Abstract
The exploitation of plant volatile organic compounds as biofumigants to control postharvest decaying of agro-products has received considerable research attention. Our previous study reported that 1-nonanol, the main constituent of cereal volatiles, can inhibit Aspergillus flavus growth and has the potential as a biofumigant to control the fungal spoilage of cereal grains. However, the antifungal mechanism of 1-nonanol against A. flavus is still unclear at the molecular level. In this study, the minimum inhibitory concentration and minimum fungicidal concentration of 1-nonanol against A. flavus spores were 2 and 4 μL/mL, respectively. Scanning electron microscopy revealed that the 1-nonanol can distort the morphology of A. flavus spore. Annexin V-FITC/PI double staining showed that 1-nonanol induced phosphatidylserine eversion and increased membrane permeability of A. flavus spores. Transcriptional profile analysis showed that 1-nonanol treatment mainly affected the expression of genes related to membrane damage, oxidative phosphorylation, blockage of DNA replication, and autophagy in A. flavus spores. Flow cytometry analysis showed that 1-nonanol treatment caused hyperpolarization of mitochondrial membrane potential and accumulation of reactive oxygen species in A. flavus spores. 4′,6-diamidino-2-phenylindole staining showed that treatment with 1-nonanol destroyed the DNA. Biochemical analysis results confirmed that 1-nonanol exerted destructive effects on A. flavus spores by decreasing intracellular adenosine triphosphate content, reducing mitochondrial ATPase activity, accumulating hydrogen peroxide and superoxide anions, and increasing catalase and superoxide dismutase enzyme activities. This study provides new insights into the antifungal mechanisms of 1-nonanol against A. flavus.
Key points
• 1-Nonanol treatment resulted in abnormal morphology of A. flavus spores.
• 1-Nonanol affects the expression of key growth-related genes of A. flavus.
• The apoptosis of A. favus spores were induced after exposed to 1-nonanol.
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Introduction
Aspergillus flavus is a common saprotrophic fungus in mildewed cereal grains and their derived foods (Liang et al. 2015; Wild and Gong 2010). The proliferation of A. flavus can deteriorate the quality and quantity of cereal grains and produce carcinogenic secondary metabolite aflatoxins, posing risks to human and animal health (Rocha et al. 2014). Therefore, there is a need to develop sustainable and effective measures to control A. flavus contamination in postharvest grains.
The application of chemical fungicides is important to control the fungal spoilage of cereal grains during storage. Previously, several antifungal agents, such as propionic acid and its salts, ozone gases, and phosphine, have been used as grain protectants (Formato et al. 2011; Hardin et al. 2010; Hocking and Banks 1991; Rutenberg et al. 2018). Although antifungal agents can inhibit the growth of spoilage fungi on grain, their large-scale application is hindered by residue toxicity, fungicide resistance, and high costs (De Castro et al. 1996; Jian et al. 2013; Lorini et al. 2007). In recent years, the exploration of biofumigants from plant volatile organic compounds has attracted attention due to their natural origin, high potency, and biodegradability (Brilli et al. 2019; De Lucca et al. 2011; Hammerbacher et al. 2019; Hassanzad Azar et al. 2018; Tang et al. 2018; Wang et al. 2019; Xu et al. 2021), showing biotechnological potential for preventing fungal spoilage of agricultural products.
1-Nonanol is one of the main volatile constituents produced from cereal grains and fruits, such as wheat, cherries, and grapes (Bahena-Garrido et al. 2019; Galvão et al. 2011; Hayaloglu and Demir 2016; Mattiolo et al. 2016). 1-Nonanol can inhibit hyphal growth and spore germination in Geotrichum candidum, thereby preventing the development of citrus rot (Suprapta et al. 1997). Furthermore, 1-nonanol can inhibit the growth of Zygosaccharomyces bailii and Saccharomyces cerevisiae by disrupting the functions of integral proteins on the membrane (Kubo and Cespedes 2013). As a food additive approved by the National Health and Family Planning Commission of China (GB2760-2014), 1-nonanol shows potential for controlling the fungal spoilage of postharvest grains (Zhang et al. 2021a). Recently, we found that 1-nonanol could markedly inhibit A. flavus growth in cereal grains. It was primarily speculated that 1-nonanol treatment could cause cell membrane leakage and mitochondrial dysfunction to induce the apoptosis of A. flavus (Zhang et al. 2021a). However, further investigation on the antifungal mechanisms of 1-nonanol against A. flavus is needed.
In this study, to understand the mechanism through which 1-nonanol exerts antifungal effects against A. flavus, (1) the effect of 1-nonanol on the germination and microscopic morphology of A. flavus spores was determined; (2) transcriptomic analyses were performed to reveal changes in gene expression in A. flavus spores exposed to 1-nonanol; (3) the apoptosis-related characteristics of 1-nonanol-treated A. flavus spores, including mitochondrial membrane potential, reactive oxygen species accumulation, and DNA damage, were analyzed; (4) biochemical validation was performed to confirm the physiochemical changes between untreated and 1-nonanol-treated A. flavus spores. This study provides novel insights into the antifungal effects of 1-nonanol against A. flavus.
Materials and methods
Materials and chemicals
A. flavus NRRL3357 was conserved in our laboratory. 1-Nonanol (CAS: 205–583-7, 98%) was purchased from Macklin (Shanghai, China). Annexin V-FITC apoptosis detection, mitochondrial membrane potential (MMP), reactive oxygen species (ROS) assay kits, and 4′,6-diamidino-2-phenylindole (DAPI) were purchased from Beyotime Biotechnology (Shanghai, China). The assay kits of adenosine triphosphate (ATP), catalase (CAT), hydrogen peroxide (H2O2), superoxide dismutase (SOD), and superoxide anion were purchased from Solarbio Science and Technology Co. Ltd. (Beijing, China). An ATPase assay kit was purchased from the Jiancheng Bioengineering Institute (Nanjing, China).
Determination of the spore germination rate
A. flavus was cultivated on potato dextrose agar medium at 28 ± 1 ℃ for 6 days, and spores were washed with sterilized distilled water containing 0.1% Tween-80. Spore suspensions (1 × 107 spores mL−1) were prepared and counted using a hemocytometer, and used for subsequent experiments. The spore germination rate of A. flavus was determined referring to previously reported method (Li et al. 2021; Xu et al. 2020). One milliliter of spore suspension was added to a 2-mL sterile centrifuge tube containing 1 mL of sterile yeast extract medium with supplements (YES, 2% yeast extract, 20% sucrose, and 0.05% magnesium sulfate) (Li et al. 2021), and 1-nonanol was added to generate different concentrations (0, 0.5, 1, 2, 3, and 4 μL/mL). The culture was incubated at 28 ± 1 °C and 200 rpm for 6, 12, and 24 h. The germination rate of A. flavus spores was calculated after microscopic observation of approximately 300 spores. The minimum concentration of 1-nonanol that totally inhibited the germination of A. flavus spores after 24 h of incubation was defined as the minimum inhibitory concentration (MIC). Non-germinated spores were centrifuged (6000 × g) and washed with 0.01 M phosphate-buffered saline (PBS, pH 7.2) and re-incubated in YES for another 24 h to determine the minimum fungicidal concentration (MFC). The inhibition ratio (IR) of germination was calculated as IR (%) = [(G0 − Gt)/G0] × 100, where IR is the inhibition ratio of germination and G0 and Gt is the germination rates of the control and 1-nonanol-treated spores, respectively.
Scanning electron microscopy
A. flavus spores were recovered and washed with 0.01 M PBS (pH 7.2) after treatment with 1-nonanol (0 μ L/mL, MIC, and MFC) for 6 h. Spores were prepared for scanning electron microscopy (SEM) observation according to a previously reported method (Lv et al. 2019). First, spores were fixed with 2.5% glutaraldehyde solution, dehydrated with 30–100% ethanol solution, and resuspended in tert-butyl alcohol. Next, the spores were sequentially treated with an ethanol and isoamyl acetate (V/V = 1/1) mixture and isoamyl acetate. Finally, the spores were coated with gold after a critical drying process. Morphology observation of A. flavus spores was performed with a scanning electron microscope (Hitachi SU8010, Tokyo, Japan).
Analysis of spore apoptosis and cell membrane integrity
1-Nonanol was added to the spore suspensions in YES to obtain a final concentration of 0 μL/mL, MIC, and MFC. Cultures were incubated at 28 °C for 6 h, collected, and washed with 0.01 M PBS (pH 7.2). A. flavus spores were stained with the Annexin V-FITC apoptosis detection kit. The stained spores were observed with a confocal laser scanning microscope (FV3000, Olympus Corporation, Japan), and measured with a BD Accuri C6 Plus flow cytometer (Becton Dickinson, San Jose, CA, USA). Flow cytometry was used to analyze the data for at least 1 × 104 spores in each sample.
Transcriptomic analysis
A. flavus spores were collected after exposure to 0 μL/mL and MIC of 1-nonanol for 6 h. Total RNA was extracted from untreated and 1-nonanol-treated spores using the TRIzol reagent (Magen Biotechnology Co., Ltd., Guangzhou, China). RNA purity and integrity were determined as previously described (Li et al. 2021). Three micrograms of high-quality RNA was used to generate a cDNA library for sequencing using the NEBNext® UltraTM RNA Library Prep Kit for Illumina® (NEB, Ipswich, MA, USA). cDNA fragment purification, PCR, PCR product purification, and library quality evaluation were performed as described by Li et al. (2021). The clustering of index-encoded samples, the sequencing of the library, and the generation of paired-end reads were performed with reference to previous reports (Li et al. 2021). Reference genome and gene model annotation files were downloaded from the genome website (https://fungidb.org/common/downloads/Current_Release/AflavusNRRL3357/gff/data/). We used Hisat2 (2.0.5 version) (Kim et al. 2015) to construct a reference genome index and compared the double-ended clean reads with the reference genome. The mapping read for each sample was assembled using the StringTie v1.3.3b (Pertea et al. 2015). Differential expression analysis of the two groups (two biological replicates per condition) was performed using the DESeq2 R package (1.16.1) (Love et al. 2014). The resulting P-values were adjusted using Benjamini and Hochberg’s method to control the incorrect discovery rate (Benjamini and Hochberg 1995). The identification of differentially expressed genes (DEGs), enrichment analysis of gene ontology (GO), and significant enrichment of differentially expressed genes were carried out as previously reported (Li et al. 2021). The DEG statistical enrichment test in the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway (http://www.genome.jp/kegg) was implemented using the clusterProfiler R package (Yu et al. 2012). Raw RNA-Seq data were uploaded to the NCBI Sequence Read Archive with the accession number PRJNA783782.
Real-time quantitative polymerase chain reaction validation
Total RNA was extracted from the A. flavus spores. First-strand cDNA was synthesized as described in our previous report (Li et al. 2021). Six representative genes were selected for PCR analysis. The primers used are listed in the supplementary material (Supplemental Table S1). The real-time quantitative polymerase chain reaction (qRT-PCR) mixture contained 10 μL 2 × Universal SYBR Green qPCR Supermix (US Everbright Inc., NJ, USA), 0.8 μL of each primer (10 Mμ), 1 μL cDNA, and 7.4 μL ddH2O. The qRT-PCR reaction conditions were 95 °C for 120 s, 40 cycles of 95 °C for 5 s, and 60 °C for 30 s. Calculate relative gene expression using the 2−ΔΔCt method (Livak and Schmittgen 2001).
Determination of the MMP and ROS accumulation
MMP and ROS accumulation in A. flavus spores were determined using a previously reported method (Li et al. 2021). The spores of A. flavus were exposed to 1-nonanol (0 μL/mL, MIC, and MFC), incubated at 28 °C for 6 h. The spores were collected and rinsed with 0.01 M PBS (pH 7.2). A. flavus spores were stained with the MMP kit and ROS assay kit, and flow cytometry was used to detect MMP and ROS accumulation.
Observation of the DNA damage
A. flavus spores were inoculated into the YES medium and exposed to 1-nonanol (0 μL/mL, MIC, and MFC) at 28 °C for 6 h. The spores was collected, and fixed in 70% ethanol (Zhang et al. 2021b). After the fixed spores were stained with 10 gμ/mL DAPI at 28 °C for 10 min, morphological changes in the A. flavus spore nucleus were observed by confocal laser scanning microscopy (CLSM).
Intracellular ATP, H2O2, and superoxide anion content, mitochondrial ATPase, CAT, and SOD activity determination
A. flavus spores were inoculated into YES medium and exposed to 0 μL/mL and MIC of 1-nonanol at 28 °C. After incubation for 6 h, spores were washed with 0.01 M PBS (pH 7.2) and collected. The intracellular ATP content was measured using an ATP content detection kit. The H2O2 content was determined using a hydrogen peroxide assay kit. ATPase assay kits were used to determine mitochondrial ATPase activity. Superoxide anion content was determined using a superoxide anion assay kit. SOD activity was measured using a SOD activity assay kit. The CAT activity was determined using the CAT activity assay kit.
Statistical analysis
The biochemical data were statistically analyzed using SAS 9.2 (SAS Institute, Cary, NC, USA). Statistical significance was set at P < 0.05. All experiments were performed in triplicate.
Results
Effects of 1-nonanol on A. flavus spore germination and morphology
The germination rate of A. flavus spores at 6, 12, and 24 h under different 1-nonanol concentrations was determined (Table 1). The MIC and MFC of 1-nonanol against the germination of A. flavus spores were 2 and 4 μL/mL, respectively. SEM observation revealed that the A. flavus spores without 1-nonanol treatment were normal and intact, whereas the A. flavus spores were wrinkled after MIC treatment or broken after MFC treatment (Fig. 1). This indicates that 1-nonanol treatment is destructive to the cell wall and membrane of A. flavus spores. The Annexin FITC/PI double staining was used to assess 1-nonanol-induced apoptosis and cell membrane changes of A. flavus spores. Annexin V specifically binds to the phosphatidylserine (PS) of the outer membrane of early apoptotic cells (Vermes et al. 1995). With the increase of 1-nonanol concentration, CLSM observed increased red and green fluorescence of A. flavus spores after staining, indicating that 1-nonanol destroyed the membrane integrity of A. flavus spores and induced their apoptosis. Flow cytometry showed that the percentage of stained spores gradually increased from 1.15% (control) to 58.3% and 71.9% in the MIC and MFC samples, respectively (Fig. 2A, B). Furthermore, phosphatidylserine eversion and permeability of cell membrane of spores were enhanced along with the increased concentration of 1-nonanol. This suggested that 1-nonanol could damage the cell membrane integrity of A. flavus spores and cause apoptosis.
Transcriptomic analysis
The DEGs between A. flavus spores exposed to 0 μL/mL and MIC of 1-nonanol were identified using a high-throughput RNA sequencing to reveal the molecular mechanism of 1-nonanol against A. flavus spores. In addition, the distribution of DEGs between the control and 1-nonanol-treated samples was visualized using a volcano plot (Supplemental Fig. S1). A total of 3,311 DEGs, including 1,897 upregulated genes and 1,414 downregulated genes, were identified between the 1-nonanol-treated and control groups. GO enrichment analysis was conducted to annotate the functional categories of DEGs between the control and 1-nonanol-treated A. flavus spores, including biological processes, cellular components, and molecular functions. Top ten most prominent feature entries for each category were determined (Supplemental Fig. S2), which showed that DEGs mainly included the oxidation–reduction process, organic anion transport, lipoprotein metabolic process, transition metal ion binding, oxidoreductase activity, transcription regulator activity, extrinsic component of vacuolar membrane, and Seh1-associated regulatory complex. KEGG enrichment of DEGs showed that DEGs were mainly related to membrane damage, oxidative phosphorylation, autophagy, and blockage of DNA replication (Fig. 3). According to the current analysis, 64 genes were identified as key genes (Table 2).
qRT-PCR determination of six selected genes (AFLA_136310, AFLA_004460, AFLA_106350, AFLA_079910, AFLA_050950, and AFLA_026790) was performed to validate the transcriptomic results (Supplemental Fig. S3). The expression of these six genes was consistent with the transcriptomic results.
Effect of 1-nonanol on the MMP and ROS accumulation of A. flavus spores
Flow cytometry analysis of the changes in the mitochondrial membrane potential of A. flavus was conducted after treatment with 0 μL/mL, MIC, and MFC of 1-nonanol (Fig. 4). In the experiment, Q2 and Q3 represent the proportion of A. flavus spores containing and without MMP, respectively. With an increase in 1-nonanol concentration, the fluorescence signal of the Q2 area increased from 46.2 to 87.0% and 91.0%, while the fluorescence signal of the Q3 area decreased from 39.1 to 12.2% and 8.14%. This indicated that 1-nonanol treatment increased the MMP of A. flavus spores. Therefore, 1-nonanol treatment increased the MMP of A. flavus spores and caused its MMP hyperpolarization. ROS accumulation test results showed that only 13.3% of the control group showed ROS-specific fluorescence, while these values in the 1-nonanol MIC and MFC treatment groups were 57.2% and 68.2%, respectively (Fig. 5).
Effects of 1-nonanol on DNA fragmentation
DAPI staining showed that the DNA fragmentation fluorescence intensity of the 1-nonanol-treated group was markedly enhanced compared to that of the control group in a dose-dependent manner (Fig. 6). These findings indicate that treatment with 1-nonanol damages the DNA of A. flavus spores.
Biochemical validation
The intracellular ATP content and mitochondrial ATPase activity in A. flavus cells treated with 1-nonanol decreased by 47.45% and 52.41%, respectively, relative to the control (Fig. 7A, B). H2O2 content and CAT activity in A. flavus spores treated with 1-nonanol increased by 61.54% and 31.43%, respectively, relative to the control (Fig. 7C, D). Superoxide anion content and SOD activity in cells with 1-nonanol treated were enhanced by 59.56% and 69.60%, respectively, relative to the control (Fig. 7E, F).
Discussion
As a natural plant volatile matter and authorized food additive, 1-nonanol shows potential for use as a bio-preservative for postharvest management (Zhang et al. 2021a). In this study, we investigated the antifungal mechanism of 1-nonanol against A. flavus at the molecular level. 1-Nonanol has a high inhibitory activity against the germination of A. flavus spores. Transcriptional profile analysis showed that 1-nonanol treatment mainly affected the expression of genes related to membrane damage, oxidative phosphorylation, autophagy, and blockage of DNA replication in A. flavus spores. In addition, 1-nonanol treatment could induce apoptosis in A. flavus spores. The physiological and biochemical effects of 1-nonanol against A. flavus spores were validated.
Cell wall and cell membrane integrity
Apoptosis is the process of programed cell death, accompanied by physiological changes, such as abnormal morphology, PS externalization, abnormal MMP, and DNA decomposition (Sharon et al. 2009). 1-Nonanol can damage the cell wall of A. flavus spores. The cell wall is a barrier that protects the fungus from adverse effects (Free 2013). From the SEM results, breakage of the cell wall of spores exposed to 1-nonanol could be observed. Destruction of the cell wall structure causes cell membrane rupture and cell lysis, affecting the survival of fungal cells (Cortés et al. 2019). Chitin is the main component of fungal cell walls and the reduction in its biomass results in a decline in cell viability (Free 2013). In this study, four chitinase-related genes (AFLA_101800, AFLA_031380, AFLA_028280, and AFLA_104680) were upregulated in A. flavus spores after 1-nonanol treatment. Chitinase is an extracellular enzyme complex that degrades chitin. Upregulation of the gene encoding chitinase degrades the chitin present in A. flavus spores and affects the integrity of the cell wall. Interestingly, genes encoding chitin synthase A (AFLA_042780) and chitin synthase B (AFLA_114760) were also upregulated in 1-nonanol-treated A. flavus spores. These DEGs indicate that 1-nonanol can change the properties of A. flavus cell walls while triggering a genetic compensation response (GCR) to cell wall damage. It has been reported that yeast cells upregulate the expression of genes related to cell wall biogenesis to overcome the damage caused by terpenes (Parveen et al. 2004). Although current evidence indicates that 1-nonanol has multiple effects on the A. flavus spore cell wall, since the surface of the conidia is a relatively rigid structure, it is still unclear how 1-nonanol can change the morphology of the conidia.
1-Nonanol treatment also disrupted the cell membrane of A. flavus cells. The results of Annexin V-FITC staining indicated that 1-nonanol treatment could cause PS externalization in the plasma membrane of A. flavus spores, which is typical biochemical marker of fungal cell (Ma et al. 2017). Propidium iodide staining indicated that 1-nonanol treatment increased membrane permeability of A. flavus spores. This supported our previous speculation that 1-nonanol treatment increases the permeability of the cell membrane of A. flavus (Zhang et al. 2021a). Microbial cells respond to environmental pressure by adjusting the ratio of saturated fatty acids to unsaturated fatty acids (Wu et al. 2012). This study found that three genes related to fatty acid metabolism were downregulated after 1-nonanol treatment. Gns1 encodes fatty acid elongase and participates in the biosynthesis of polyunsaturated fatty acids. Two genes, PpoA, AFLA_026790, and AFLA_004460, encoding the fatty acid oxygenase and desaturase, respectively, catalyze the desaturation of oleic acid to linoleic acid. The downregulation of these genes would alter the metabolic pathway of fatty acids in A. flavus cell, eventually affecting the synthesis of cell membrane fatty acids. In Botrytis cinerea cells treated with tea tree oil (TTO) and its two characteristics, genes involved in fatty acid biosynthesis were downregulated, affecting the composition of the cell membranes (Li et al. 2020). Ergosterol is the main component of fungal cell membranes and affects membrane permeability and membrane-bound enzyme activity (Chen et al. 2018). Transcriptomic analysis revealed that genes related to the ergosterol synthesis pathway were differentially expressed after 1-nonanol treatment. However, only the lanosterol synthase (Erg7, AFLA_001030) gene was upregulated and its downstream genes were downregulated (AFLA_051080; Cyp51A, AFLA_036130; AFLA_121580; Erg4, AFLA_138060; AFLA_021770; Erg1, AFLA_061500; and AFLA_111350). Erg4 catalyzes the last step in the ergosterol synthesis pathway. We speculate that 1-nonanol treatment reduced the biosynthesis of ergosterol in A. flavus spores and changed membrane fluidity. It was previously reported that TTO treatment reduced ergosterol in B. cinerea and Penicillium expansum, increased membrane permeability, and caused mycelial death (Li et al. 2017a).
Mitochondrial dysfunction and energy supply
Our previous study speculated that 1-nonanol treatment might cause mitochondrial dysfunction of A. flavus cells. In this study, we provided more evidence to confirm that A. flavus mitochondria is a potential antifungal target of 1-nonanol. Increased intracellular ROS levels and MMP hyperpolarization supported mitochondrial dysfunction in 1-nonanol-treated A. flavus spores (Zorova et al. 2018), which were also found in Rhizopus stolonifer treated with thymol and salicylic acid (Kong et al. 2019). 1-Nonanol treatment impairs the mitochondrial respiratory chain of A. flavus spores. The inner membrane of eukaryotic mitochondria is the main site of oxidative phosphorylation, which can form a proton gradient, and finally convert ADP to ATP through the respiratory chain (Chaban et al. 2014; Mitchell 1961). In this study, 9 DEGs related to oxidative phosphorylation were found in the 1-nonanol treatment and control groups. Seven genes encoding NADH dehydrogenase subunits (AFLA_m0030, AFLA_m0460, AFLA_m0410, AFLA_m0060, AFLA_m0450, AFLA_m0130, and AFLA_m0440) were upregulated in 1-nonanol-treated cells. NADH dehydrogenase subunits were involved in the composition of mitochondrial complex I (Bridges et al. 2010). Genes encoding cytochrome b (AFLA_m0010) were upregulated in A. flavus spores exposed to 1-nonanol. Cytochrome b was involved in the composition of mitochondrial complex III (Calderon et al. 2013). However, genes encoding the cytochrome c oxidase assembly protein (Cox11, AFLA_135090) were downregulated. Cytochrome c oxidase catalyzes the end step of the electron transport chain of cellular respiration (Li et al. 2006). We speculate that 1-nonanol treatment affects the end of the electron transport chain and stimulate the occurrence of GCR to maintain the mitochondrial electron transport chain. The differential expression of these genes may reduce ATP production. Furthermore, the verification experiment showed that the cell ATP content decreased, which confirmed our speculation. Therefore, 1-nonanol treatment could disrupt the respiratory chain of A. flavus spore mitochondria, resulting in an imbalance energy supply. A similar mechanism of respiratory chain damage was also observed in Penicillium italicum exposed to flavonoids from Sedum aizoon L. (Luo et al. 2020).
1-Nonanol treatment reduced the mitochondrial ATPase activity of A. flavus spores and interfered with the tricarboxylic acid cycle (TCA), impairing the mitochondrial energy supply. ATPase is a globular protein that maintains cell metabolism and viability and releases intracellular energy (Hu et al. 2021). In the current study, two genes encoding the Na/K ATPase α 1 subunit and ATP-dependent Clp protease (AFLA_073840 and AFLA_081310) were downregulated in the 1-nonanol-treated group. The downregulation of these two genes at the molecular level verified our previous study that 1-nonanol treatment reduced the mitochondrial ATPase activity of A. flavus (Zhang et al. 2021a). Essential oils from Perilla frutescens and oregano also caused reduction of ATPase activity in A. flavus and Staphylococcus aureus (Cui et al. 2019; Hu et al. 2021). In addition, verification experiments showed that 1-nonanol treatment reduced mitochondrial ATPase activity, suggesting that the energy supply of mitochondria was disrupted. Mitochondria produce ATP through TCA cycle and oxidative phosphorylation to provide energy for cells (Vakifahmetoglu-Norberg et al. 2017). Furthermore, four DEGs related to the TCA cycle were enriched, in which three genes encoding pyruvate dehydrogenase and citrate synthase (AFLA_035290; Cit1, AFLA_007020; and AFLA_007020, respectively) were upregulated, and the gene encoding isocitrate dehydrogenase (Idp1, AFLA_086400) were downregulated. Pyruvate dehydrogenase catalyzes the production of acetyl-CoA from pyruvate produced by glycolysis. Citrate synthase is the first enzyme in the TCA cycle, performing the irreversible condensation of acetyl-CoA and oxaloacetate to form citrate (Ciccarone et al. 2019). Isocitrate dehydrogenase catalyzes the removal of two hydrogens from isocitrate, and one of them is transferred to the carrier NAD in the form of a hydride, which then powers the rotation of ATP synthase (Zheng and Jia 2010). Exposure to 1-nonanol could interfere with the third step of the TCA cycle and stimulate A. flavus spores to upregulate genes related to the production of acetyl-CoA and citric acid to maintain energy supply. These results suggest that 1-nonanol treatment could interfere with the TCA cycle and impair mitochondrial energy supply. It was reported that TTO exposure disrupted the TCA cycle of B. cinerea, resulting in cell death (Xu et al. 2017; Li et al. 2017b; Wang et al. 2021).
Protective antioxidant mechanisms, block of DNA replication, and autophagic pathway
ROS are by-products of oxidative phosphorylation in the mitochondria. Environmental stress would cause the accumulation of intracellular ROS, causing mtDNA damage and lipid peroxidation (Papoutsis et al. 2019). Our previous reported that 1-nonanol-treated would cause the accumulation of H2O2 and superoxide anions in the A. favus hyphae, and cause an oxidative burst. Here, flow cytometry and validation experiments provide more evidence that 1-nonanol treatment can cause ROS accumulation in A. flavus cells. Eukaryotes activate defense mechanisms to protect cells from damage caused by drastic changes in the environment (Li et al. 2011). The degree of cellular oxidative stress is determined by the balance between the production of reactive oxygen species and antioxidant defense capabilities (Cesaratto et al. 2004). In this study, three genes encoding peroxisomes were differentially expressed. Genes encoding catalase (AFLA_096210 and AFLA_034380) and manganese superoxide dismutase (MnSOD, AFLA_033420) were upregulated. Catalase catalyzes H2O2 into water and oxygen, while MnSOD maintains a low steady-state concentration of superoxide anion in the cell (Candas and Li 2014; Ho et al. 2004). Validation experiments showed that treatment with 1-nonanol can increased the activities of catalase and superoxide dismutase. The upregulation of genes related to antioxidant enzyme activity and the increase of enzyme activity suggest that 1-nonanol treatment stimulated the protective antioxidant mechanism of A. flavus spores. Similarly, peptide MAF-1 treatment induced over-expression of C. albicans oxidative stress-related genes CAT1, YBH1, and SOD to protect it from ROS (Wang et al. 2017).
DAPI staining showed that 1-nonanol treatment increased the fragmentation fluorescence intensity of A. flavus spores compared to the control group, indicating that 1-nonanol could damage the nuclei of A. flavus spores. In the current study, we found that 1-nonanol treatment can inhibit the DNA replication of A. flavus spores. The genes encoding DNA ligase and DNA primase subunit (Cdc9, AFLA_045990; and Pri1, AFLA_085970), two key enzymes involved in DNA replication pathways, were downregulated. The cell cycle mutant Cdc9 in S. cerevisiae is defective in DNA ligase and cannot repair damaged DNA caused by methyl methane-sulfonate (Johnston 1979). In addition, three genes encoding the DNA replication licensing factor (Mcm3, AFLA_028600; Mcm4, AFLA_045950; and Mcm5, AFLA_004710, respectively) and the gene encoding the DNA replication factor C (RFC) subunit (Rfc4, AFLA_054950) were downregulated. The Mcm protein family consists of six related proteins (Mcm 2–7), helicases necessary for eukaryotic DNA replication (Forsburg 2004). The RFC is a multiprotein complex of five different polypeptides (RFC 1–5). During DNA synthesis, RFC assembles the proliferation cell nuclear antigen (PCNA) on the leading and lagging strands, and then the PCNA interacts with the DNA polymerases ε and δ, respectively, to initiate progressive DNA synthesis (Wen et al. 2018; Strzalka and Ziemienowicz 2011). Therefore, inhibition of the expression of Mcm3, Mcm4, Mcm5, and Rfc4 interferes with normal DNA replication. The antifungal effect exhibited by 1-nonanol by blocking DNA replication is similar to miconazole analogs (Zhang et al. 2017).
Autophagy plays an important role in the maintenance of normal cell physiology. It maintains homeostasis by digesting dysfunctional organelles and protein aggregates to prevent cellular stress (Denton et al. 2020). The autophagy pathway is activated following exposure to environmental pressures. ROS are signaling molecules in various pathways that regulate cell survival and death and can induce autophagy through several different mechanisms involving Atg4, catalase, and the mitochondrial electron transport chain (Azad et al. 2009). 1-Nonanol treatment upregulated the expression of five genes (Apg12, Atg4, Pdd7p, Vtc1, and Pep4) related to the autophagy regulatory pathway, thus indicating that the autophagy pathway was activated. However, activation of autophagy poses a potential risk. Autophagy may help save dying cells and kill viable cells (Levine and Kroemer 2008). We speculate that when A. flavus spores respond to oxidative stress induced by 1-nonanol, the antioxidant pathway is activated and the level of autophagy increases to help cells maintain their stability. However, excessive defense mechanisms may lead to defensive dysfunction and aggravate the cell damage caused by oxidative stress.
In conclusion, we propose a hypothetical model of the antifungal mechanism of 1-nonanol against A. flavus (Fig. 8). 1-Nonanol blocks cell integrity, oxidative phosphorylation, and mitochondrial function genes. Furthermore, it interferes with the processes of genetic information transmission, such as DNA replication and transcription, inducing antioxidant pathways and autophagy, causing mitochondrial dysfunction, and eventually leading to cell death.
Data availability
The datasets generated during and/or analyzed during the current study are available from the corresponding author on reasonable request.
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This work was supported by the National Natural Science Foundation of China (grant number 31772023), the National Key Research and Development Plan of China (grant number 2019YFC1605303-04), the Scientific and Technological Research Project of Henan Province (grant number 212102110193), the Natural Scientific Research Innovation Foundation of Henan University of Technology (grant number 2020ZKCJ01), the Cultivation Programme for Young Backbone Teachers in Henan University of Technology, and the Scientific Research Foundation of Henan University of Technology (grant number 2018RCJH14).
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Y. L. Q.: experimentation; writing—original draft; investigation. S. B. Z.: supervision; data curation; writing—review and editing; resources. Y. Y. L.: software, visualization. H. C. Z.: software, validation. Y. S. H.: visualization, conceptualization, validation. J. P. C.: methodology, conceptualization.
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Qin, YL., Zhang, SB., Lv, YY. et al. Transcriptomics analyses and biochemical characterization of Aspergillus flavus spores exposed to 1-nonanol. Appl Microbiol Biotechnol 106, 2091–2106 (2022). https://doi.org/10.1007/s00253-022-11830-4
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DOI: https://doi.org/10.1007/s00253-022-11830-4