Abstract
Main conclusion
Pepper leucine-rich repeat protein (CaLRR1) interacts with defense response proteins to regulate plant cell death and immunity. This review highlights the current understanding of the molecular functions of CaLRR1 and its interactor proteins.
Plant cell death and immune responses to microbial pathogens are controlled by complex and tightly regulated molecular signaling networks. Xanthomonas campestris pv. vesicatoria (Xcv)-inducible pepper (Capsicum annuum) leucine-rich repeat protein 1 (CaLRR1) serves as a molecular marker for plant cell death and immunity signaling. In this review, we discuss recent advances in elucidating the functional roles of CaLRR1 and its interacting plant proteins, and understanding how they are involved in the cell death and defense responses. CaLRR1 physically interacts with pepper pathogenesis-related proteins (CaPR10 and CaPR4b) and hypersensitive-induced reaction protein (CaHIR1) to regulate plant cell death and defense responses. CaLRR1 is produced in the cytoplasm and trafficked to the extracellular matrix. CaLRR1 binds to CaPR10 in the cytoplasm and CaPR4b and CaHIR1 at the plasma membrane. CaLRR1 synergistically accelerates CaPR10-triggered hypersensitive cell death, but negatively regulates CaPR4b- and CaHIR1-triggered cell death. CaHIR1 interacts with Xcv filamentous hemagglutinin (Fha1) to trigger disease-associated cell death. The subcellular localization and cellular function of these CaLRR1 interactors during plant cell death and defense responses were elucidated by Agrobacterium-mediated transient expression, virus-induced gene silencing, and transgenic overexpression studies. CaPR10, CaPR4b, and CaHIR1 positively regulate defense signaling mediated by salicylic acid and reactive oxygen species, thereby activating hypersensitive cell death and disease resistance. A comprehensive understanding of the molecular functions of CaLRR1 and its interacting protein partners in cell death and defense responses will provide valuable information for the molecular genetics of plant disease resistance, which could be exploited as a sustainable disease management strategy.
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Introduction
Plants have evolved complex signal perception and resistance mechanisms to defend against microbial pathogen attack. During avirulent pathogen infection, plant resistance (R) proteins recognize pathogen avirulence (Avr) factors and initiate the hypersensitive response (HR) and localized programmed cell death (PCD) at the infection site (Coll et al. 2011). HR is the strongest plant strategy to prevent the growth and spread of invasive pathogens into healthy tissues. The hypersensitive cell death response includes a transient oxidative burst; rapid ion fluxes; mitogen-activated protein kinase (MAPK) signaling; accumulation of signaling molecules such as nitric oxide, salicylic acid (SA), and jasmonic acid (JA); induction of pathogenesis-related (PR) proteins; phytoalexin accumulation; and antimicrobial compound synthesis (Beers and McDowell 2001; Lam et al. 2001; Mur et al. 2008; Spoel and Dong 2008; Melech-Bonfil and Sessa 2010; Coll et al. 2011). By contrast, compatible plant-pathogen interactions lead to susceptible cell death relatively late during the course of infection, which enables the growth and spread of invasive pathogens into healthy tissues. There is convincing experimental evidence to indicate that host-controlled PCD is also closely associated with the onset of susceptible cell death and disease development in plants (Yao et al. 2002; Greenberg and Yao 2004; Choi et al. 2011).
Most resistance (R) genes encode members of an extremely polymorphic superfamily of nucleotide-binding leucine-rich repeat (NLR) receptors (Maekawa et al. 2011; Dangl et al. 2013). The leucine-rich repeat (LRR) domain is a conserved feature of many R proteins, including NLR-type proteins (Dangl and Jones 2001). LRRs are present in the sequences of more than 2000 proteins with diverse function and origin in viruses, bacteria, archaea, and eukaryotes (Enkhbayar et al. 2004). The LRR domain provides a structural framework for diverse and specific molecular interactions. LRR proteins function in an array of developmental and immune signaling pathways and are involved in receptor/coreceptor complex formation (Kobe and Deisenhofer 1994; Jaillaisa et al. 2011). Some NLR proteins directly bind to pathogen-associated proteins, primarily pathogen effector molecules, to induce basal defense responses and effector-triggered immunity (ETI) in resistant host genotypes (DeYoung and Innes 2006; Jones and Dangl 2006; Han and Hwang 2017).
The pepper (Capsicum annuum)–Xanthomonas campestris pv. vesicatoria (Xcv) pathosystem is useful for exploring the molecular and cellular bases of plant cell death and defense responses to microbial pathogens (Han and Hwang 2017). Infection with the avirulent (incompatible) Xcv strain Bv5-4a carrying the effector AvrBsT activates rapid and distinct expression of a repertoire of cell death- and defense-related genes in pepper plants (Hong et al. 2008; Choi and Hwang 2011, 2015; Kim et al. 2014; Kim and Hwang 2015a, b; Han and Hwang 2017). The pepper LRR1 (CaLRR1) gene is induced by pathogens and encodes a small extracellular protein containing a single LRR domain with five tandem repeats of a 24 amino acid LRR motif (Jung et al. 2004). CaLRR1 lacks a kinase domain, although it exhibits sequence homology to RLKs, and is involved in plant cell death and defense responses (Jung et al. 2004; Jung and Hwang 2007). CaLRR1 serves as a molecular marker for microbial perception in pepper and can be detected in pepper leaves infected with the avirulent Xcv strain Bv5-4a using an array-based differential hybridization technique (Jung and Hwang 2000).
The pepper PR proteins CaPR10 (Choi et al. 2012) and CaPR4b (Hwang et al. 2014) and the pepper HR-induced protein CaHIR1 (Jung and Hwang 2007; Choi et al. 2011) are host proteins that physically interact with CaLRR1 during cell death and defense responses in plants. CaPR10, CaPR4b, and CaHIR1 can be isolated from pepper leaves and identified using yeast two-hybrid screening (Fields and Song 1989), bimolecular fluorescence complementation (BiFC) (Walter et al. 2004), and co-immunoprecipitation (Co-IP) assays. Cytoplasmic CaPR10 functions in HR-like cell death and defense signaling, and this activity is enhanced by interaction with CaLRR1 (Choi et al. 2012). CaPR4b interacts with CaLRR1 in the plasma membrane to suppress CaPR4b-triggered cell death and defense response (Hwang et al. 2014). CaLRR1 interacts with CaHIR1 during pathogenesis and suppresses CaHIR1-induced cell death (Jung and Hwang 2007). CaLRR1 and CaHIR1 proteins are proposed to act as cell death regulators associated with plant immunity and disease, respectively (Choi et al. 2011).
In this review, we discuss the identification and functional characterization of CaLRR1 and its interacting partner proteins during cell death response and immunity in plants (Table 1). Molecular and cellular responses of transgenic Arabidopsis plants overexpressing these CaLRR1-interacting pepper proteins are analyzed to provide insights into the crucial roles of cell death-associated pepper proteins in a heterologous cellular system.
Structures and molecular functions of leucine-rich repeat proteins
LRR domains are present in the primary structures of many biologically active proteins involved in perception and signal transduction networks, including immune receptors, ubiquitin ligases, hormone receptors, enzyme inhibitors, cell adhesion molecules, and ribosome-binding proteins (Kobe and Kajava 2001; Napier 2004; Padmanabhan et al. 2009; Eitas and Dangl 2010). The ubiquity of the LRR domain may be due to its ability to interact with a wide range of substrates, including proteins, nucleic acids, lipids, and small hormone molecules (Helft et al. 2011). The LRR structural motif contains 20–30 amino acids with a characteristic repetitive sequence pattern that is enriched with the hydrophobic amino acid leucine (Bella et al. 2008). A defining feature of the LRR motif is the 24-residue consensus sequence (LxxLxxLxxLxLxxNxLxGxIPxx; x is any amino acid) (Jones and Jones 1997). In plants and animals, LRRs occur in tandem arrays of 1 to >40 LRR motifs. LRRs contain leucine (L) or other hydrophobic residues at regular intervals and regularly spaced proline (P) and asparagine (N) (Kobe and Deisenhofer 1994; Jung et al. 2004).
LRRs are an important feature of the receptors that mediate the two major plant immune systems, pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI), and effector-triggered immunity (ETI) (Jones and Dangl 2006). Many plant cell surface receptors that recognize microbe- or pathogen-associated molecular pattern (MAMP or PAMP) molecules contain LRRs as the bulk of their extracellular recognition domain and intracellular protein kinase domain (Boller and Felix 2009; Nicaise et al. 2009). Different classes of extracellular LRR proteins have been identified in plants (Zhou et al. 2009). Receptor-like kinases (RLKs) (Shiu and Bleecker 2003) contain an extracellular LRR domain, a transmembrane α-helical structure, and an intracellular kinase domain. Receptor-like proteins (RLPs) (Wang et al. 2008) contain an extracellular LRR domain and a C-terminal membrane anchor, but lack the intracellular kinase domain. RLKs and RLPs are involved in diverse biological processes in plants, such as innate immunity, phytohormone responses, cell proliferation, and self-incompatibility (Tor et al. 2009). Some RLKs (e.g., FLS2 and Xa21) recognize pathogen-derived molecules and lead to R gene-triggered resistance in plants (Boller and Felix 2009; Monaghan and Zipfel 2012). RLPs (e.g., Cf-9, RPP27, and EIX1) mediate disease resistance by recognizing pathogen-derived molecules (van der Hoorn et al. 2005). Polygalacturonase-inhibiting proteins (PGIPs) share high homologies with a class of animal extracellular LRR proteins named small leucine-rich proteoglycans (SLRPs) (Lorenzo et al. 2001). PGIPs are soluble proteins of the extracellular matrix and contain LRRs in the central domain flanked by cysteine-rich clusters. PGIPs recognize and bind fungal polygalacturonases to prevent plant cell wall degradation and they also induce plant defense responses (Alexandersson et al. 2011). The LRR modules are responsible for PGIP recognition of pathogenic factors; solvent-exposed residues in the LRR β-strand/β-turn motifs are the determinants of recognition specificity (Lorenzo et al. 2001).
LRRs are central for recognition specificity in the large, diverse superfamily of plant intracellular nucleotide-binding (NB)-LRR (NLR) receptors known as resistance (R) proteins. R proteins recognize specific pathogen effectors and then modify their host plant targets (or decoys) to initiate strong defense responses such as ETI (Dangl et al. 2013). NLR-type proteins have intracellular LRR domains that determine their cytoplasmic localization (Gururani et al. 2012). Small LRR proteins without any additional functional structures are involved in the regulation of plant resistance to pathogen infection. A number of small LRR proteins are induced in plant cells by biotic and/or abiotic stimuli. The following small LRR proteins have been identified in solanaceous plants: tobacco NtLRR2 (accession no. EF535611; Xu et al. 2009), tobacco NtLRP1 (accession no. DQ118081; Jacques et al. 2006), tomato LeLRP (accession no. X95269; Tornero et al. 1996), potato StRSI7 (accession no. JQ315227; Jung et al. 2004), and pepper CaLRR1 (accession no. AY237117; Jung et al. 2004), as well as rice OsLRR1 (accession no. AAO85403; Zhou et al. 2009). These small LRR proteins share structural features such as signal peptides (SPs) and leucine-zipper (LZ) and LRR motifs in the conserved regions, although the domain sizes slightly differ (Fig. 1a). The solanaceous small LRR proteins contain five tandem LRR motifs within the consensus sequence (LxxLxxLxxLxLxxNxLxGxIPxx) (Fig. 1a). The first LRR is imperfect and begins with valine (V) in the first position. The N-terminus contains a putative SP of 23–34 amino acid residues, and 4 leucine (L) residues in the LZ domain are conserved in the SP and the first imperfect LRR motif. In CaLRR1, the interstitial variable residues (i.e., the x residues in the LxxLxLxxN β-strand/β-turn motif) are not conserved and there are no transmembrane or kinase domains. Tobacco NtLRR2 and NtLRP1, tomato LeLRP, and potato StRSI7 have one imperfect and four perfect LRR motifs, similarly to the pepper CaLRR1. NtLRP1 is a relatively large small LRR protein with a proline-rich region at the C-terminus. There is high homology in the primary amino acid sequences of CaLRR1 and NtLRR2 (Fig. 1a, b). Small LRR proteins identified in monocots include sorghum SbLRR1 and SbLRR2, rice OsLRR1 and OsLRR2, and maize ZmLRR2 (Zhu et al. 2013). SbLRR2 has an SP at the N-terminus and six LRR motifs at the C-terminus, but it lacks the LZ structure. Rice OsLRR1 contains an SP, an LZ motif, and five LRR motifs, and is structurally similar to pepper CaLRR1 (Fig. 1a, b).
Identification and molecular functions of pepper leucine-rich repeat protein 1
Differential hybridization is used to isolate specific cDNAs that are differentially or strongly expressed in pepper leaves infected with avirulent Xcv strain Bv5-4a (Jung and Hwang 2000). This is an effective strategy for isolation of a large number of differentially expressed defense-related genes in plants. Automated partial cDNA sequencing is conducted on randomly selected cDNAs to generate expressed sequence tags (ESTs) for the functional identification, mapping, and comparison of all plant genes. A number of pepper cDNAs have been isolated that appear to correspond to mRNAs that increased in abundance during avirulent Xcv strain Bv5-4a infection (Jung and Hwang 2000). The DNA sequence of CaLRR1 [accession numbers AF082727 (EST clone) and AY237117 (full-length cDNA)], which is strongly induced by pathogen infection in pepper leaves, displays high homology with the small LRR proteins SbLRR and LeLRP (Hipskind et al. 1996; Tornero et al. 1996). These LRRs comprise approximately 65% of the entire mature protein. The first LRR is imperfect and begins with valine at residue 65. CaLRR1 also contains five potential N-linked glycosylation sites on asparagine residues at positions 74, 96, 109, 168, and 182. The pepper genome contains at least two or more copies of genes homologous to CaLRR1 (Jung et al. 2004).
RNA gel-blot analyses of CaLRR1 expression in pepper leaves infected with various pathogens indicate that CaLRR1 is induced by pathogens and suggest that CaLRR1 is involved in limiting the rate of pathogen infection (Jung et al. 2004). More importantly, CaLRR1 induction is higher in incompatible than compatible interactions after infection with X. campestris pv. vesicatoria, Phytophthora capsici, Colletotrichum coccodes, and Colletotrichum gloeosporioides. Inoculation with non-plant pathogenic bacteria (Pseudomonas fluorescens and Escherichia coli) efficiently triggers CaLRR1 expression in pepper leaf tissues (Jung et al. 2004). These results suggest that diverse types of MAMP or PAMP molecules trigger CaLRR1 expression and lead to multiple defense responses. SbLRR2, OsLRR1, NtLRR2, and LeLRP are differentially induced by Colletotrichum sublineolum, X. oryzae pv. oryzae, tobacco mosaic virus, and citrus exocortis viroid, respectively (Tornero et al. 1996; Xu et al. 2009; Zhou et al. 2009; Zhu et al. 2015). However, it is not fully understood whether MAMP/PAMP molecules are required for the induction of small LRR genes in host plant cells.
Salicylic acid (SA) acts as a key endogenous signal molecule for the induction of defense-related genes and systemic acquired resistance (SAR) in a variety of plant species (Durrant and Dong 2004; Vlot et al. 2009; Dempsey et al. 2011). Exogenous application of SA or SA analogs induces PR gene expression and enhances disease resistance in plants (Cao et al. 1994). JA and ethylene (ET) act either independently or cooperatively to induce resistance and defense-related gene expression. In addition to these synergistic interactions, JA and/or ET can interact antagonistically with SA (Grant and Jones 2009). Treatment with SA, methyl jasmonate (MeJA) and ET does not activate CaLRR1 expression in pepper plants (Jung et al. 2004), indicating that CaLRR1 expression is not regulated by defense signaling pathways activated by these molecules. SbLRR2 encodes a small extracellular LRR protein that is strongly induced by treatment with exogenous MeJA, but not by SA or the ET precursor 1-aminocyclopropane-1-carboxylic acid (ACC), in sorghum seedlings (Zhu et al. 2015). CaLRR1 is induced by treatment with high salinity, abscisic acid (ABA), and wounding. NtLRR2 is induced in tobacco by high salinity (Xu et al. 2009), and wounding of rice leaves triggers OsLRR1 expression (Zhou et al. 2009). ABA is proposed to be a crucial signaling molecule to activate disease resistance in many plant species (Fan et al. 2009). An in situ hybridization study reported that CaLRR1 transcripts were localized in leaf phloem tissues, stems, and green fruits during pathogen infection and after treatment with ABA in pepper plants (Jung et al. 2004). The localization of CaLRR1 transcripts in phloem cells suggests that CaLRR1 functions in phloem cells.
Identification and molecular functions of the pepper pathogenesis-related and hypersensitive-induced reaction proteins that interact with CaLRR1
Physical interactions between proteins have a critical role in the signaling cascades that activate plant defense responses to microbial pathogens (Cantu et al. 2013). LRR proteins may be involved in the protein–protein communication networks for plant innate immunity (Padmanabhan et al. 2009; Rebsamen et al. 2013). To identify proteins that interact with pepper small LRR proteins, a GAL 4-based yeast two-hybrid system was used with CaLRR1 as bait to screen a prey cDNA library prepared from pepper leaves infected with avirulent Xcv strain Bv5-4a (Jung and Hwang 2007; Choi et al. 2012; Hwang et al. 2014). Bimolecular fluorescence complementation (BiFC; Walter et al. 2004) and co-immunoprecipitation (Co-IP) assays can be used to verify specific interactions between CaLRR1 and other proteins in planta. These yeast and in planta studies determined that CaLRR1 (Jung et al. 2004) physically interacted with the pepper PR proteins CaPR10 (Choi et al. 2012) and CaPR4a (Hwang et al. 2014) and the pepper HR-induced protein CaHIR1 (Jung and Hwang 2007; Choi et al. 2011). Therefore, CaPR10, CaPR4b, and CaHIR1 are identified as CaLRR1-interacting partners in pepper.
Pepper pathogenesis-related protein 10 (CaPR10)
CaPR10 is crucial for plant defense and cell death responses against microbial pathogens such as Colletotrichum acutatum, X. campestris pv. vesicatoria (Xcv), and tobacco mosaic virus (Park et al. 2004; Choi et al. 2012; Soh et al. 2012). Avirulent Xcv infection induces CaPR10 expression associated with HR-induced cell death (Choi et al. 2012). Transient expression of CaPR10 in pepper leaves induces partial necrotic cell death. Virus-induced gene silencing (VIGS) of CaPR10 in pepper disrupts the resistance responses to avirulent Xcv infection (Choi et al. 2012). Heterologous CaPR10 overexpression in Arabidopsis enhances resistance to Pseudomonas syringae pv. tomato and Hyaloperonospora arabidopsidis infection (Choi et al. 2012). CaPR10 is also distinctly induced by SA, JA, ET, and oxidative and osmotic stresses (Park et al. 2004). The PR10 protein level is significantly higher in the resistant maize inbred line CO441 infected with Fusarium graminearum than in the susceptible inbred B73 line (Mohammadi et al. 2011). ZmPR10 overexpression in transgenic Arabidopsis increases resistance to P. syringae pv. tomato infection (Xie et al. 2010). Transgenic peanut overexpressing ARAhPR10 exhibits reduced Aspergillus flavus colonization and aflatoxin content in seeds (Xie et al. 2013). Overexpression of pea PR10.1 in transgenic potato confers resistance to early dying disease caused by Verticillium albo-atrum or V. dahlia (Chang et al. 1993; Wang et al. 1999).
The PR protein PR10 is a member of the Bet v 1 allergen family and has ribonuclease and antimicrobial activity (Zhou et al. 2002; Park et al. 2004). Recombinant CaPR10 distinctly degrades torula yeast (Candida utilis) RNA (Choi et al. 2012), suggesting that CaPR10 possesses RNase activity. RNase activity is thought to be essential for the resistance response to microbial pathogens (Galiana et al. 1997; Shivakumar et al. 2000; Park et al. 2004). Recombinant CaPR10 exhibits antimicrobial activity against TMV and P. capsici in vitro (Park et al. 2004). Conserved PR10 motifs include phosphorylation sites that are characteristic of protein kinases (Bantignies et al. 2000; Ziadi et al. 2001). CaPR10 has a glycine-rich motif (GxGGxG) that forms an ATP- or a GTP-phosphate-binding loop (called the P-loop) at amino acid residues 46–51, and a consensus amino acid sequence (KAxExYL) in the C-terminal helix (Park et al. 2004). CaPR10 contains several putative phosphorylation sites at serine, threonine, and tyrosine residues. CaPR10 is phosphorylated by crude protein extracts from pepper leaves infected with avirulent Xcv Bv5-4a (Choi et al. 2012). TMV infection also leads to CaPR10 phosphorylation, a modification that may affect its RNase activity (Park et al. 2004). Together, we conclude that CaPR10 phosphorylation, RNase activity as well as antimicrobial activity are required for triggering cell death and defense responses in plants.
Pepper pathogenesis-related proteins 4b (CaPR4b)
The pepper PR protein CaPR4b is synthesized in the endoplasmic reticulum (ER), interacts with CaLRR1 at the plasma membrane, and is secreted into the apoplastic space (Hwang et al. 2014). CaPR4b contains a C-terminal BARWIN domain, which is a structural characteristic of BARWIN family proteins. CaPR4b also contains an ER signal containing 24 amino acid residues and an N-terminal chitin-binding domain (CBD). The CAPR4b BARWIN domain shares high sequence similarity with the BARWIN domain in BARWIN family proteins, which is referred to as PR4 (Friedrich et al. 1991). Notably, the BARWIN domain of PR4b is suggested to be involved in plant defense response to microbial pathogens such as Rhizoctonia solani and Magnaporthe oryzae (Zhu et al. 2006; Mukherjee et al. 2010). The CBD of CaPR4b is essential for CaPR4b binding to CaLRR1 in yeast and in planta (Hwang et al. 2014). BiFC and Co-IP assays show that CaPR4bCBD specifically binds to CaLRR1 at the plasma membrane. The BARWIN domain of CaPR4b is not required for in vitro and in vivo binding to CaLRR1.
CaPR4b has antifungal activity against pathogenic fungi, such as Alternaria brassicicola, Botrytis cinerea, Colletotrichum orbiculare, and Fusarium oxysporum f.sp. matthioli (Hwang et al. 2014). The in vitro antifungal activity against plant pathogenic fungi has been demonstrated for some plant PR4 proteins (Zhu et al. 2006; Mukherjee et al. 2010). Recombinant Wheatwin1, a wheat PR protein of class 4, exhibits antifungal activity against Fusarium culmorum, F. graminearum, and B. cinerea (Caruso et al. 2001; Bertini et al. 2009). Purified OsPR4b and Lycoris radiata LrPR4 have antifungal activity against R. solani (Zhu et al. 2006) and M. oryzae (Li et al. 2009), respectively.
The Arabidopsis PR4 gene depends on JA/ET and is involved in the defense response against infection by the necrotrophic fungus F. oxysporum (Trusov et al. 2009). Infection with another necrotrophic fungal pathogen, A. brassicicola, also strongly induces PR4 expression in Arabidopsis (Mukherjee et al. 2010). CaPR4b expression is rapidly and strongly induced in pepper leaves during Xcv infection (Hwang et al. 2014). Elicitor treatment with ET, SA, ABA, MeJA, NaCl, methyl viologen, wounding, and drought significantly induces CaPR4b gene expression. Among these elicitors of CaPR4b expression, the effect of ET is most pronounced in pepper leaves. Transient CaPR4b expression significantly induces programmed cell death (PCD) in Nicotiana benthamiana leaves. The PR4 gene is strongly induced in incompatible plant–pathogen interactions (Jacquard et al. 2009). Knock-down suppression of CaPR4b via VIGS leads to enhanced susceptibility to Xcv infection, which is accompanied by reductions in electrolyte leakage and oxidative burst. CaPR4b overexpression in Arabidopsis also enhances resistance to infection by virulent P. syringae pv. tomato DC3000 and H. arabidopsidis. The combined results indicate that CaPR4b acts as a positive regulator of plant basal defense and cell death responses to microbial pathogens (Hwang et al. 2014).
Pepper hypersensitive-induced reaction protein (CaHIR1)
The hypersensitive-induced reaction (HIR) proteins, along with the prohibitins and stomatins, belong to a PID (proliferation, ion, and death) superfamily involved in cell proliferation, ion channel activity, and cell death (Nadimpalli et al. 2000). These PID proteins share common features in their SPFH (stomatins, prohibitins, flotillins, and HflK/C) domains. The pepper CaHIR1 has an SPFH domain that contains putative transmembrane helices between amino acid residues 30 and 49 (Jung and Hwang 2007; Choi et al. 2011). Most HIR proteins including pepper CaHIR1 contain an N-myristoylation site at the N-terminus and putative transmembrane regions embedded in the band-7 domain. The plant HIR proteins are predicted to have an α-helical coil near their C-termini, which may act as a plug to regulate potassium ion channels (Nadimpalli et al. 2000).
HIR genes are differentially expressed in plant leaves during the development of spontaneous micro-HR lesions (Nadimpalli et al. 2000; Rostoks et al. 2003; Jung and Hwang 2007). HIR genes have been identified in plant cell death and defense responses to biotic and abiotic stresses in several plant species, including tobacco, maize, barley, rice, wheat, pepper, soybean, and Arabidopsis (Karrer et al. 1998; Nadimpalli et al. 2000; Rostoks et al. 2003; Jung and Hwang 2007; Yu et al. 2008; Zhou et al. 2009, 2010; Qi et al. 2011; Xiang et al. 2015). The three maize HIR genes Zm-hir1, Zm-hir2, and Zm-hir3 share strong sequence homology with NG1 (Nadimpalli et al. 2000). Zm-hir3 is strongly induced in the maize disease lesion mimic mutant Les9, suggesting a possible role in HR-induced cell death. Constitutively elevated barley Hv-hir3 expression in lesion mimicking barley mutants is suggested to mediate spontaneous cell death (Rostoks et al. 2003). Pepper CaHIR1 elicits spontaneous cell death in plants (Jung and Hwang 2007). CaHIR1 expression triggers cell death responses associated with disease and immunity during X. campestris pv. vesicatoria (Xcv) infection (Choi et al. 2011). Wheat TaHIR2 and TaHIR3 are strongly induced in wheat leaves by Puccinia striiformis infection (Zhang et al. 2009, 2011). Rice OsHIR1 is induced in rice leaves by Xanthomonas oryzae pv. oryzae infection (Zhou et al. 2010). Defense responses activated by the OsHIR1–OsLRR1 protein complex are well documented in rice plants during X. oryzae pv. oryzae infection (Zhou et al. 2009). Soybean GmHIR1, GmHIR3, and GmHIR4 are more rapidly expressed in response to Phytophthora sojae infection in the resistant line than in the susceptible line (Xiang et al. 2015). The Arabidopsis HIR genes are significantly induced by MAMPs such as the bacterial flagellin fragment flg22 (Qi et al. 2011). AtHIR proteins are physically associated with the immune receptor RPS2 and quantitatively contribute to RPS2-mediated ETI (Qi et al. 2011).
Pepper CaHIR1 acts as a positive regulator of PCD associated with plant immunity and disease (Jung and Hwang 2007; Choi et al. 2011). CaHIR1-overexpressing transgenic Arabidopsis plants exhibit elevated defense responses to challenge with the virulent bacterial pathogen P. syringae pv. tomato and the oomycete H. arabidopsidis (Jung and Hwang 2007; Jung et al. 2008). However, CaHIR1-overexpressing transgenic plants are highly susceptible to infection by the necrotrophic fungus B. cinerea (Jung et al. 2008). Augmented SA-dependent defenses of CaHIR1-overexpressing plants antagonistically suppress JA/ET-dependent signaling, which is usually responsible for defense against necrotrophic pathogen infection. Overexpression of AtHIR1 and AtHIR2, and rice OsHIR1 in Arabidopsis enhances resistance to virulent P. syringae pv. tomato infection, but an enhanced susceptibility to necrotrophic pathogens could not be excluded (Zhou et al. 2010; Qi et al. 2011). By contrast, CaHIR1 silencing distinctly disrupts hypersensitive and susceptible cell death in pepper plants (Choi et al. 2011). In addition, CaHIR1 interacts with the Xcv virulence factor filamentous hemagglutinin-like protein (Fha1), which induces disease susceptibility and cell death and suppresses PR gene expression in pepper plants (Choi et al. 2013). Fha proteins of plant pathogens such as Erwinia chrysanthemi, Xanthomonas axonopodis pv. citri, and Xylella fastidiosa function as virulence factors by modulating surface attachment, biofilm formation, and cell-to-cell aggregation during host plant infection (Rojas et al. 2002; Guilhabert and Kirkpatrick 2005; Gottig et al. 2009). Pepper cell death is triggered in leaf tissues by Xcv-releasing Fha1 (Choi et al. 2013). Xcv Fha1 enhances susceptible host cell death, suppresses basal immunity, and increases bacterial spot disease in pepper plants.
Subcellular localization and cellular functions of CaLRR1–CaPR10/CaPR4b/CaHIR1 complexes
Cellular trafficking of pepper CaLRR1 and its interacting partner proteins is crucial for fine-tuned regulation of plant cell death and immunity to Xcv infection. CaLRR1 is produced in the cytoplasm, located in the cytoplasm and plasma membrane, and secreted into the apoplastic space (Jung and Hwang 2007; Choi et al. 2011, 2012; Hwang et al. 2014). Different subcellular locations of CaLRR1 play important roles in host cell death and immunity. Small LRR proteins are generally located in the plant plasma membrane, and LRR domains may be exposed to the extracellular space, which contains active components capable of regulating cell–cell interactions during development and in response to biotic or abiotic stresses (Steinmayer et al. 1994; Hipskind et al. 1996; Tornero et al. 1996).
The subcellular localization sites of the CaLRR1–CaPR10 complex are determined to investigate whether the cellular trafficking of the LRR and PR protein complexes is essential for the cell death-mediated defense signaling. CaLRR1 and CaPR10 are located in the cytoplasm and bind with each other (Choi et al. 2012). The CaLRR1–CaPR10 complex translocates to the plasma membrane and is secreted into the extracellular space. Cytoplasmic localization of the CaLRR1–CaPR10 complex is required for induction of the hypersensitive cell death response (Choi et al. 2012). Fusion of a simian vacuolating virus 40 nuclear localization signal (NLS) sequence (PKKKRKV) with CaLRR1 and CaPR10 enables these proteins to localize in the nucleus (Hodel et al. 2001). Confocal microscopy images show that NLS fusion targets NLS-CaLRR1-GFP or NLS-CaPR10-GFP to the nuclei (Fig. 2a). Nuclear or nucleocytoplasmic co-expression of NLS or nls-fused CaLRR1 and CaPR10 does not trigger the cell death response in N. benthamiana leaves. By contrast, co-expression of nls-CaLRR1 and nls-CaPR10 3 days after agroinfiltration induces hypersensitive cell death response (Fig. 2b). Agrobacterium-mediated transient co-expression of CaLRR1 and CaPR10 enhances CaPR10-triggered hypersensitive cell death, similar to that triggered by Bax or avrPto/Pto expression in pepper and N. benthamiana leaves (Choi et al. 2012). Their co-expression results in high levels of electrolyte leakage and callose deposition in the pepper leaves. Mammalian Bax triggers cell death in plants (Lacomme and Santa Cruz 1999), and physical interaction of P. syringae pv. tomato AvrPto and tomato Pto kinase triggers HR-induced disease resistance (Tang et al. 1996). CaLRR1 promotes the ribonuclease activity and phosphorylation of CaPR10, which leads to enhanced cell death signaling (Choi et al. 2012).
CaPR4b has a putative signal peptide (SP) (24 amino acids) followed by the CBD at the N-terminus (Hwang et al. 2014). CaPR4b lacking the SP (CaPR4bΔSP) is present throughout the cell except in the endoplasmic reticulum (ER). Thus, CaPR4b SP is responsible for the ER localization and secretion of CaPR4b. CaPR4b is synthesized in the ER, interacts with CaLRR1 in the plasma membrane, and is secreted into the extracellular space through the plasma membrane (Hwang et al. 2014). Secretion of CaPR4b into the apoplastic region is a pivotal cellular event to trigger rapid cell death in pepper leaf tissues. However, formation of the CaLRR1–CaPR4b complex disturbs the secretion of CaPR4b into the apoplastic space and inhibits the CaPR4b-triggered cell death response. Similar to the antagonistic activity of CaLRR1 against CaPR4b in pepper, transient co-expression of CaLRR1 with CaPR4b significantly suppresses the induction of cell death by CaPR4b expression in N. benthamiana leaves, although transient expression of CaLRR1 alone does not trigger cell death in the leaves. There is convincing evidence that LRR proteins inhibit elicitin-induced (Jacques et al. 2006) and CaHIR1-triggered (Jung and Hwang 2007; Choi et al. 2011) cell death in plants. CaLRR1 expression may block the signaling pathways involved in the CaPR4b-triggered cell death response in plants.
CaLRR1 and CaHIR1 localize to the extracellular matrix and plasma membrane, respectively (Choi et al. 2011). CaLRR1 has a putative SP at the N-terminus, and CaHIR1 has a transmembrane domain at the N-terminus. CaLRR1 is localized in the extracellular matrix of pepper leaf tissues. CaHIR1 remains primarily in the microsomal fraction, indicating a membrane-associated subcellular localization. CaLRR1 and CaHIR1 are localized in small patches at the plasma membrane, which is characteristic of many membrane microdomain proteins (Solis et al. 2007). Mature CaLRR1 protein is secreted to the extracellular matrix and specifically binds to the plasma membrane-localized CaHIR1 to form a heterodimer complex in planta. CaLRR1 physically interacts with CaHIR1 in planta and suppresses CaHIR1-triggered cell death response (Choi et al. 2011). Co-expression of CaHIR1 with CaLRR1 greatly suppresses cell death in the pepper tissue. Electrolyte leakage and callose deposition are higher in CaHIR1-expressing pepper leaf tissues than in CaLRR1/CaHIR1-co-expressing tissues (Choi et al. 2011). CaLRR1 and CaHIR1 positively and negatively regulate SA induction in pepper, respectively (Choi et al. 2011). SA in plants regulates disease resistance mechanisms, including host cell death and defense gene expression (Vlot et al. 2009). CaHIR1 overexpression in Arabidopsis induces the spontaneous cell death phenotype, together with increased K+ efflux and SA pathway-dependent PR gene induction (Jung and Hwang 2007). Co-overexpression of both CaLRR1 and CaHIR1 in transgenic Arabidopsis leaves compromises CaHIR1-mediated PR gene expression and cell death phenotype (Choi et al. 2011). Rice OsLRR1 interacts with OsHIR1, which is localized at the plasma membrane (Zhou et al. 2009). OsHIR1 triggers hypersensitive cell death, and its localization to the plasma membrane is enhanced by OsLRR1 (Zhou et al. 2010), which suggests that OsLRR1 acts as a positive regulator for OsHIR1 function.
Regulation of plant cell death and defense responses by the CaLRR1–CaPR10/CaPR4b/CaHIR1 complex
Among the pepper defense response genes, CaLRR1, CaPR10, CaPR4b, and CaHIR1 are strongly up-regulated in pepper leaf tissues with similar temporal kinetics. CaLRR1 physically interacts with CaPR10 (Choi et al. 2012), CaPR4b (Hwang et al. 2014), and CaHIR1 (Jung and Hwang 2007) to tightly modulate cell death and immunity in pepper plants (Fig. 3). Xcv effector AvrBsT triggers HR cell death in pepper and N. benthamiana leaves (Orth et al. 2000; Escolar et al. 2001; Kim et al. 2010; Han and Hwang 2017). CaLRR1 alone does not function as a regulator of cell death and disease resistance, but coordinates defense responses with its interacting partner proteins CaPR10, CaPR4b, and CaHIR1 in the different subcellular locations (Fig. 3). CaLRR1 is produced in the cytoplasm and trafficked to the extracellular matrix. It binds to CaPR10 in the cytoplasm and CaPR4b and CaHIR1 at the plasma membrane (Fig. 3). CaLRR1 may possess a dual function in the regulation of cell death responses. CaLRR1 positively regulates CaPR10-triggered hypersensitive cell death in pepper and N. benthamiana leaves (Choi et al. 2012). However, CaLRR1 negatively regulates not only CaPR4b-triggered hypersensitive cell death (Hwang et al. 2014), but also disease-associated cell death response in pepper leaves via interaction with CaHIR1 (Jung and Hwang 2007; Choi et al. 2011).
The CaLRR1–CaPR10 complex is formed in the cytoplasm. CaLRR1 expression enhances CaPR10 phosphorylation and RNase activity, which may be required for HR cell death (Choi et al. 2012). The CaLRR1–CaPR10 complex is secreted into the apoplastic space of pepper cells to synergistically accelerate CaPR10-triggered cell death (Choi et al. 2012). The CaLRR1–CaPR10 complex may mediate the synergistic activation of cell death and defense responses. During avirulent Xcv infection, CaPR10 and the positive regulator CaLRR1 trigger early cell death and defense responses, including callose accumulation, SA and ROS burst, and PR- or defense-related gene expression (Fig. 3). These eventually lead to the promotion of CaPR10-triggered HR cell death response. CaPR4b is produced in the endoplasmic reticulum (ER) and is translocated into the apoplast via the plasma membrane (Hwang et al. 2014). CaPR4b has strong antifungal activity against fungal pathogens. Plant PR4 proteins such as wheatwin1 (Bertini et al. 2009) and OsPR4b (Zhu et al. 2006) have in vitro antifungal activity against plant pathogenic fungi. CaLRR1 also binds both CaPR4b and CaHIR1 at the plasma membrane and suppresses CaPR4b- or CaHIR1-triggered pepper cell death from the apoplastic space (Fig. 3; Jung and Hwang 2007; Choi et al. 2011; Hwang et al. 2014). When free CaLRR1 translocates into the extracellular matrix without CaPR10, it may interact with CaPR4b or CaHIR1 at the plasma membrane. The CaLRR1–CaPR4b interaction suppresses CaPR4b-triggered HR-like cell death in plants. Silencing of CaLRR1 together with CaPR4b reduces cell death in pepper leaves. Transient overexpression of CaHIR1 induces cell death in pepper leaves in the absence of pathogen attack; however, co-expression of CaLRR1 with CaHIR1 mitigates CaHIR1-triggered cell death. Interestingly, CaLRR1 overexpression suppresses pepper cell death caused by a mock inoculation. CaLRR1 may have other host partners and increase cell death in response to mechanical wounding or physiological imbalance.
Concluding remarks
Protein–protein complexes mediate many of the host molecular cell death and immune (defense) responses that occur at the transcriptional and translational level (Rebsamen et al. 2013; Choi and Hwang 2015). Recent technological advances can be applied for better understanding of the ability of plant cells to mount the appropriate cell death and immune responses. An array of differential molecular and biochemical events is triggered in pepper plants during X. campestris pv. vesicatoria (Xcv) infection (Choi and Hwang 2015). The HR cell death response in pepper leaf tissues challenged with the avirulent Xcv strain Bv5-4a carrying AvtBsT is characteristic of the incompatible Xcv-pepper interaction (Kim et al. 2010). A number of cell death- and pathogenesis-related (PR) genes are positively regulated in pepper during incompatible Xcv interactions (Choi and Hwang 2015). The Xcv-inducible pepper gene CaLRR1 encoding the small LRR-containing extracellular protein is involved in plant cell death and immunity signaling (Jung et al. 2004; Jung and Hwang 2007). CaLRR1 expression is strongly up-regulated in pepper during Xcv infection. However, CaLRR1 expression is not inducible by the defense hormones SA, ET, and JA, or by abiotic stresses such as drought and cold stress. The pepper pathogenesis-related proteins CaPR10 (Choi et al. 2012) and CaPR4a (Hwang et al. 2014) and the pepper hypersensitive-induced reaction protein CaHIR1 (Jung and Hwang 2007; Choi et al. 2011) (Table 1) physically interact with CaLRR1 to regulate plant cell death and immune (defense) responses; these proteins have been identified using a yeast two-hybrid screen (Fields and Song 1989), BiFC (Walter et al. 2004), and Co-IP assays (Choi et al. 2012). These CaLRR1–pepper interactor proteins have been functionally characterized in plant cells using Agrobacterium-mediated transient expression, VIGS (Liu et al. 2002), and transgenic overexpression techniques.
Pathogen-induced plant cell death is intimately linked to disease and plant immunity (Greenberg and Yao 2004; Choi et al. 2011). Cell death and defense response genes, such as CaPR10 (Choi et al. 2012), CaPR4b (Hwang et al. 2014), and CaHIR1 (Jung and Hwang 2007), contribute positively to the regulation of SA- and ROS-mediated defense signaling, ultimately leading to enhanced HR cell death and disease resistance. Avirulent Xcv infection induces CaPR10 expression associated with the HR cell death response (Choi et al. 2012). Transient CaPR10 expression triggers HR cell death in pepper and N. benthamiana leaves, which is promoted by CaLRR1 co-expression as a positive regulator. The cytoplasmic CaLRR1–CaPR10 complex is involved in cell death and defense signaling in plants (Choi et al. 2012). By contrast, CaLRR1 interacts with CaPR4b to suppress cell death and defense responses (Hwang et al. 2014). CaPR4b positively regulates plant cell death and defense responses. Purified CaPR4b protein inhibits spore germination and mycelial growth of plant fungal pathogens, including A. brassicicola, B. cinerea, C. orbiculare, and F. oxysporum f.sp. matthioli. CaLRR1 also functions as a negative regulator of CaHIR1-triggered cell death response in plants (Jung and Hwang 2007). CaLRR1 and CaHIR1 regulate plant cell death associated with immunity and disease (Choi et al. 2011). Notably, CaHIR1 interacts with Xcv Fha1 to induce disease-associated cell death and suppress PR gene expression in plants (Choi et al. 2013).
Ectopic expression of CaLRR1 and its interactor protein genes in transgenic plants paves the way to mine valuable genetic resources for disease-resistant crop breeding. CaLRR1 overexpression does not confer any resistance to plant pathogens (Jung and Hwang 2007). However, overexpression of CaPR10, CaPR4b, and CaHIR1 in transgenic Arabidopsis plants confers enhanced resistance against hemibiotrophic bacterial and biotrophic oomycete infection. These CaLRR1 interactor protein genes are available for molecular breeding of disease resistance of economically important crops. Resistance of transgenic Arabidopsis plants to H. arabidopsidis is synergistically enhanced by constitutive co-expression of CaPR10 with CaLRR1 (Choi et al. 2012). Enhanced resistance of transgenic Arabidopsis expressing CaHIR1 to P. syringae pv. tomato and H. arabidopsidis infection is accompanied by the strong expression of PR genes, the accumulation of both SA and H2O2, and K+ efflux (Jung and Hwang 2007). The CaLRR1–CaHIR1 complex suppresses CaHIR1-triggered cell death and PR gene expression in Arabidopsis and tobacco plants that overexpress both CaHIR1 and CaLRR1 (Choi et al. 2011). By contrast, transgenic Arabidopsis expressing CaHIR1 is not only susceptible to the necrotrophic fungal pathogen B. cinerea, but is also sensitive to high salinity and drought (Jung et al. 2008). Consequently, plant HIR proteins may be valuable candidates for improving resistance to biotrophic and hemibiotrophic pathogens in crops.
Author contribution statement
BKH designed the outline of the article. JKH, ISH, and BKH wrote the manuscript. JKH composed the table and figures. BKH did the revisions of the manuscript. All authors read and approved the manuscript.
Abbreviations
- ET:
-
Ethylene
- HIR:
-
Hypersensitive-induced reaction
- JA:
-
Jasmonic acid
- LRR:
-
Leucine-rich repeat
- PR:
-
Pathogenesis related
- SA:
-
Salicylic acid
- SP:
-
Signal peptide
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Acknowledgements
This work was carried out with support from the Cooperative Research Program for Agriculture Science and Technology (Project No. PJ00802701), the Rural Development Administration, and the Advanced Production Technology Development Program (Project No. 115051-2), Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, Forestry and Fisheries (IPET), Republic of Korea.
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Hong, J.K., Hwang, I.S. & Hwang, B.K. Functional roles of the pepper leucine-rich repeat protein and its interactions with pathogenesis-related and hypersensitive-induced proteins in plant cell death and immunity. Planta 246, 351–364 (2017). https://doi.org/10.1007/s00425-017-2709-5
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DOI: https://doi.org/10.1007/s00425-017-2709-5