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Subcellular Fractionation to Demonstrate Activation of Intrinsic Apoptotic Pathway

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Detection of Cell Death Mechanisms

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2255))

Abstract

Within the cell, proteins are segregated into different organelles depending on their function and activation status. In response to stimulus, posttranslational modifications or loss of organelle membrane integrity lead to the movement of proteins from one compartment to another. This movement of proteins or protein translocation, exerts a significant effect on protein function. This is clearly demonstrated in the context of apoptosis wherein the cytoplasmic translocation of the mitochondrial resident protein, cytochrome C, initiates the activation of the intrinsic arm of the apoptotic pathway. Experimentally, protein translocation can be demonstrated by subcellular fractionation and subsequent western blot analysis of the isolated fractions. This chapter describes the step-by-step procedure in obtaining mitochondrial and cytoplasmic fractions from cell pellets and determining their purity and integrity.

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References

  1. Bradshaw RA, Medzihradszky KF, Chalkley RJ (2010) Protein PTMs: post-translational modifications or pesky trouble makers? J Mass Spectrom 45(10):1095–1097. https://doi.org/10.1002/jms.1786

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Sirover MA (2012) Subcellular dynamics of multifunctional protein regulation: mechanisms of GAPDH intracellular translocation. J Cell Biochem 113(7):2193–2200. https://doi.org/10.1002/jcb.24113

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Elmore S (2007) Apoptosis: a review of programmed cell death. Toxicol Pathol 35(4):495–516. https://doi.org/10.1080/01926230701320337

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Salvesen GS (2002) Caspases and apoptosis. Essays Biochem 38:9–19. https://doi.org/10.1042/bse0380009

    Article  CAS  PubMed  Google Scholar 

  5. Garrido C, Galluzzi L, Brunet M, Puig PE, Didelot C, Kroemer G (2006) Mechanisms of cytochrome c release from mitochondria. Cell Death Differ 13(9):1423–1433. https://doi.org/10.1038/sj.cdd.4401950

    Article  CAS  PubMed  Google Scholar 

  6. Russell JC, Whiting H, Szuflita N, Hossain MA (2008) Nuclear translocation of X-linked inhibitor of apoptosis (XIAP) determines cell fate after hypoxia ischemia in neonatal brain. J Neurochem 106(3):1357–1370. https://doi.org/10.1111/j.1471-4159.2008.05482.x

    Article  CAS  PubMed  Google Scholar 

  7. Baghirova S, Hughes BG, Hendzel MJ, Schulz R (2015) Sequential fractionation and isolation of subcellular proteins from tissue or cultured cells. MethodsX 2:440–445. https://doi.org/10.1016/j.mex.2015.11.001

    Article  PubMed  PubMed Central  Google Scholar 

  8. Holden P, Horton WA (2009) Crude subcellular fractionation of cultured mammalian cell lines. BMC Res Notes 2:243. https://doi.org/10.1186/1756-0500-2-243

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Correspondence to Ayesha B. Alvero .

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Chehade, H., Fox, A., Mor, G.G., Alvero, A.B. (2021). Subcellular Fractionation to Demonstrate Activation of Intrinsic Apoptotic Pathway. In: Alvero, A.B., Mor, G.G. (eds) Detection of Cell Death Mechanisms. Methods in Molecular Biology, vol 2255. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1162-3_3

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  • DOI: https://doi.org/10.1007/978-1-0716-1162-3_3

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-1161-6

  • Online ISBN: 978-1-0716-1162-3

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