Abstract
Timely and accurate diagnosis of viral infections has an important role in public healthcare management. Accordingly, there is a growing need to update on emerging diagnostics, which would be helpful in identifying newer uncharacterized viruses. With increasing viral pandemics in the past century, development of novel antiviral strategies also poses an important challenge to the current healthcare system. Herein, we describe several recent advancements on rapid viral detection and antiviral methods. Among the various diagnostic approaches, CRISPR-Cas system-based detection of viral nucleic acid on a paper-based lateral flow assay, fluid-phase immunoassay technology, and luciferase immunoprecipitation system followed by paramagnetic technology (LIPSTICKS) appear promising. Recently developed multiplex microsphere immunoassay (MIA), sandwich-type electrochemiluminescence, nanoparticle-based immunodetection, solid-phase immunoelectron microscopy (SPIEM), loop-mediated isothermal amplification (LAMP), biosensors, aptamers, and microarray technique also open a new era in viral diagnostics. Apart from these, transmission electron microscope study and MALDI (matrix-assisted laser desorption/ionization) methods are also some sophisticated technologies for detection of uncharacterized viruses. The review will further highlight on the emerging antiviral strategies. MHC class I and class II associated peptide proteomics (MAPPs) is a powerful tool for directly profiling neoantigen. The sequencing data of neoantigen can help in the synthesis of effective peptide vaccines that can stimulate humoral and cell-mediated immune responses. Type I IFN-based antiviral therapy, followed by the usage of stimulator of IFN gene (STINGs) as vaccine adjuvants to boost up vaccine efficacy against viral infection, also appears to be a novel method. Taken together, this review will highlight on our current understanding of these high-throughput viral detection techniques as well as novel antiviral approaches.
Similar content being viewed by others
References
Acosta PL, Byrne AB, Hijano DR et al (2020) Human type I interferon antiviral effects in respiratory and reemerging viral infections. J Immunol Res 2020:1372494
Alison J, Kalanthe H, Amanda J et al (2013) Multiplex microsphere immunoassays for the detection of IgM and IgG to Arboviral diseases. PLoS One 8(9):e75670
Babamiri B, Hallaj R, Salimi A (2018) Ultrasensitive electrochemiluminescence immunosensor for determination of hepatitis B virus surface antigen using CdTe@ CdS-PAMAM dendrimer as luminescent labels and Fe3O4 nanoparticles as magnetic beads. Sensors Actuators B Chem 254:551–560
Banerjee R, Jaiswal A (2018) Recent advances in nanoparticle-based lateral flow immunoassay as a point-of-care diagnostic tool for infectious agents and diseases. Analyst 143(9):1970–1996
Burbelo PD, Goldman R, Mattson TL (2005) A simplified immunoprecipitation method for quantitatively measuring antibody responses in clinical sera samples by using mammalian-produced Renilla luciferase-antigen fusion proteins. BMC Biotechnol 5:22
Burbelo PD, Ching KH, Klimavicz CM et al (2009) Antibody profiling by Luciferase Immunoprecipitation Systems (LIPS). J Vis Exp 32:1549
Burbelo PD, Gunti S, Keller JM et al (2017) Ultrarapid measurement of diagnostic antibodies by magnetic capture of immune complexes. Sci Rep 7(1):3818
Buss SN, Leber A, Chapin K et al (2015) Multicenter evaluation of the Bio Fire Film Array gastrointestinal panel for etiologic diagnosis of infectious gastroenteritis. J Clin Microbiol 53:915–925
Connelly JT, Kondapalli S, Skoupi M et al (2012) Micro-total analysis system for virus detection: microfluidic preconcentration coupled to liposome-based detection. Anal Bioanal Chem 402:315–323
Draz MS, Shafiee H (2018) Applications of gold nanoparticles in virus detection. Theranostics 8(7):1985
Driskell JD, Zhu Y, Kirkwood CD et al (2010) Rapid and sensitive detection of rotavirus molecular signatures using surface enhanced Raman spectroscopy. PLoS One 5:e10222
Escudero-Abarca BI, Suh SH, Moore MD et al (2014) Selection, characterization and application of nucleic acid aptamers for the capture and detection of human norovirus strains. PLoS One 9:e106805
Gencer D, Bayramoglu Z, Nalcacioglu R et al (2018) Characterisation of three Alphabaculovirus isolates from the gypsy moth, Lymantria dispar dispar (Lepidoptera: Erebidae), in Turkey. Biocontr Sci Technol 28:107–121
Gentile M, Gelderblom HR (2014) Electron microscopy in rapid viral diagnosis: an update. New Microbiol 37:403–422
Huger AM (1967) Elektronenmikroskopie bei der Diagnose von Insektenkrankheiten. In: van der Laan FA (ed) Proc. Intern. Colloq. “Insect pathology and microbial control”. North Holland, Amsterdam, pp 29–53
Huger AM (1974) Methoden und Bedeutung der diagnose von Insektenkrankheiten/methods and importance of diagnosis of insect diseases. J Plant Dis Protect 81:372–388
Hwang SG, Ha K, Guk K et al (2018) Rapid and simple detection of Tamiflu-resistant influenza virus: development of oseltamivir derivative-based lateral flow biosensor for point-of-care (POC) diagnostics. Sci Rep 8:12999
Johnson AJ, Noga AJ, Kosoy O et al (2005) Duplex microsphere-based immunoassay for detection of anti-West Nile virus and anti-St. Louis encephalitis virus immunoglobulin m antibodies. Clin Diagn Lab Immunol 12:566–574
Joshi VG, Dighe VD, Thakuria D et al (2013) Multiple antigenic peptide (MAP): a synthetic peptide dendrimer for diagnostic, antiviral and vaccine strategies for emerging and re-emerging viral diseases. Indian J Virol 24(3):312–320
Kieboom CH, Beek SL, Meszaros T et al (2015) Aptasensors for viral diagnostics. Trends Anal Chem 74:58–67
Kiselev D, Matsvay A, Abramov I et al (2020) Current trends in diagnostics of viral infections of unknown etiology. Viruses 12(2):211
Koenig R, Lesemann DE (2001) Plant virus identification. In: Encyclopedia of life sciences. Wiley, Chichester
Leland DS, Ginocchio CC (2007) Role of cell culture for virus detection in the age of technology. Clin Microbiol Rev 20:49–78
Lewis DC, Lightfoot NF, Pether JV (1988) Solid-phase immune electron microscopy with human immunoglobulin M for serotyping of Norwalk-like viruses. J Clin Microbiol 26:938–942
Luo Y, Nartker S, Miller H et al (2010) Surface functionalization of electrospun nanofifibers for detecting E. coli O157: H7 and BVDV cells in a direct-charge transfer biosensor. Biosens Bioelectron 26:1612–1617
Makarova KS, Wolf YI, Alkhnbashi OS et al (2015) An updated evolutionary classification of CRISPR–Cas systems. Nat Rev Microbiol 13(11):722
Malonis RJ, Lai JR, Vergnolle O (2020) Peptide-based vaccines: current progress and future challenges. Chem Rev 120(6):3210–3229
Martínez MA, Soto-Del Río Mde L, Gutiérrez RM et al (2015) DNA microarray for detection of gastrointestinal viruses. J Clin Microbiol 53:136–145
Morinet F, Ferchal F, Colimon R, Perol Y (1984) Comparison of six methods for detecting human rotavirus in stools. Eur J Clin Microbiol Infect Dis 3:136–140
Mourya DT, Yadav PD, Ullas PT et al (2019) Emerging/re-emerging viral diseases & new viruses on the Indian horizon. Indian J Med Res 149(4):447–467
Oem JK, Ferris NP, Lee K-N et al (2009) Simple and rapid lateral-flow assay for the detection of foot-and-mouth disease virus. Clin Vaccine Immunol 16(11):1660–1664
Oka T, Wang Q, Katayama K, Saif LJ (2015) Comprehensive review of human sapoviruses. Clin Microbiol Rev 28:32–53
Park JW, Jin Lee S, Choi EJ, Kim J et al (2014) An ultra-sensitive detection of a whole virus using dual aptamers developed by immobilization-free screening. Biosens Bioelectron 51:324–329
Pineda MF, Chan LLY, Kuhlenschmidt T et al (2009) Rapid specfic and label-free detection of porcine rotavirus using photonic crystal biosensors. IEEE Sensors J 9:470–477
Quesada GD, Merkoçi A (2015) Nanoparticle-based lateral flow biosensors. Biosens Bioelectron 73:47–63
Quiñones B, Lee BG, Martinsky TJ et al (2017) Sensitive genotyping of foodborne-associated human noroviruses and hepatitis A virus using an array-based platform. Sensors 17:2157
Reboud J, Xu G, Garrett A et al (2019) Paper-based microfluidics for DNA diagnostics of malaria in low resource underserved rural communities. Proc Natl Acad Sci 116(11):4834–4484
Rosendahl HS, Van BJ, de Jonge J et al (2014) T cell responses to viral infections – opportunities for Peptide vaccination. Front Immunol 5:171
Sajid M, Kawde AN, Daud M (2015) Designs, formats and applications of lateral flow assay: a literature review. J Saudi Chem 19:689–705
Sher M, Zhuang R, Demirci U et al (2017) Paper-based analytical devices for clinical diagnosis: recent advances in the fabrication techniques and sensing mechanisms. Expert Rev Mol Diagn 17(4):351–366
Song KK, Lee S, Ban C (2012) Aptamers and their biological applications. Sensors 12:612–631
Wang D, Coscoy L, Zylberberg M et al (2002) Microarray-based detection and genotyping of viral pathogens. Proc Natl Acad Sci U S A 99:15687–15692
Wang H, Cong F, Zeng F et al (2018) Development of a real time reverse transcription loop-mediated isothermal amplification method (RT-LAMP) for detection of a novel swine acute diarrhea syndrome coronavirus (SADS-CoV). J Virol Methods 260:45–48
Yu X, Shi L, Lv X et al (2015) Development of a real-time reverse transcription loop-mediated isothermal amplification method for the rapid detection of porcine epidemic diarrhea virus. Virol J 12:76
Zhang J, Zhao Z, Xu M et al (2015) The establishment of biosensor technology based on F0F1-ATPase molecular motor for detection of rotavirus and hepatitis A virus. Biosens J 4:121
Zubair A, Burbelo PD, Vincent LG et al (2011) Microfluidic LIPS for serum antibody detection: demonstration of a rapid test for HSV-2 infection. Biomed Microdevices 13(6):1053–1062
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2021 The Author(s), under exclusive licence to Springer Nature Switzerland AG
About this entry
Cite this entry
Patra, G., Mukhopadhyay, S. (2021). Emerging Technologies in Diagnostic Virology and Antiviral Strategies. In: Hussain, C.M., Di Sia, P. (eds) Handbook of Smart Materials, Technologies, and Devices. Springer, Cham. https://doi.org/10.1007/978-3-030-58675-1_97-1
Download citation
DOI: https://doi.org/10.1007/978-3-030-58675-1_97-1
Received:
Accepted:
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-58675-1
Online ISBN: 978-3-030-58675-1
eBook Packages: Springer Reference EngineeringReference Module Computer Science and Engineering