Skip to main content

Applications of Difference Gel Electrophoresis (DIGE) in the Study of Microorganisms

  • Protocol
  • First Online:
Microbial Proteomics

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1841))

Abstract

OMICs-based investigations of microorganisms are becoming more and more widespread in the upcoming era of systems and synthetic biology. Here, proteomics plays a key role and two-dimensional difference gel electrophoresis (2D DIGE) remains the “gold-standard” for globally determining protein abundance changes on a quantitative and statistically confident level—in particular also for laboratories not having full-cycle proteomic facilities at their disposal. In this contribution we summarize our methodological procedures and experiences with 2D DIGE accumulated over the past 15 years.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 149.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 199.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Wöhlbrand L, Trautwein K, Rabus R (2013) Proteomic tools for environmental microbiology—a roadmap from sample preparation to protein identification and quantification. Proteomics 13(18–19):2700–2730

    PubMed  Google Scholar 

  2. Rabus R, Trautwein K, Wöhlbrand L (2014) Towards habitat-oriented systems biology of “Aromatoleum aromaticum” EbN1: chemical sensing, catabolic network modulation and growth control in anaerobic aromatic compound degradation. Appl Microbiol Biotechnol 98(8):3371–3388

    Article  CAS  PubMed  Google Scholar 

  3. Rabus R (2014) Fifteen years of physiological proteo(geno)mics with (marine) environmental bacteria. Arch Physiol Biochem 120(5):173–187

    Article  CAS  PubMed  Google Scholar 

  4. Rabilloud T, Chevallet M, Luche S, Lelong C (2010) Two-dimensional gel electrophoresis in proteomics: past, present and future. J Proteome 73(11):2064–2077

    Article  CAS  Google Scholar 

  5. Görg A, Obermaier C, Boguth G, Harder A, Scheibe B, Wildgruber R, Weiss W (2000) The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 21(6):1037–1053

    Article  PubMed  Google Scholar 

  6. Görg A, Weiss W, Dunn MJ (2004) Current two-dimensional electrophoresis technology for proteomics. Proteomics 4(12):3665–3685

    Article  CAS  PubMed  Google Scholar 

  7. Hoving S, Voshol H, van Oostrum J (2000) Towards high performance two-dimensional gel electrophoresis using ultrazoom gels. Electrophoresis 21(13):2617–2621

    Article  CAS  PubMed  Google Scholar 

  8. Ünlü M, Morgan ME, Minden JS (1997) Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis 18(11):2071–2077

    Article  PubMed  Google Scholar 

  9. Gade D, Thiermann J, Markowsky D, Rabus R (2003) Evaluation of two-dimensional difference gel electrophoresis for protein profiling. Soluble proteins of the marine bacterium Pirellula sp. strain 1. J Mol Microbiol Biotechnol 5(4):240–251

    Article  CAS  PubMed  Google Scholar 

  10. Rabus R, Trautwein K (2010) Proteogenomics to study the anaerobic degradation of aromatic compounds and hydrocarbons. In: Timmis KN (ed) Handbook of hydrocarbon and lipid microbiology. Springer, Berlin, pp 4385–4405

    Chapter  Google Scholar 

  11. Neuhoff V, Arold N, Taube D, Ehrhardt W (1988) Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250. Electrophoresis 9(6):255–262

    Article  CAS  PubMed  Google Scholar 

  12. Strijkstra A, Trautwein K, Roesler S, Feenders C, Danzer D, Riemenschneider U, Blasius B, Rabus R (2016) High performance CCD camera system for digitalization of 2D DIGE gels. Proteomics 16(14):1975–1979

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Zech H, Echtermeyer C, Wöhlbrand L, Blasius B, Rabus R (2011) Biological versus technical variability in 2-D DIGE experiments with environmental bacteria. Proteomics 11(16):3380–3389

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgment

Proteomic research (incl. DIGE) in our laboratory was supported by the German Federal Ministry of Education and Research BMBF (REGX-project), the Max Planck Society, and the Deutsche Forschungsgemeinschaft (SPP 1319, SFB TRR 51, GRK 1885).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ralf Rabus .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Trautwein, K., Rabus, R. (2018). Applications of Difference Gel Electrophoresis (DIGE) in the Study of Microorganisms. In: Becher, D. (eds) Microbial Proteomics. Methods in Molecular Biology, vol 1841. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-8695-8_8

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-8695-8_8

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-8693-4

  • Online ISBN: 978-1-4939-8695-8

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics