Skip to main content

Method to Measure Ubiquitination of NLRs

  • Protocol
  • First Online:
NLR Proteins

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2696))

  • 763 Accesses

Abstract

Posttranslational modifications are crucial in determining the functions of proteins in the cell. Modification of the NLRP3 inflammasome by the ubiquitin system has recently emerged as a new level of regulation of the inflammasome complex. Here we describe a method to detect poly-ubiquitination of NRLP3 using two different approaches: (i) detection with a ubiquitin antibody or (ii) using TUBEs (Tandem Ubiquitin Binding entities). This approach can be used to detect ubiquitination of other NLRs or other proteins.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 149.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Hershko A, Ciechanover A (1998) The ubiquitin system. Annu Rev Biochem 67:425–479

    Article  CAS  PubMed  Google Scholar 

  2. Clague MJ, Barsukov I, Coulson JM, Liu H, Rigden DJ, Urbe S (2013) Deubiquitylases from genes to organism. Physiol Rev 93:1289–1315

    Article  CAS  PubMed  Google Scholar 

  3. Aguilar RC, Wendland B (2003) Ubiquitin: not just for proteasomes anymore. Curr Opin Cell Biol 15:184–190

    Article  CAS  PubMed  Google Scholar 

  4. Malynn BA, Ma A (2010) Ubiquitin makes its mark on immune regulation. Immunity 33:843–852

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Harhaj EW, Dixit VM (2012) Regulation of NF-kappaB by deubiquitinases. Immunol Rev 246:107–124

    Article  PubMed  PubMed Central  Google Scholar 

  6. Skaug B, Jiang X, Chen ZJ (2009) The role of ubiquitin in NF-kappaB regulatory pathways. Annu Rev Biochem 78:769–796

    Article  CAS  PubMed  Google Scholar 

  7. Lopez-Castejon G (2020) Control of the inflammasome by the ubiquitin system. FEBS J 287:11–26

    Article  CAS  PubMed  Google Scholar 

  8. Swanson KV, Deng M, Ting JP (2019) The NLRP3 inflammasome: molecular activation and regulation to therapeutics. Nat Rev Immunol 19:477–489

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Latz E, Xiao TS, Stutz A (2013) Activation and regulation of the inflammasomes. Nat Rev Immunol 13:397–411

    Article  CAS  PubMed  Google Scholar 

  10. Hwang J, Kalejta RF (2011) In vivo analysis of protein sumoylation induced by a viral protein: Detection of HCMV pp71-induced Daxx sumoylation. Methods 55:160–165

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Palazon-Riquelme, P., Worboys, J., Green J, Valera A, Martín-Sánchez F, Pellegrin C Brough D and López-Castejón G. 2018. USP7 and USP47 deubiquitinases regulate NLRP3 inflammasome activation. EMBO Reports, 19:e44766

    Article  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgments

This work was supported by funds from the Manchester Collaborative Centre for Inflammation Research and the Sir Henry Dale fellowship from the Wellcome Trust (UK; Grant 104192/Z/14/Z).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Gloria López-Castejón .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2023 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Worboys, J.D., Palazón-Riquelme, P., López-Castejón, G. (2023). Method to Measure Ubiquitination of NLRs. In: Pelegrín, P., Di Virgilio, F. (eds) NLR Proteins. Methods in Molecular Biology, vol 2696. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3350-2_7

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-3350-2_7

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-3349-6

  • Online ISBN: 978-1-0716-3350-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics