Abstract
In this chapter, we describe methods for reconstituting and analyzing the transport of isolated endogenous cargoes in vitro. Intracellular cargoes are transported along microtubules by teams of kinesin and dynein motors and their cargo-specific adaptor proteins. Observations from living cells show that organelles and vesicular cargoes exhibit diverse motility characteristics. Yet, our knowledge of the molecular mechanisms by which intracellular transport is regulated is not well understood. Here, we describe step-by-step protocols for the extraction of phagosomes from cells at different stages of maturation, and reconstitution of their motility along microtubules in vitro. Quantitative immunofluorescence and photobleaching techniques are also described to measure the number of motors and adaptor proteins on these isolated cargoes. In addition, we describe techniques for tracking the motility of isolated cargoes along microtubules using TIRF microscopy and quantitative force measurements using an optical trap. These methods enable us to study how the sets of motors and adaptors that drive the transport of endogenous cargoes regulate their trafficking in cells.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Gross SP, Welte MA, Block SM, Wieschaus EF (2002) Coordination of opposite-polarity microtubule motors. J Cell Biol 156(4):715–724
Welte MA (2004) Bidirectional transport along microtubules. Curr Biol 14(13):525–537
Blehm BH, Schroer TA, Trybus KM, Chemla YR, Selvin PR (2013) In vivo optical trapping indicates kinesin’s stall force is reduced by dynein during intracellular transport. Proc Natl Acad Sci U S A 110(9):3381–3386
Jenkins B, Decker H, Bentley M, Luisi J, Banker G (2012) A novel split kinesin assay identifies motor proteins that interact with distinct vesicle populations. J Cell Biol 198(4):749–761
Chaudhary AR, Berger F, Berger CL, Hendricks AG (2018) Tau directs intracellular trafficking by regulating the forces exerted by kinesin and dynein teams. Traffic 19(2):111–121
Vershinin M, Carter BC, Razafsky DS, King SJ, Gross SP (2007) Multiple-motor based transport and regulation by tau. Proc Natl Acad U S A 104(1):87–92
Ally S, Larson AG, Barlan K, Rice SE, Gelfand VI (2009) Opposite-polarity motors activate one another to trigger cargo transport in live cells. J Cell Biol 187(7):1071–1082
Soppina V, Rai AK, Ramaiya AV, Barak P, Mallik R (2009) Tug-of-war between dissimilar teams of microtubule motors regulates transport and fission of endosomes. Proc Natl Acad U S A 106(46):19381–19386
Hendricks AG, Holzbaur EL, Goldman YE (2012) Force measurements on cargoes in living cells reveal collective dynamics of microtubule motors. Proc Natl Acad U S A 109(45):18447–18452
Ferro LS, Can S, Turner MA, El-Shenawy MM, Yildiz A (2019) Kinesin and dynein use distinct mechanisms to bypass obstacles. elife 8:e48629
Henrichs V, Grycova L, Barinka C, Nahacka Z, Neuzil J, Diez S, Rohlena J, Braun M, Lansky Z (2020) Mitochondria-adaptor TRAK1 promotes kinesin-1 driven transport in crowded environments. Nat Commun 11(1):3123
Dixit R, Ross JL, Goldman YE, Holzbaur EL (2008) Differential regulation of dynein and kinesin motor proteins by tau. Science 319(5866):1086–1090
Hoeprich GJ, Thompson AR, McVicker DP, Hancock WO, Berger CL (2014) Kinesin’s neck-linker determines its ability to navigate obstacles on the microtubule surface. Biophys J 106(8):1691–1700
Monroy BY, Sawyer DL, Ackermann BE, Borden MM, Tan TC, Ori-McKenney K (2018) Competition between microtubule-associated proteins directs motor transport. Nat Commun 9(1):1487
Hooikaas PJ, Martin M, Mühlethaler T et al (2019) MAP7 family proteins regulate kinesin-1 recruitment and activation. J Cell Biol 218(4):1298–1318
Colin EC, Zala D, Liot G, Rangone H, Borrell-Pagès M, Li XJ, Saudou F, Humbert S (2008) Huntingtin phosphorylation acts as a molecular switch for anterograde/retrograde transport in neurons. EMBO J 27(15):2124–2134
Satake T, Otsuki K, Banba Y, Suenaga J, Hirano H, Yamanaka Y, Ohno S, Hirai S (2013) The interaction of Kinesin-1 with its adaptor JIP1 can be regulated via proteins binding to the JIP1-PTB domain. BMC Cell Biol 14:12
Fu MM, Holzbaur EL (2013) JIP1 regulates the directionality of APP axonal transport by coordinating kinesin and dynein motors. J Cell Biol 202(3):495–508
Zhang J, Qiu R, Arst HN Jr, Peñalva MA, Xiang X (2014) HookA is a novel dynein-early endosome linker critical for cargo movement in vivo. J Cell Biol 204(6):1009–1026
Olenick MA, Tokito M, Boczkowska M, Dominguez R, Holzbaur EL (2016) Hook adaptors induce unidirectional processive motility by enhancing the dynein-dynactin interaction. J Biol Chem 291(35):18239–18251
Olenick MA, Dominguez R, Holzbaur EL (2019) Dynein activator Hook1 is required for trafficking of BDNF-signaling endosomes in neurons. J Cell Biol 218(1):220–233
Kesisova IA, Robinson BP, Spiliotos ET (2021) A septin GTPase scaffold of dynein-dynactin motors triggers retrograde lysosome transport. J Cell Biol 220(2):e202005219
Migazzi A, Scaramuzzino C, Anderson EN et al (2021) Huntingtin-mediated axonal transport requires arginine methylation by PRMT6. Cell Rep 35(2):108980
Chaudhary AR, Lu H, Krementsova EB, Bookwalter CS, Trybus KM, Hendricks AG (2019) MAP7 regulates organelle transport by recruiting kinesin-1 to microtubules. J Biol Chem 294(26):10160–10171
Hirokawa N, Noda Y, Tanaka Y, Niwa S (2009) Kinesin superfamily motor proteins and intracellular transport. Nat Rev Mol Cell Biol 10(10):682–696
Akhmanova A, Hammer JA 3rd (2010) Linking molecular motors to membrane cargo. Curr Opin Cell Biol 22(4):479–487
Fu MM, Holzbaur EL (2014) Integrated regulation of motor-driven organelle transport by scaffolding proteins. Trends Cell Biol 24(10):564–574
Cason SE, Carman PJ, Van Duyne C, Goldsmith J, Dominguez R, Holzbaur EL (2021) Sequential dynein effectors regulate axonal autophagosome motility in a maturation-dependent pathway. J Cell Biol 220(7):e202010179
Loubéry S, Wilhelm C, Hurbain I, Neveu S, Louvard D, Coudrier E (2008) Different microtubule motors move early and late endocytic compartments. Traffic 9(4):492–509
Goyette G, Boulais J, Carruthers NJ, Landry CR, Jutras I, Duclos S, Dermine JF, Michnick SW, LaBoissière S, Lajoie G, Barreiro L, Thibault P, Desjardins M (2012) Proteomic characterization of phagosomal membrane microdomains during phagolysosome biogenesis and evolution. Mol Cell Proteomics 11(11):1365–1377
Hyman A, Drechsel D, Kellogg D, Salser S, Sawin K, Steffen P, Wordeman L, Mitchison T (1991) Preparation of modified tubulins. Methods Enzymol 196:478–485
Rogers KR, Weiss S, Crevel I, Brophy PJ, Geeves M, Cross R (2001) KIF1D is a fast non-processive kinesin that demonstrates novel K-loop-dependent mechanochemistry. EMBO J 20(18):5101–5113
Garin J, Diez R, Kieffer S, Dermine JF, Duclos S, Gagnon E, Sadoul R, Rondeau C, Desjardins M (2001) The phagosome proteome: insight into phagosome function. J Cell Biol 152(1):165–180
Desjardins M, Celis JE, van Meer G, Dieplinger H, Jahraus A, Griffiths G, Huber LA (1994) Molecular characterization of phagosomes. J Biol Chem 269(51):32194–32200
Dixit R, Ross JL (2010) Studying plus-end tracking at single-molecule resolution using TIRF microscopy. Methods Cell Biol 95:543–554
Chen Y, Deffenbaugh NC, Anderson CT, Hancock WO (2014) Molecular counting by photobleaching in protein complexes with many subunits: best practices and application to the cellulose synthesis complex. Mol Biol Cell 25(22):3630–3642
Ruhnow F, Zwicker D, Diez S (2011) Tracking single particles and elongated filaments with nanometer precision. Biophys J 100(11):2820–2828
Hendricks AG, Perlson E, Ross JL, Schroeder HW 3rd, Tokito M, Holzbaur EL (2010) Motor coordination via a tug-of-war mechanism drives bidirectional vesicle transport. Curr Biol 20(8):697–702
Nicholas MP, Rao L, Gennerich A (2014) An improved optical tweezers assay for measuring the force generation of single kinesin molecules. Methods Mol Biol 1136:171–246
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2023 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Beaudet, D., Hendricks, A.G. (2023). Reconstitution of Organelle Transport Along Microtubules In Vitro. In: Markus, S.M. (eds) Dynein. Methods in Molecular Biology, vol 2623. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2958-1_8
Download citation
DOI: https://doi.org/10.1007/978-1-0716-2958-1_8
Published:
Publisher Name: Humana, New York, NY
Print ISBN: 978-1-0716-2957-4
Online ISBN: 978-1-0716-2958-1
eBook Packages: Springer Protocols