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Flow Cytometry Approaches to Obtain Medulloblastoma Stem Cells from Bulk Cultures

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Medulloblastoma

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2423))

Abstract

Cancer stem cells are considered the reservoir cancer cells that are resistant to most of the forms of cancer therapies and cause relapse of the tumor. Medulloblastoma (MB), a primary CNS tumor, is a very fast-growing tumor affecting younger population. In order to characterize medulloblastoma cancer stem cells or studying the drug resistance in MB mediated through the cancer stem cells, it becomes essential to isolate and study them. Isolation and characterization of tumor cells is a critical step in understanding the cancer progression and to devise novel approaches against them as drug targets. Typically, characterization of stem cells is done through surface marker analysis and with the advent of flow cytometry based techniques, this has become incredibly straightforward. Flow cytometry employs a uniformly linear flow of cells created by complex hydraulics of the flow cytometer followed by illuminating flow path with a LASER beam. This gives very valuable information about cell composition in forward scatter (FSC) and side scatter (SSC). The surface molecules of the cells can further be stained with various florescent dyes which upon excitation with the LASER beam will give the signal that will be detected by the instrument. Flow cytometer is high-throughput equipment and requires careful operation to get valuable information about the samples. In this chapter, we describe how from a bulk cell sample of medulloblastoma cells, cancer stem cells are isolated.

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References

  1. Shapiro HM (2018) Flow cytometry: the glass is half full. In: Methods in molecular biology, vol 1678. Humana Press, pp 1–10. https://doi.org/10.1007/978-1-4939-7346-0_1

    Chapter  Google Scholar 

  2. Northcott PA, Buchhalter I, Morrissy AS, Hovestadt V, Weischenfeldt J, Ehrenberger T, Gröbner S, Segura-Wang M, Zichner T, Rudneva VA, Warnatz HJ, Sidiropoulos N, Phillips AH, Schumacher S, Kleinheinz K, Waszak SM, Erkek S, Jones DTW, Worst BC et al (2017) The whole-genome landscape of medulloblastoma subtypes. Nature 547(7663):311–317. https://doi.org/10.1038/nature22973

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  3. Manoranjan B, Venugopal C, Bakhshinyan D, Adile AA, Richards L, Kameda-Smith MM, Whitley O, Dvorkin-Gheva A, Subapanditha M, Savage N, Tatari N, McKenna D, Bassey-Archibong B, Winegarden N, Hallett R, Provias JP, Yarascavitch B, Ajani O, Fleming A et al (2020) Wnt activation as a therapeutic strategy in medulloblastoma. Nat Commun 11(1):1–12. https://doi.org/10.1038/s41467-020-17953-4

    Article  CAS  Google Scholar 

  4. Read TA, Fogarty MP, Markant SL, McLendon RE, Wei Z, Ellison DW, Febbo PG, Wechsler-Reya RJ (2009) Identification of CD15 as a marker for tumor-propagating cells in a mouse model of medulloblastoma. Cancer Cell 15(2):135–147. https://doi.org/10.1016/j.ccr.2008.12.016

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  5. Singh SK, Clarke ID, Terasaki M, Bonn VE, Hawkins C, Squire J, Dirks PB (2003) Identification of a cancer stem cell in human brain tumors. Cancer Res 63(18):5821–5828. http://www.ncbi.nlm.nih.gov/pubmed/14522905

    CAS  PubMed  Google Scholar 

  6. Singh SK, Hawkins C, Clarke ID, Squire JA, Bayani J, Hide T, Henkelman RM, Cusimano MD, Dirks PB (2004) Identification of human brain tumour initiating cells. Nature 432(7015):396–401. https://doi.org/10.1038/nature03128

    Article  CAS  PubMed  Google Scholar 

  7. Subapanditha MK, Adile AA, Venugopal C, Singh SK (2019) Flow cytometric analysis of brain tumor stem cells. In: Methods in molecular biology, vol 1869. Humana Press, pp 69–77. https://doi.org/10.1007/978-1-4939-8805-1_6

    Chapter  Google Scholar 

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Acknowledgements

The protocol described here and the data presented here are from Dr. Sheila Singh laboratory, McMaster University in Canada. The authors are thankful to her for providing the resources and giving the consent to publish.

Conflict of Interest

The authors declare no conflicts of interest.

Funding Statement

N.G. acknowledges the Science and Engineering Research Board grant, India (SB/S2/RJN-072/2015), (ECR/2017/00092) and the seed grant under Institute of Eminence Scheme (IOE), BHU for financial support. P.K. acknowledges Malviya postdoctoral fellowship under IOE Scheme, BHU.

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Correspondence to Neha Garg .

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© 2022 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

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Kumar, P., Garg, N. (2022). Flow Cytometry Approaches to Obtain Medulloblastoma Stem Cells from Bulk Cultures. In: Dey, A., Malhotra, A., Garg, N. (eds) Medulloblastoma. Methods in Molecular Biology, vol 2423. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1952-0_8

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  • DOI: https://doi.org/10.1007/978-1-0716-1952-0_8

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-1951-3

  • Online ISBN: 978-1-0716-1952-0

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