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Application of In Vitro Transposon Mutagenesis to Erythromycin Strain Improvement in Saccharopolyspora erythraea

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In Vitro Mutagenesis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1498))

Abstract

Transposon mutagenesis is an invaluable technique in molecular biology for the creation of random mutations that can be easily identified and mapped. However, in the field of microbial strain improvement, transposon mutagenesis has scarcely been used; instead, chemical and physical mutagenic methods have been traditionally favored. Transposons have the advantage of creating single mutations in the genome, making phenotype to genotype assignments less challenging than with traditional mutagens which commonly create multiple mutations in the genome. The site of a transposon mutation can also be readily mapped using DNA sequencing primer sites engineered into the transposon termini. In this chapter an in vitro method for transposon mutagenesis of Saccharopolyspora erythraea is presented. Since in vivo transposon tools are not available for most actinomycetes including S. erythraea, an in vitro method was developed. The in vitro method involves a significant investment in time and effort to create the mutants, but once the mutants are made and screened, a large number of highly relevant mutations of direct interest to erythromycin production can be found.

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References

  1. Peano C, Talà A, Corti G, Pasanisi D, Durante M, Mita G, Bicciato S, De Bellis G, Alifano P (2012) Comparative genomics and transcriptional profiles of Saccharopolyspora erythraea NRRL2338 and a classically improved erythromycin over-producing strain. Microb Cell Fact 11:32

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Li YY, Chang X, Yu WB, Li H, Ye ZQ, Yu H, Liu BH, Zhang Y, Zhang SL, Ye BC, Li YX (2013) Systems perspectives on erythromycin biosynthesis by comparative genomic and transcriptomic analyses of S. erythraea E3 and NRRL23338 strains. BMC Genomics 14:523

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Reeves AR, Weber JM (2012) Metabolic engineering of antibiotic-producing actinomycetes using in vitro transposon mutagenesis. Methods Mol Biol (Clifton, NJ) 834:153–175

    Article  CAS  Google Scholar 

  4. Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ, Kieser HM, Lydiate DJ, Smith CP, Ward JM, Schrempf H (1985) Genetic manipulation of Streptomyces. A laboratory manual. The John Innes Foundation, Norwich, England

    Google Scholar 

  5. Kieser T, Bibb MJ, Buttner MJ, Chater KF, Hopwood DA (2000) Practical Streptomyces genetics. The John Innes Foundation, Norwich, England

    Google Scholar 

  6. Vinci VA, Byng G (1999) Strain improvement by nonrecombinant methods. In: Demain AL, Davies JE (eds) Manual of industrial microbiology and biotechnology, 2nd edn. ASM Press, Washington, DC, pp 103–113

    Google Scholar 

  7. Griffiths AJF, Miller JH, Suzuki DT, Lewontin RC, Gelbart WM (2000) An introduction to genetic analysis. Review of transposable elements in prokaryotes, 7th edn. W. H. Freeman, New York, http://www.ncbi.nlm.nih.gov/books/NBK21805/

  8. Goryshin IY, Reznikoff WS (1998) Tn5 in vitro transposon mutagenesis. J Biol Chem 273:7367–7374

    Article  CAS  PubMed  Google Scholar 

  9. Fedashchin A, Cernota WH, Gonzalez MC, Leach BI, Kwan N, Wesley RK, Weber JM (2015) Random transposon mutagenesis of the Saccharopolyspora erythraea genome reveals additional genes influencing erythromycin biosynthesis. FEMS Microbiol Lett 362:22

    Article  Google Scholar 

  10. Oliynyk M, Samborskyy M, Lester JB, Mironenko T, Scott N, Dickens S, Haydock SF, Leadlay PF (2007) Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338. Nat Biotechnol 25:447–453

    Article  CAS  PubMed  Google Scholar 

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Correspondence to J. Mark Weber .

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Weber, J.M., Reeves, A., Cernota, W.H., Wesley, R.K. (2017). Application of In Vitro Transposon Mutagenesis to Erythromycin Strain Improvement in Saccharopolyspora erythraea . In: Reeves, A. (eds) In Vitro Mutagenesis. Methods in Molecular Biology, vol 1498. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6472-7_17

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  • DOI: https://doi.org/10.1007/978-1-4939-6472-7_17

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6470-3

  • Online ISBN: 978-1-4939-6472-7

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