Skip to main content

Decarboxylative Couplings for Late-Stage Peptide Modifications

  • Protocol
  • First Online:
Peptide Synthesis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2103))

Abstract

The application of designer peptides in medicinal chemistry, chemical biology, and materials science has generated new interest in synthetic methods for the structural modification of amino acids. Strategies which facilitate the direct diversification of proteinogenic functional groups within unprotected peptide substrates are particularly attractive as they leverage modern solution- and solid-phase protocols—tools which are now both robust and routine—for the synthesis of native peptides. Accordingly, a recent approach to the decarboxylative functionalization of peptidic carboxylic acids, including aspartic/glutamic acid residues and α-carboxylic acids, has proven to be a promising new strategy for peptide modification. This synthetic method merges conventional strategies for the activation of carboxylic acids with transition metal-catalyzed cross-coupling chemistry to forge new C–C bonds for the late-stage introduction of valuable synthetic handles. This chapter details a step-by-step protocol for the activation and nickel-catalyzed decarboxylative alkylation of a simple peptide substrate to highlight the broad utility of this strategy for the synthesis of designer peptides.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 109.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 149.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Palomo JM (2014) Solid-phase peptide synthesis: an overview focused on the preparation of biologically relevant peptides. RSC Adv 4(62):32658–32672. https://doi.org/10.1039/C4RA02458C

    Article  CAS  Google Scholar 

  2. Conibear AC, Watson EE, Payne RJ, Becker CFW (2018) Native chemical ligation in protein synthesis and semi-synthesis. Chem Soc Rev 47(24):9046–9068. https://doi.org/10.1039/C8CS00573G

    Article  CAS  PubMed  Google Scholar 

  3. Kulkarni SS, Sayers J, Premdjee B, Payne RJ (2018) Rapid and efficient protein synthesis through expansion of the native chemical ligation concept. Nat Rev Chem 2:0122. https://doi.org/10.1038/s41570-018-0122

    Article  CAS  Google Scholar 

  4. deGruyter JN, Malins LR, Baran PS (2017) Residue-specific peptide modification: a chemist’s guide. Biochemistry 56(30):3863–3873. https://doi.org/10.1021/acs.biochem.7b00536

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Koniev O, Wagner A (2015) Developments and recent advancements in the field of endogenous amino acid selective bond forming reactions for bioconjugation. Chem Soc Rev 44(15):5495–5551. https://doi.org/10.1039/C5CS00048C

    Article  CAS  PubMed  Google Scholar 

  6. Walsh CT, Garneau-Tsodikova S, Gatto GJ Jr (2005) Protein posttranslational modifications: the chemistry of proteome diversifications. Angew Chem Int Ed Engl 44(45):7342–7372. https://doi.org/10.1002/anie.200501023

    Article  CAS  PubMed  Google Scholar 

  7. Spicer CD, Davis BG (2014) Selective chemical protein modification. Nat Commun 5:4740. https://doi.org/10.1038/ncomms5740

    Article  CAS  PubMed  Google Scholar 

  8. Hoyt EA, Cal PMSD, Oliveira BL, Bernardes GJL (2019) Contemporary approaches to site-selective protein modification. Nat Rev Chem 3:147–171. https://doi.org/10.1038/s41570-019-0079-1

    Article  CAS  Google Scholar 

  9. Malins LR (2018) Decarboxylative couplings as versatile tools for late-stage peptide modifications. Pept Sci 110(3):e24049. https://doi.org/10.1002/pep2.24049

    Article  CAS  Google Scholar 

  10. deGruyter JN, Malins LR, Wimmer L, Clay KJ, Lopez-Ogalla J, Qin T, Cornella J, Liu Z, Che G, Bao D, Stevens JM, Qiao JX, Allen MP, Poss MA, Baran PS (2017) CITU: a peptide and decarboxylative coupling reagent. Org Lett 19(22):6196–6199. https://doi.org/10.1021/acs.orglett.7b03121

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Cornella J, Edwards JT, Qin T, Kawamura S, Wang J, Pan CM, Gianatassio R, Schmidt M, Eastgate MD, Baran PS (2016) Practical Ni-catalyzed aryl-alkyl cross-coupling of secondary redox-active esters. J Am Chem Soc 138(7):2174–2177. https://doi.org/10.1021/jacs.6b00250

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Qin T, Cornella J, Li C, Malins LR, Edwards JT, Kawamura S, Maxwell BD, Eastgate MD, Baran PS (2016) A general alkyl-alkyl cross-coupling enabled by redox-active esters and alkylzinc reagents. Science 352(6287):801–805. https://doi.org/10.1126/science.aaf6123

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Edwards JT, Merchant RR, McClymont KS, Knouse KW, Qin T, Malins LR, Vokits B, Shaw SA, Bao DH, Wei FL, Zhou T, Eastgate MD, Baran PS (2017) Decarboxylative alkenylation. Nature 545(7653):213–218. https://doi.org/10.1038/nature22307

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Smith JM, Qin T, Merchant RR, Edwards JT, Malins LR, Liu Z, Che G, Shen Z, Shaw SA, Eastgate MD, Baran PS (2017) Decarboxylative alkynylation. Angew Chem Int Ed Engl 56(39):11906–11910. https://doi.org/10.1002/anie.201705107

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Li C, Wang J, Barton LM, Yu S, Tian M, Peters DS, Kumar M, Yu AW, Johnson KA, Chatterjee AK, Yan M, Baran PS (2017) Decarboxylative borylation. Science 356(6342):eaam7355. https://doi.org/10.1126/science.aam7355

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Lara R. Malins .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2020 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Zhang, M.Y., Malins, L.R. (2020). Decarboxylative Couplings for Late-Stage Peptide Modifications. In: Hussein, W., Skwarczynski, M., Toth, I. (eds) Peptide Synthesis. Methods in Molecular Biology, vol 2103. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0227-0_19

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-0227-0_19

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0226-3

  • Online ISBN: 978-1-0716-0227-0

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics