Skip to main content

Profiling of Reindeer’s Rumen Microbial Communities: Characteristics and Age-Related Analysis

  • Conference paper
  • First Online:
Agriculture Digitalization and Organic Production

Abstract

Reindeer are animals adapted to live in a poor diet and low temperatures in the Arctic regions. The aim of this research was to study the biodiversity of ruminal microorganisms of Rangifer tarandus inhabiting the Murmansk region, Russian Federation. Samples of the ruminal contents from 11 individuals, incl. young (YA, n = 3), mature (MA, n = 4) and old (OA, n = 4) animals were used for the research. The ruminal bacterial community of reindeer was studied using the T-RFLP (Terminal restriction fragment length polymorphism) method. A significant number of DNA sequences in the rumen of Rangifer tarandus were classified as uncultured bacteria (up to 69.88%), the largest share of which was found in groups YA and OA. The representation of several taxa had age differences: in individuals of the MA group, the share of Lachnospiraceae, Eubacteriaceae, Thermoanaerobacteriaceae, Ruminococcaceae increased and in the AO group the share of Clostridiaceae increased. It was important to note in the rumen of reindeer the presence of various diseases pathogens and their association with a certain age of animals: Campylobacteraceae was noted in the YA group; Enterobacteriaceae, Pseudomonadaceae, and Pasteurellaceae in the MA group; Staphylococcus sp., Tenericutes, Fusobacteria, Actinobacteria in the OA group. In general, according to the alpha-diversity index values of ruminal microorganisms (taxonomic units, Shannon's index), a tendency toward a decrease in biodiversity and an increase in its homogeneity was revealed increasing age in reindeer.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 149.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 199.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 279.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Aagnes, T.H., Sørmo, W., Mathiesen, S.D.: Ruminal microbial digestion in free living, in captive lichen-fed and in starved reindeer (Rangifer tarandus tarandus) in winter. Appl. Env. Microb. 61(2), 583–591 (1995). https://doi.org/10.1128/AEM.61.2.583-591.1995

    Article  Google Scholar 

  2. Johnson, K.A., Johnson, D.E.: Methane emissions from cattle. J. Anim. Sci. 73, 2483–2492 (1995). https://doi.org/10.2527/1995.7382483x

    Article  Google Scholar 

  3. Tadepalli, S., Narayanan, S.K., Stewart, G.C., Chengappa, M.M., Nagaraja, T.G.: Fusobacterium necrophorum: a ruminal bacterium that invades liver to cause abscesses in cattle. Anaerobe 15(1–2), 36–43 (2009). https://doi.org/10.1016/j.anaerobe.2008.05.005

    Article  Google Scholar 

  4. Church, D.C.: Ruminant Animal: Digestive Phisiology and Nutrition. Prentice Hall, New Jersey (1993)

    Google Scholar 

  5. Hungate, R.E.: The Rumen and its Microbes. Academic Press, NY (1966). https://doi.org/10.1002/jobm.19690090617

  6. De la Fuente, G., Belanche, A., Girwood, S.E., Pinloche, E., Wilkinson, T., Newbold, C.J.: Pros and cons of ion-torrent next generation sequencing versus terminal restriction fragment length polymorphism T-RFLP for studying the rumen bacterial community. PLoS ONE 9(7), e101435 (2014). https://doi.org/10.1371/journal.pone.0101435

    Article  Google Scholar 

  7. Roach, J.A.G., Musser, S.M., Morehouse, K., Woo, J.Y.J.: Determination of usnic acid in lichen toxic to elk by liquid chromatography with ultraviolet and tandem mass spectrometry determination. J. Agric. Food Chem. 54, 2484–2490 (2006). https://doi.org/10.1021/jf052767m

    Article  Google Scholar 

  8. Eckard, R.J., Grainger, C., de Klein, C.A.M.: Options for the abatement of methane and nitrous oxide from ruminant production: a review. Livest. Sci. 130, 47–56 (2010)

    Article  Google Scholar 

  9. Martin, C., Morgavi, D.P., Doreau, M.: Methane mitigation in ruminants: from microbe to the farm scale. Anim. Int. J. Anim. Biosci. 4(3), 351–365 (2010) https://doi.org/10.1017/S1751731109990620

  10. Layshev, K.A., Ilina, L.A., Yildirim, E.A., Philippova, V.A., Dunyashev, T.P., Dubrovin, A.V., Sobolev, D.V., Novikova, N.I., Laptev, G.Yu., Yuzhakov, A.A., Romanenko, T.M., Vylko, Yu.P.: The rumen microbiota of reindeer (Rangifer tarandus) with clinical manifestations of necrobacteriosis. Sel’skokhozyaistvennaya Biologiya [Agricultural Biology] 54(4), 744–753 (2019). https://doi.org/10.15389/agrobiology.2019.4.744eng

  11. Li, Y., Hu, X., Yang, S., Zhou, J., Qi, L., Sun, X., Fan, M., Xu, S., Cha, M., Zhang, M., Lin, S., Liu, S., Hu, D.: Comparison between the fecal bacterial microbiota of healthy and diarrheic captive musk deer. Front. Microbiol. 9, 300 (2018). https://doi.org/10.3389/fmicb.2018.00300

    Article  Google Scholar 

  12. Nocek, J.E.: Bovine acidosis: implications on laminitis. J. Dairy Sci. 80, 1005–1028 (1997). https://doi.org/10.3168/jds.S0022-0302(97)76026-0

    Article  Google Scholar 

  13. Sambrook, J.: Molecular Cloning: a Laboratory Manual. Cold Spring Harbor Laboratory Press, New York (2001). https://doi.org/10.1021/jf052767m

  14. Mukhachev, A.D., Layshev, K.A.: The World of Reindeer. Norilsk, Russia (2007)

    Google Scholar 

  15. Wang, L., Xu, Q., Kong, F., Yang, Y., Wu, D., Mishra, S., Li, Y.: Exploring the goat rumen microbiome from seven days to two years. PLoS ONE 11(5), e0154354 (2016). https://doi.org/10.1371/journal.pone.0154354

    Article  Google Scholar 

  16. Zielińska, S., Kidawa, D., Stempniewicz, L., Łoś, M., Łoś, J.M.: New insights into the microbiota of the Svalbard Reindeer Rangifer tarandus platyrhynchus. Front. Microbiol. 7, 170 (2016). https://doi.org/10.3389/fmicb.2016.00170

    Article  Google Scholar 

  17. Weimer, P.J.: Redundancy, resilience, and host specificity of the ruminal microbiota: implications for engineering improved ruminal fermentations. Front. Microbiol. 6, 1–16 (2015). https://doi.org/10.3389/fmicb.2015.00296

    Article  Google Scholar 

  18. Ishaq, S.L., Wright, A.-D.G.: Insight into the bacterial gut microbiome of the North American moose (Alces alces). BMC Microbiol. 12, 212 (2012). https://doi.org/10.1186/1471-2180-12-212

    Article  Google Scholar 

  19. Samsudin, A.A., Evans, P.N., Wright, A.G., Al Jassim, R.: Molecular diversity of the foregut bacteria community in the dromedary camel (Camelus dromedarius). Environ. Microbiol. 13, 3024–3035 (2011). https://doi.org/10.1111/j.1462-2920.2011.02579.x

    Article  Google Scholar 

  20. Sundset, M.A., Kohn, A., Mathiesen, S.D., Præsteng, K.E.: Eubacterium rangiferina, a novel usnic acid-resistant bacterium from the reindeer rumen. Naturwissenschaften 95, 741–749 (2008). https://doi.org/10.1007/s00114-008-0381-0

    Article  Google Scholar 

  21. Hansen, K.K., Sundset, M.A., Folkow, L.P., Nilsen, M., Mathiesen, S.D.: Methane emissions are lower from reindeer fed lichens compared to a concentrate feed. Polar Res. 37, 1 (2018). https://doi.org/10.1080/17518369.2018.1505396

    Article  Google Scholar 

  22. Blaxter, K.L., Clapperton, J.L.: Prediction of the amount of methane produced by ruminants. Br. J. Nutr. 19, 511–522 (1965). https://doi.org/10.1079/bjn19650046

    Article  Google Scholar 

  23. Henderson, G., Cox, F., Ganesh, S., Jonker, A., Young, W., Janssen, P.H.: Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range. Sci. Rep. 5, 14567 (2015). https://doi.org/10.1038/srep14567

    Article  Google Scholar 

  24. Murtagh, F., Legendre, P.: Ward’s hierarchical agglomerative clustering method: which algo-rithms implement ward’s criterion? J. Classif. 31(3), 274–295 (2014). https://doi.org/10.1007/S00357-014-9161-Z

Download references

Acknowledgements

Supported financially by Russian Science Foundation for project No. 17-76-20026 «Rumen microbiocenosis in Rangifer tarandus of the Russian Arctic as a fundamentals for promising animal biotechnologies».

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Larisa Ilina .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2022 The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd.

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Ilina, L., Filippova, V., Yildirim, E., Laptev, G., Laishev, K. (2022). Profiling of Reindeer’s Rumen Microbial Communities: Characteristics and Age-Related Analysis. In: Ronzhin, A., Berns, K., Kostyaev, A. (eds) Agriculture Digitalization and Organic Production . Smart Innovation, Systems and Technologies, vol 245. Springer, Singapore. https://doi.org/10.1007/978-981-16-3349-2_6

Download citation

Publish with us

Policies and ethics