Evaluation of a terrestrial carbon cycle submodel in an earth system model using networks of eddy covariance observations. Tellus 62B:729–742
Textor C, Schulz M, Guibert S, Kinne S, Balkanski Y, Bauer S, Berntsen T, Berglen T, Boucher O, Chin M, Dentener F, Diehl T, Easter R, Feichter H, Fillmore D, Ghan S, Ginoux P, Gong S, Grini A, Hendricks J, Horowitz L, Huang P, Isaksen I, Iversen I, Kloster S, Koch D, Kirkeväg A, Kristjansson JE, Krol M, Lauer A, Lamarque JF, Liu X, Montanaro V, Myhre G, Penner J, Pitari G, Reddy S, Seland Ø, Stier P, Takemura T, Tie X (2006) Analysis and quantification of the diversities of aerosol life cycles within AeroCom. Atmos Chem Phys 6:1777–1813
Ueyama M, Ichii K, Hirata R, Takagi K, Asanuma J, Machimura T, Nakai Y, Saigusa N, Takahashi Y, Hirano T (2010) Simulating carbon and water cycles of larch forests in East Asia by the Biome-BGC model with AsiaFlux data. Biogeosciences 7:959–977
Valentini R, Matteucci G, Dolman AJ, Schulze ED, Rebmann C, Moors EJ, Granier A, Gross P, Jensen NO, Pilegaard K, Lindroth A, Grelle A, Bern-Hofer C, Grunwald T, Aubinet M, Ceulemans R, Kowalski AS, Vesala T, Rannik Ü, Berbigier P, Loustau D, Guomundsson J, Thorgeirsson H, Ibrom A, Morgenstern K, Clement R, Moncrieff J, Montagnani L, Minerbi S, Jarvis PG (2000) Respiration as the main determinant of carbon balance in European forests. Nature 404:861–865
Van de Wiel BJH, Ronda RJ, Moene AF, de Bruin HAR, Holtslag AAM (2002) Intermittent turbulence and oscillations in the stable boundary layer over land. Part I: bulk model. J Atmos Sci 59:942–958
Vickers D, Mahrt L (2003) The cospectral gap and turbulent flux calculations. J Atmos Ocean Technol 20:660–672
Webb EK, Pearman GI, Leuning R (1980) Correction of flux measurements for density effects due to heat and water-vapour transfer. Q J R Meteorol Soc 106:85–100
Wesely ML, Hicks BB (2000) A review of the current status of knowledge on dry deposition. Atmos Environ 34:2261–2282
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Donateo, A., Cava, D. & Contini, D. A Case Study of the Performance of Different Detrending Methods in Turbulent-Flux Estimation. Boundary-Layer Meteorol 164, 19–37 (2017). https://doi.org/10.1007/s10546-017-0243-4
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DOI: https://doi.org/10.1007/s10546-017-0243-4