Abstract
Recent advances in imaging tools have greatly improved our ability to analyze the structure and molecular components of a wide range of biological systems at the nanoscale. High resolution imaging can be performed with a handful of techniques, each of them revealing particular features of the sample. A more comprehensive picture of a biological system can be achieved by combining the information provided by complementary imaging methods. Specifically, the correlation between super-resolution fluorescence imaging and atomic force microscopy (AFM) provides high resolution topography as well as specific chemical information, the latter with a spatial resolution that approaches that of AFM. We present a detailed protocol and discuss the requirements and challenges in terms of sample preparation, instrumentation, and image alignment to combine these two powerful techniques. This hybrid nanoscale imaging tool has the potential to provide robust validation for super-resolution methods as well as new insight into biological samples.
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References
Oreopoulos J, Yip CM (2008) Combined scanning probe and total internal reflection fluorescence microscopy. Methods 46(1):2–10
Caplan J, Niethammer M, Taylor RM 2nd, Czymmek KJ (2011) The power of correlative microscopy: multi-modal, multi-scale, multi-dimensional. Curr Opin Struct Biol 21(5):686–693
Monserrate A, Casado S, Flors C (2014) Correlative atomic force microscopy and localization-based super-resolution microscopy: revealing labelling and image reconstruction artefacts. ChemPhysChem 15(4):647–650
Chacko JV, Zanacchi FC, Diaspro A (2013) Probing cytoskeletal structures by coupling optical superresolution and AFM techniques for a correlative approach. Cytoskeleton 70(11):729–740
Odermatt PD, Shivanandan A, Deschout H, Jankele R, Nievergelt AP, Feletti L, Davidson MW, Radenovic A, Fantner GE (2015) High-resolution correlative microscopy: bridging the gap between single molecule localization microscopy and atomic force microscopy. Nano Lett 15(8):4896–4904
Chacko JV, Canale C, Harke B, Diaspro A (2013) Sub-diffraction nano manipulation using STED AFM. PLoS One 8(6):e66608
Flors C, Ravarani CN, Dryden DT (2009) Super-resolution imaging of DNA labelled with intercalating dyes. ChemPhysChem 10(13):2201–2204
Nečas D, Klapetek P (2012) Gwyddion: an open-source software for SPM data analysis. Open Phys 10(1):181–188
Dedecker P, Duwé S, Neely RK, Zhang J (2012) Localizer: fast, accurate, open-source, and modular software package for superresolution microscopy. J Biomed Opt 17(12):126008–126008
Harke B, Chacko JV, Haschke H, Canale C, Diaspro A (2012) A novel nanoscopic tool by combining AFM with STED microscopy. Opt Nanoscopy 1(3):10.1186
Fronczek D, Quammen C, Wang H, Kisker C, Superfine R, Taylor R, Erie D, Tessmer I (2011) High accuracy FIONA–AFM hybrid imaging. Ultramicroscopy 111(5):350–355
Saraji S, Piri M, Goual L (2014) The effects of SO2 contamination, brine salinity, pressure, and temperature on dynamic contact angles and interfacial tension of supercritical CO2/brine/quartz systems. Int J Greenh Gas Control 28:147–155
Pinotsi D, Schierle GSK, Rees E, Kaminski CF (2013) Localization microscopy for the study of amyloid fibril formation. In: SPIE NanoScience+ engineering. International Society for Optics and Photonics, p 88150G, 20 September 2013
Bondia P, Jurado R, Casado S, Domínguez-Vera JM, Gálvez N, Flors C (2017) Hybrid nanoscopy of hybrid nanomaterials. Small 13(7):1603784
Zhang WI, Röhse H, Rizzoli SO, Opazo F (2014) Fluorescent in situ hybridization of synaptic proteins imaged with super-resolution STED microscopy. Microsc Res Tech 77(7):517–527
Dorobantu LS, Goss GG, Burrell RE (2012) Atomic force microscopy: a nanoscopic view of microbial cell surfaces. Micron 43(12):1312–1322
Hansma P, Cleveland J, Radmacher M, Walters D, Hillner P, Bezanilla M, Fritz M, Vie D, Hansma H, Prater C (1994) Tapping mode atomic force microscopy in liquids. Appl Phys Lett 64(13):1738–1740
De Pablo P, Colchero J, Gomez-Herrero J, Baro A (1998) Jumping mode scanning force microscopy. Appl Phys Lett 73(22):3300–3302
Moreno-Herrero F, Colchero J, Gomez-Herrero J, Baro A (2004) Atomic force microscopy contact, tapping, and jumping modes for imaging biological samples in liquids. Phys Rev E Stat Nonlinear Soft Matter Phys 69(3):031915
Duim WC, Chen B, Frydman J, Moerner W (2011) Sub-diffraction imaging of Huntingtin protein aggregates by fluorescence blink-microscopy and atomic force microscopy. ChemPhysChem 12(13):2387–2390
Sanchez H, Kertokalio A, van Rossum-Fikkert S, Kanaar R, Wyman C (2013) Combined optical and topographic imaging reveals different arrangements of human RAD54 with presynaptic and postsynaptic RAD51–DNA filaments. Proc Natl Acad Sci U S A 110(28):11385–11390
Sanchez H, Kanaar R, Wyman C (2010) Molecular recognition of DNA–protein complexes: a straightforward method combining scanning force and fluorescence microscopy. Ultramicroscopy 110(7):844–851
Lee JK, Jäckel F, Moerner W, Bao Z (2009) Micrometer-sized DNA–single-fluorophore–DNA supramolecule: synthesis and single-molecule characterization. Small 5(21):2418–2423
Acknowledgments
This work has been financed by the Spanish Ministerio de Economía y Competitividad (RyC2011-07637, MAT2012-34487, MAT2015-66605-P) and the European Commission Marie Curie Actions (FP7-PEOPLE-2011-CIG n° 303620). S.C. thanks the European Union structural funds and the Comunidad de Madrid MAD2D-CM Program (S2013/MIT-3007). We thank Dr. Peter Dedecker (Katholieke Universiteit Leuven, Belgium) for the Localizer software.
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Bondia, P., Casado, S., Flors, C. (2017). Correlative Super-Resolution Fluorescence Imaging and Atomic Force Microscopy for the Characterization of Biological Samples. In: Erfle, H. (eds) Super-Resolution Microscopy. Methods in Molecular Biology, vol 1663. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7265-4_9
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DOI: https://doi.org/10.1007/978-1-4939-7265-4_9
Publisher Name: Humana Press, New York, NY
Print ISBN: 978-1-4939-7264-7
Online ISBN: 978-1-4939-7265-4
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